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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G45330 | AT | Annotation by Michelle Graham. TAIR10: RNA 2'-phosphotransferase, Tpt1 / KptA family | chr2:18686340-18687874 FORWARD LENGTH=286 | SoyBase | E_val: 2.00E-80 | ISS |
| GO:0006388 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tRNA splicing, via endonucleolytic cleavage and ligation | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0000215 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: tRNA 2'-phosphotransferase activity | SoyBase | N/A | ISS |
| GO:0016772 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups | SoyBase | N/A | ISS |
| KOG2278 | KOG | RNA:NAD 2'-phosphotransferase TPT1 | JGI | ISS | |
| PTHR12684 | Panther | PUTATIVE PHOSPHOTRANSFERASE | JGI | ISS | |
| PF01885 | PFAM | RNA 2'-phosphotransferase, Tpt1 / KptA family | JGI | ISS | |
| UniRef100_G7JDD5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: tRNA 2'-phosphotransferase n=1 Tax=Medicago truncatula RepID=G7JDD5_MEDTR | SoyBase | E_val: 5.00E-102 | ISS |
| UniRef100_I1MXZ8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MXZ8_SOYBN | SoyBase | E_val: 9.00E-131 | ISS |
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Glyma17g37310 not represented in the dataset |
Glyma17g37310 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g254400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g37310.3 sequence type=transcript gene model=Glyma17g37310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ACTTATTTTTTGAGGGTAAGAGGGTAAAGACTCTTTCTCCACCGTTGCAAAAACCTCATACTTGTACACCGCTTCTTCCACATTCTACTCTTCTCAAAATTCCAATCCAATCCATGTTTGCTTCAGTGACCAACAGCAGCACCAATATTTTACGCCACTGCGCTCTCCTGCGTCCACGTGTCACTCCCATATTCCTCTCTCTGCTTCACAGGCTCGGTGCCTCAGCTCCAATGGACAACAATGCCCGCAGCAACCCCTTCTCCTCGTACGCTCACGCCTCTCCGAGCACTGGCAGAGGAAAGGCTTTTGATATGAGAAATGATAGAGAGAGAACAAGAGGGCGTGGAGGTGGGAGTGGCTCAGGAAAGGACAAAATTGATTCTCTTGGTAGACTCCTGACACGAATTTTACGGCATATGGCATCTGAATTGAATTTGAATATGCGGAGTGATGGTTATGTAAAAGTTAATGATTTGCTAAAGCTGAATCTGAAGACATTTGCTAATATTCCACTGAAATTGCACACTATTGATGATATTAGGGAGGCTGTTCGAAAAGATAATAAGCAGCGGTTTAGCCTCTTAGAAGAGAATGGGGAACTACTAATACGTGCAAACCAAGGCCACACAGTAAAGGCCGTTGAAACTGAAAGCTTGTTGAAACCAATCCTTTCAGCCGAAGAATTTCCAGTTTGTGTGCATGGAACCTACAGAAAGAACCTGGAATCAATTCTAGGATCTGGTCTGAAGCGCATGAAGAGATTGCATGTTCATTTTTCTTGTGGTTTACCAACAGATGGAGAAGTAATTAGTGGTATGAGGCAGGATGTCAATGTTCTGATCTTTCTAGACGTTAGAAAAGCATTAGAAGAAGGTATGAAGCTTTACATTTCTGACAACAAGGTGATCTTGACGGAAGGTTTTGATGGTGTTGTTCCTGCCAAGTATTTTGAAAAGATAGAATCATGGCCCAGCAGACAGCCCATTCCTTTTTAAAGTTCTCTTACAATTTTGCTTTTACTTAGGATCACAGTACGTTGAGGTTTACTAGATGATTGTGTAAACCTCTCACAAGAATTACTACTTGATTCCTAGTTTTTGTTTTTTTTAATGATTAAGTTTACTTTGGGTCATTGAATTATATATACTATGTTTTTCTTTTTGCCAGATTGAGTTATATATATGTAAAGATTTTCTTTTGACGGAATGAATATATATATATATATATATATATATGTGTGTGTGTG >Glyma17g37310.4 sequence type=transcript gene model=Glyma17g37310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ACTTATTTTTTGAGGGTAAGAGGGTAAAGACTCTTTCTCCACCGTTGCAAAAACCTCATACTTGTACACCGCTTCTTCCACATTCTACTCTTCTCAAAATTCCAATCCAATCCATGTTTGCTTCAGTGACCAACAGCAGCACCAATATTTTACGCCACTGCGCTCTCCTGCGTCCACGTGTCACTCCCATATTCCTCTCTCTGCTTCACAGGCTCGGTGCCTCAGCTCCAATGGACAACAATGCCCGCAGCAACCCCTTCTCCTCGTACGCTCACGCCTCTCCGAGCACTGGCAGAGGAAAGGCTTTTGATATGAGAAATGATAGAGAGAGAACAAGAGGGCGTGGAGGTGGGAGTGGCTCAGGAAAGGACAAAATTGATTCTCTTGGTAGACTCCTGACACGAATTTTACGGCATATGGCATCTGAATTGAATTTGAATATGCGGAGTGATGGTTATGTAAAAGTTAATGATTTGCTAAAGCTGAATCTGAAGACATTTGCTAATATTCCACTGAAATTGCACACTATTGATGATATTAGGGAGGCTGTTCGAAAAGATAATAAGCAGCGGTTTAGCCTCTTAGAAGAGAATGGGGAACTACTAATACGTGCAAACCAAGGCCACACAGTAAAGGCCGTTGAAACTGAAAGCTTGTTGAAACCAATCCTTTCAGCCGAAGAATTTCCAGTTTGTGTGCATGGAACCTACAGAAAGAACCTGGAATCAATTCTAGGATCTGGTCTGAAGCGCATGAAGAGATTGCATGTTCATTTTTCTTGTGGTTTACCAACAGATGGAGAAGTAATTAGTGGTAATGTGATATACTATTTAAAATGAATCCTATTTACTTATTGAAATTTAAATTTAGATATTTTGTTTTATTTTTGTTAGGCAAGTATATTTTCCTTCAGGAATATTAAGGATGTTAGTATGGTTCTCAGCTTTAAAATACCGAAGGAATGACAATCAAGATGTCTATTATAATTGATAATGTAGCTTTGTACCAAAGGTGGAATCCAAATGAAAAATTTCTTGTTTTGCCTCCTACCCTTTCACTTGTGTGTTTTCCCCCGAAAGCCGGAATATTAAAAATTTTAAACTTATTTCATAAAAGAGATTCAAATAATAATTTGTCCATCCTCCGAAGTCTCAATATGGGTTAGTTAAGTCAGTAACTTGGAAGCAAAATACCTGTATACTTTAGTGCTTTTTATTAGTGACTAATCATTTCTCTGCAATCCTATTATAGATAATTGTTTCAATTTAGCAATACAATATCTTTCACAGTTACTATTAATGATCACAGCTTGGATCTATTCGCATCACTTTATCCCTTTGCAACCTATCTGTTGGAGGGTGGAGACCTCGGAATTGGAAATCCCCTTTTTTTGGCTGACAAGGGAGTTACTGTGTCCTTTGAAATTTGTTTAGAATATTATAGTTGTTGCATAGACCATTTTACTCAATTCTTTGAAGAAAACCGTCTCGGCTTTTCAAGTCCTAATGTGTAGAGTGATCTTTATTAGTTTTCTGTTATTTCATTAGTTGCAGTAAGTTCTAGTACTTTGACTGGCCTCTTGTGTGCCTGTTACTTATTATCTACATCTATTTTTCCAGGTATGAGGCAGGATGTCAATGTTCTGATCTTTCTAGACGTTAGAAAAGCATTAGAAGAAGGTATGAAGCTTTACATTTCTGACAACAAGGTGATCTTGACGGAAGGTTTTGATGGTGTTGTTCCTGCCAAGTATTTTGAAAAGATAGAATCATGGCCCAGCAGACAGCCCATTCCTTTTTAAAGTTCTCTTACAATTTTGCTTTTACTTAGGATCACAGTACGTTGAGGTTTACTAGATGATTGTGTAAACCTCTCACAAGAATTACTACTTGATTCCTAGTTTTTGTTTTTTTTAATGATTAAGTTTACTTTGGGTCATTGAATTATATATACTATGTTTTTCTTTTTGCCAGATTGAGTTATATATATGTAAAGATTTTCTTTTGACGGAATGAATATATATATATATATATATATATATGTGTGTGTGTG
>Glyma17g37310.2 sequence type=CDS gene model=Glyma17g37310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTTGCTTCAGTGACCAACAGCAGCACCAATATTTTACGCCACTGCGCTCTCCTGCGTCCACGTGTCACTCCCATATTCCTCTCTCTGCTTCACAGGCTCGGTGCCTCAGCTCCAATGGACAACAATGCCCGCAGCAACCCCTTCTCCTCGTACGCTCACGCCTCTCCGAGCACTGGCAGAGGAAAGGCTTTTGATATGAGAAATGATAGAGAGAGAACAAGAGGGCGTGGAGGTGGGAGTGGCTCAGGAAAGGACAAAATTGATTCTCTTGGTAGACTCCTGACACGAATTTTACGGCATATGGCATCTGAATTGAATTTGAATATGCGGAGTGATGGTTATGTAAAAGTTAATGATTTGCTAAAGCTGAATCTGAAGACATTTGCTAATATTCCACTGAAATTGCACACTATTGATGATATTAGGGAGGCTGTTCGAAAAGATAATAAGCAGCGGTTTAGCCTCTTAGAAGAGAATGGGGAACTACTAATACGTGCAAACCAAGGCCACACAGTAAAGGCCGTTGAAACTGAAAGCTTGTTGAAACCAATCCTTTCAGCCGAAGAATTTCCAGTTTGTGTGCATGGAACCTACAGAAAGAACCTGGAATCAATTCTAGGATCTGGTCTGAAGCGCATGAAGAGATTGCATGTTCATTTTTCTTGTGGTTTACCAACAGATGGAGAAGTAATTAGTGTTACTATTAATGATCACAGCTTGGATCTATTCGCATCACTTTATCCCTTTGCAACCTATCTGTTGGAGGGTGGAGACCTCGGAATTGGAAATCCCCTTTTTTTGGCTGACAAGGGAGTTACTGTGTCCTTTGAAATTTGTTTAGAATATTATAGTTGTTGCATAGACCATTTTACTCAATTCTTTGAAGAAAACCGTCTCGGCTTTTCAAGTCCTAATGTGTAG >Glyma17g37310.3 sequence type=CDS gene model=Glyma17g37310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTTGCTTCAGTGACCAACAGCAGCACCAATATTTTACGCCACTGCGCTCTCCTGCGTCCACGTGTCACTCCCATATTCCTCTCTCTGCTTCACAGGCTCGGTGCCTCAGCTCCAATGGACAACAATGCCCGCAGCAACCCCTTCTCCTCGTACGCTCACGCCTCTCCGAGCACTGGCAGAGGAAAGGCTTTTGATATGAGAAATGATAGAGAGAGAACAAGAGGGCGTGGAGGTGGGAGTGGCTCAGGAAAGGACAAAATTGATTCTCTTGGTAGACTCCTGACACGAATTTTACGGCATATGGCATCTGAATTGAATTTGAATATGCGGAGTGATGGTTATGTAAAAGTTAATGATTTGCTAAAGCTGAATCTGAAGACATTTGCTAATATTCCACTGAAATTGCACACTATTGATGATATTAGGGAGGCTGTTCGAAAAGATAATAAGCAGCGGTTTAGCCTCTTAGAAGAGAATGGGGAACTACTAATACGTGCAAACCAAGGCCACACAGTAAAGGCCGTTGAAACTGAAAGCTTGTTGAAACCAATCCTTTCAGCCGAAGAATTTCCAGTTTGTGTGCATGGAACCTACAGAAAGAACCTGGAATCAATTCTAGGATCTGGTCTGAAGCGCATGAAGAGATTGCATGTTCATTTTTCTTGTGGTTTACCAACAGATGGAGAAGTAATTAGTGGTATGAGGCAGGATGTCAATGTTCTGATCTTTCTAGACGTTAGAAAAGCATTAGAAGAAGGTATGAAGCTTTACATTTCTGACAACAAGGTGATCTTGACGGAAGGTTTTGATGGTGTTGTTCCTGCCAAGTATTTTGAAAAGATAGAATCATGGCCCAGCAGACAGCCCATTCCTTTTTAA >Glyma17g37310.4 sequence type=CDS gene model=Glyma17g37310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTTGCTTCAGTGACCAACAGCAGCACCAATATTTTACGCCACTGCGCTCTCCTGCGTCCACGTGTCACTCCCATATTCCTCTCTCTGCTTCACAGGCTCGGTGCCTCAGCTCCAATGGACAACAATGCCCGCAGCAACCCCTTCTCCTCGTACGCTCACGCCTCTCCGAGCACTGGCAGAGGAAAGGCTTTTGATATGAGAAATGATAGAGAGAGAACAAGAGGGCGTGGAGGTGGGAGTGGCTCAGGAAAGGACAAAATTGATTCTCTTGGTAGACTCCTGACACGAATTTTACGGCATATGGCATCTGAATTGAATTTGAATATGCGGAGTGATGGTTATGTAAAAGTTAATGATTTGCTAAAGCTGAATCTGAAGACATTTGCTAATATTCCACTGAAATTGCACACTATTGATGATATTAGGGAGGCTGTTCGAAAAGATAATAAGCAGCGGTTTAGCCTCTTAGAAGAGAATGGGGAACTACTAATACGTGCAAACCAAGGCCACACAGTAAAGGCCGTTGAAACTGAAAGCTTGTTGAAACCAATCCTTTCAGCCGAAGAATTTCCAGTTTGTGTGCATGGAACCTACAGAAAGAACCTGGAATCAATTCTAGGATCTGGTCTGAAGCGCATGAAGAGATTGCATGTTCATTTTTCTTGTGGTTTACCAACAGATGGAGAAGTAATTAGTGGTAATGTGATATACTATTTAAAATGA
>Glyma17g37310.2 sequence type=predicted peptide gene model=Glyma17g37310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFASVTNSSTNILRHCALLRPRVTPIFLSLLHRLGASAPMDNNARSNPFSSYAHASPSTGRGKAFDMRNDRERTRGRGGGSGSGKDKIDSLGRLLTRILRHMASELNLNMRSDGYVKVNDLLKLNLKTFANIPLKLHTIDDIREAVRKDNKQRFSLLEENGELLIRANQGHTVKAVETESLLKPILSAEEFPVCVHGTYRKNLESILGSGLKRMKRLHVHFSCGLPTDGEVISVTINDHSLDLFASLYPFATYLLEGGDLGIGNPLFLADKGVTVSFEICLEYYSCCIDHFTQFFEENRLGFSSPNV* >Glyma17g37310.3 sequence type=predicted peptide gene model=Glyma17g37310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFASVTNSSTNILRHCALLRPRVTPIFLSLLHRLGASAPMDNNARSNPFSSYAHASPSTGRGKAFDMRNDRERTRGRGGGSGSGKDKIDSLGRLLTRILRHMASELNLNMRSDGYVKVNDLLKLNLKTFANIPLKLHTIDDIREAVRKDNKQRFSLLEENGELLIRANQGHTVKAVETESLLKPILSAEEFPVCVHGTYRKNLESILGSGLKRMKRLHVHFSCGLPTDGEVISGMRQDVNVLIFLDVRKALEEGMKLYISDNKVILTEGFDGVVPAKYFEKIESWPSRQPIPF* >Glyma17g37310.4 sequence type=predicted peptide gene model=Glyma17g37310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFASVTNSSTNILRHCALLRPRVTPIFLSLLHRLGASAPMDNNARSNPFSSYAHASPSTGRGKAFDMRNDRERTRGRGGGSGSGKDKIDSLGRLLTRILRHMASELNLNMRSDGYVKVNDLLKLNLKTFANIPLKLHTIDDIREAVRKDNKQRFSLLEENGELLIRANQGHTVKAVETESLLKPILSAEEFPVCVHGTYRKNLESILGSGLKRMKRLHVHFSCGLPTDGEVISGNVIYYLK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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