Glyma17g37300 - SoyBase

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Report for Sequence Feature Glyma17g37300

Feature Type:	gene_model
Chromosome:	Gm17
Start:	41093411
stop:	41096322
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g37300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G06060	AT	Annotation by Michelle Graham. TAIR10: LisH and RanBPM domains containing protein \| chr1:1833071-1834516 FORWARD LENGTH=213	SoyBase	E_val: 2.00E-63	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG2659	KOG	LisH motif-containing protein	JGI		ISS
PTHR12864	Panther	RAN BINDING PROTEIN 9-RELATED	JGI		ISS
PF10607	PFAM	Ran binding protein in the microtubule-organising centre	JGI		ISS
UniRef100_C6T564	UniRef	Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6T564_SOYBN	SoyBase	E_val: 3.00E-120	ISS
UniRef100_E6NU60	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: JHL18I08.4 protein n=1 Tax=Jatropha curcas RepID=E6NU60_9ROSI	SoyBase	E_val: 7.00E-82	ISS

Expression Patterns of Glyma17g37300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g37300 not represented in the dataset	Glyma17g37300 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g37300

Paralog	Evidence	Comments
Glyma14g07670	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g37300 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g254300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g37300

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g37300

Limit To All Plant Sequences

>Glyma17g37300.3   sequence type=transcript   gene model=Glyma17g37300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGTGTAGTAATATAGTTAGTAATAACCAATTACAATACCCTTTTCTTTCTTTTGTGTTTCTTGCTTTCTTCTTCTTCGCTTTCGTCCCTTTTCGGAGTATCCCTCCCAACCATGGACGTTGATCCTTGCCAATACGAACAAATTGCTATAAATGAAAAAGATGTCAACAACATCATTCTGTCATACCTTATACATAATTGCTACAAAGAGTCATCAGAGTCATTCATTTCTTGCACTGGGATGAAGCAGCCTGCAGATCATTTGGAGAACATGGAAAAAAGAAAAAGAATCTTTCACCATGCATTGGAGGGAAATGTACTTAAGGCGATTGAGCTCACAGGGCAGCTGGCACAGGATATTCTGGAGAACAATAATGATTTGCTGTTTGATCTTCTAAGCCTTCATTTTGTAGACCTTGTCTGCTCTAAGGAATGGGCAGAAGCTTTGGAGTTTGCTCAGACCAAGTTGAGTCCTTTTAGTGTGAAGGAGCAGAAATATATGGAAAAAATAGAAGGTTTTATGTCCCTTCTTGCTTATGAGAATCCAGTGGAATGCCCAATGTTTCATCTGATTGGCTTAGACTATCGGCAACAAGTTGTGGATAGTTTGAATCAAACTATTCTCGCACACTTTAACCTTCCCATCCACACTGCCATGGAGCGGCTTATACAACAGACCTCAGTAGTTAGACAATGCTTAAGCCTGGAGGATGGGGGGCCTCCACCATTTTCCTTGAAGGATATTCTTAAAAGTCAATGAAAAGCAGTTAAATATCCACTGGGATGTTGAGGAATGAAGCATGTGTACATTGTGCCTTTTTTGCCACATAAGGGATTGGTGCATGCATGATTTGATCACTAGTGTAAAGTTGTCTTCGTATACTTTTGTATAAATTTTTTGGTAGCAGGCTATCTAGATCTTTCGGGTCATATTGCATTCTTTAGGTATTAGTGTTCCATGAAAATGGAGAAAATTGCAATTCTACCGGATTAAGATAATATTTTCTTTCTGGGGAATTTGATCTAATTGTGGCCTTAAGATGTCGTCATTCTTCCATAGTTTTCCACATTTTAGATTGTATTCAACCCCTTGTGAGGTTTAGATGACAACCATATACATTTTTTTTCCATGCCCTAATTTTTTATGCAAAACGCATCTACATCTTTTTGGCTAAATGTTCGG

>Glyma17g37300.4   sequence type=transcript   gene model=Glyma17g37300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCCTGCTTAGTTGTCACTGTTGAGAGATTTGTATCATATAAACATGAGCATTGGATTACTGGACCTCAAATTGAAGGGTGCTGAATCAATTTTTGCTCTTAATGCCACTTGAAACATCTAATTGGGTTTTTGACAATGTTGTCTGAGTTTTGTCAAATATACTGTTTTCTTGCATACCTTTGAACTGACATATCTTGTTGCCTTCTCTTGACTTTTTAATATTTCTCCCCTCCTCTCCACTTGCAGAGGATGCTGGGGATTGCTTCCTAAATCTAAATTGTTTGTAATTGGAGCATATTATAGGTAGTAAGGCCTCCTTGATGGATAAATTTCATTCATCTTTAGGAATCTTTCACCATGCATTGGAGGGAAATGTACTTAAGGCGATTGAGCTCACAGGGCAGCTGGCACAGGATATTCTGGAGAACAATAATGATTTGCTGTTTGATCTTCTAAGCCTTCATTTTGTAGACCTTGTCTGCTCTAAGGAATGGGCAGAAGCTTTGGAGTTTGCTCAGACCAAGTTGAGTCCTTTTAGTGTGAAGGAGCAGAAATATATGGAAAAAATAGAAGGTTTTATGTCCCTTCTTGCTTATGAGAATCCAGTGGAATGCCCAATGTTTCATCTGATTGGCTTAGACTATCGGCAACAAGTTGTGGATAGTTTGAATCAAACTATTCTCGGTTGGTTAACTTCACTATACTCTGTATACTTAATATATATTTTATTGCAAATCTCAATACTTTGTTCTATCCCTGCTAAATATGATCTACAGTCTTTGTCTTTTTGTTTATTTTTTTCTGTTGATGTTGGTGATGGCCAGCACACTTTAACCTTCCCATCCACACTGCCATGGAGCGGCTTATACAACAGACCTCAGTAGTTAGACAATGCTTAAGCCTGGAGGATGGGGGGCCTCCACCATTTTCCTTGAAGGATATTCTTAAAAGTCAATGAAAAGCAGTTAAATATCCACTGGGATGTTGAGGAATGAAGCATGTGTACATTGTGCCTTTTTTGCCACATAAGGGATTGGTGCATGCATGATTTGATCACTAGTGTAAAGTTGTCTTCGTATACTTTTGTATAAATTTTTTGGTAGCAGGCTATCTAGATCTTTCGGGTCATATTGCATTCTTTAGGTATTAGTGTTCCATGAAAATGGAGAAAATTGCAATTCTACCGGATTAAGATAATATTTTCTTTCTGGGGAATTTGATCTAATTGTGGCCTTAAGATGTCGTCATTCTTCCATAGTTTTCCACATTTTAGATTGTATTCAACCCCTTGTGAGGTTTAGATGACAACCATATACATTTTTTTTCCATGCCCTAATTTTTTATGCAAAACGCATCTACATCTTTTTGGCTAAATGTTCGG

>Glyma17g37300.5   sequence type=transcript   gene model=Glyma17g37300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGTGTAGTAATATAGTTAGTAATAACCAATTACAATACCCTTTTCTTTCTTTTGTGTTTCTTGCTTTCTTCTTCTTCGCTTTCGTCCCTTTTCGGAGTATCCCTCCCAACCATGGACGTTGATCCTTGCCAATACGAACAAATTGCTATAAATGAAAAAGATGTCAACAACATCATTCTGTCATACCTTATACATAATTGCTACAAAGAGTCATCAGAGTCATTCATTTCTTGCACTGGGATGAAGCAGCCTGCAGATCATTTGGAGAACATGGAAAAAAGAAAAAAGGATGCTGGGGATTGCTTCCTAAATCTAAATTGTTTGTAATTGGAGCATATTATAGGTAGTAAGGCCTCCTTGATGGATAAATTTCATTCATCTTTAGGAATCTTTCACCATGCATTGGAGGGAAATGTACTTAAGGCGATTGAGCTCACAGGGCAGCTGGCACAGGATATTCTGGAGAACAATAATGATTTGCTGTTTGATCTTCTAAGCCTTCATTTTGTAGACCTTGTCTGCTCTAAGGAATGGGCAGAAGCTTTGGAGTTTGCTCAGACCAAGTTGAGTCCTTTTAGTGTGAAGGAGCAGAAATATATGGAAAAAATAGAAGGTTTTATGTCCCTTCTTGCTTATGAGAATCCAGTGGAATGCCCAATGTTTCATCTGATTGGCTTAGACTATCGGCAACAAGTTGTGGATAGTTTGAATCAAACTATTCTCGCACACTTTAACCTTCCCATCCACACTGCCATGGAGCGGCTTATACAACAGACCTCAGTAGTTAGACAATGCTTAAGCCTGGAGGATGGGGGGCCTCCACCATTTTCCTTGAAGGATATTCTTAAAAGTCAATGAAAAGCAGTTAAATATCCACTGGGATGTTGAGGAATGAAGCATGTGTACATTGTGCCTTTTTTGCCACATAAGGGATTGGTGCATGCATGATTTGATCACTAGTGTAAAGTTGTCTTCGTATACTTTTGTATAAATTTTTTGGTAGCAGGCTATCTAGATCTTTCGGGTCATATTGCATTCTTTAGGTATTAGTGTTCCATGAAAATGGAGAAAATTGCAATTCTACCGGATTAAGATAATATTTTCTTTCTGGGGAATTTGATCTAATTGTGGCCTTAAGATGTCGTCATTCTTCCATAGTTTTCCACATTTTAGATTGTATTCAACCCCTTGTGAGGTTTAGATGACAACCATATACATTTTTTTTCCATGCCCTAATTTTTTATGCAAAACGCATCTACATCTTTTTGGCTAAATGTTCGG

Coding sequences of Glyma17g37300

Limit To All Plant Sequences

>Glyma17g37300.2   sequence type=CDS   gene model=Glyma17g37300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACGTTGATCCTTGCCAATACGAACAAATTGCTATAAATGAAAAAGATGTCAACAACATCATTCTGTCATACCTTATACATAATTGCTACAAAGAGTCATCAGAGTCATTCATTTCTTGCACTGGGATGAAGCAGCCTGCAGATCATTTGGAGAACATGGAAAAAAGAAAAAGAATCTTTCACCATGCATTGGAGGGAAATGTACTTAAGGCGATTGAGCTCACAGGGCAGCTGGCACAGGATATTCTGGAGAACAATAATGATTTGCTGTTTGATCTTCTAAGCCTTCATTTTGTAGACCTTGTCTGCTCTAAGGAATGGGCAGAAGCTTTGGAGTTTGCTCAGACCAAGTTGAGTCCTTTTAGTGTGAAGGAGCAGAAATATATGGAAAAAATAGAAGGTTTTATGTCCCTTCTTGCTTATGAGAATCCAGTGGAATGCCCAATGTTTCATCTGATTGGCTTAGACTATCGGCAACAAGTTGTGGATAGTTTGAATCAAACTATTCTCGGTTGGTTAACTTCACTATACTCTGTATACTTAATATATATTTTATTGCAAATCTCAATACTTTGTTCTATCCCTGCTAAATATGATCTACAGTCTTTGTCTTTTTGTTTATTTTTTTCTGTTGATGTTGGTGATGGCCAGCACACTTTAACCTTCCCATCCACACTGCCATGGAGCGGCTTATACAACAGACCTCAGTAG

>Glyma17g37300.3   sequence type=CDS   gene model=Glyma17g37300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACGTTGATCCTTGCCAATACGAACAAATTGCTATAAATGAAAAAGATGTCAACAACATCATTCTGTCATACCTTATACATAATTGCTACAAAGAGTCATCAGAGTCATTCATTTCTTGCACTGGGATGAAGCAGCCTGCAGATCATTTGGAGAACATGGAAAAAAGAAAAAGAATCTTTCACCATGCATTGGAGGGAAATGTACTTAAGGCGATTGAGCTCACAGGGCAGCTGGCACAGGATATTCTGGAGAACAATAATGATTTGCTGTTTGATCTTCTAAGCCTTCATTTTGTAGACCTTGTCTGCTCTAAGGAATGGGCAGAAGCTTTGGAGTTTGCTCAGACCAAGTTGAGTCCTTTTAGTGTGAAGGAGCAGAAATATATGGAAAAAATAGAAGGTTTTATGTCCCTTCTTGCTTATGAGAATCCAGTGGAATGCCCAATGTTTCATCTGATTGGCTTAGACTATCGGCAACAAGTTGTGGATAGTTTGAATCAAACTATTCTCGCACACTTTAACCTTCCCATCCACACTGCCATGGAGCGGCTTATACAACAGACCTCAGTAGTTAGACAATGCTTAAGCCTGGAGGATGGGGGGCCTCCACCATTTTCCTTGAAGGATATTCTTAAAAGTCAATGA

>Glyma17g37300.4   sequence type=CDS   gene model=Glyma17g37300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATAAATTTCATTCATCTTTAGGAATCTTTCACCATGCATTGGAGGGAAATGTACTTAAGGCGATTGAGCTCACAGGGCAGCTGGCACAGGATATTCTGGAGAACAATAATGATTTGCTGTTTGATCTTCTAAGCCTTCATTTTGTAGACCTTGTCTGCTCTAAGGAATGGGCAGAAGCTTTGGAGTTTGCTCAGACCAAGTTGAGTCCTTTTAGTGTGAAGGAGCAGAAATATATGGAAAAAATAGAAGGTTTTATGTCCCTTCTTGCTTATGAGAATCCAGTGGAATGCCCAATGTTTCATCTGATTGGCTTAGACTATCGGCAACAAGTTGTGGATAGTTTGAATCAAACTATTCTCGGTTGGTTAACTTCACTATACTCTGTATACTTAATATATATTTTATTGCAAATCTCAATACTTTGTTCTATCCCTGCTAAATATGATCTACAGTCTTTGTCTTTTTGTTTATTTTTTTCTGTTGATGTTGGTGATGGCCAGCACACTTTAACCTTCCCATCCACACTGCCATGGAGCGGCTTATACAACAGACCTCAGTAG

>Glyma17g37300.5   sequence type=CDS   gene model=Glyma17g37300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATAAATTTCATTCATCTTTAGGAATCTTTCACCATGCATTGGAGGGAAATGTACTTAAGGCGATTGAGCTCACAGGGCAGCTGGCACAGGATATTCTGGAGAACAATAATGATTTGCTGTTTGATCTTCTAAGCCTTCATTTTGTAGACCTTGTCTGCTCTAAGGAATGGGCAGAAGCTTTGGAGTTTGCTCAGACCAAGTTGAGTCCTTTTAGTGTGAAGGAGCAGAAATATATGGAAAAAATAGAAGGTTTTATGTCCCTTCTTGCTTATGAGAATCCAGTGGAATGCCCAATGTTTCATCTGATTGGCTTAGACTATCGGCAACAAGTTGTGGATAGTTTGAATCAAACTATTCTCGCACACTTTAACCTTCCCATCCACACTGCCATGGAGCGGCTTATACAACAGACCTCAGTAGTTAGACAATGCTTAAGCCTGGAGGATGGGGGGCCTCCACCATTTTCCTTGAAGGATATTCTTAAAAGTCAATGA

Predicted protein sequences of Glyma17g37300

Limit To All Plant Sequences

>Glyma17g37300.2   sequence type=predicted peptide   gene model=Glyma17g37300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDVDPCQYEQIAINEKDVNNIILSYLIHNCYKESSESFISCTGMKQPADHLENMEKRKRIFHHALEGNVLKAIELTGQLAQDILENNNDLLFDLLSLHFVDLVCSKEWAEALEFAQTKLSPFSVKEQKYMEKIEGFMSLLAYENPVECPMFHLIGLDYRQQVVDSLNQTILGWLTSLYSVYLIYILLQISILCSIPAKYDLQSLSFCLFFSVDVGDGQHTLTFPSTLPWSGLYNRPQ*

>Glyma17g37300.3   sequence type=predicted peptide   gene model=Glyma17g37300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDVDPCQYEQIAINEKDVNNIILSYLIHNCYKESSESFISCTGMKQPADHLENMEKRKRIFHHALEGNVLKAIELTGQLAQDILENNNDLLFDLLSLHFVDLVCSKEWAEALEFAQTKLSPFSVKEQKYMEKIEGFMSLLAYENPVECPMFHLIGLDYRQQVVDSLNQTILAHFNLPIHTAMERLIQQTSVVRQCLSLEDGGPPPFSLKDILKSQ*

>Glyma17g37300.4   sequence type=predicted peptide   gene model=Glyma17g37300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDKFHSSLGIFHHALEGNVLKAIELTGQLAQDILENNNDLLFDLLSLHFVDLVCSKEWAEALEFAQTKLSPFSVKEQKYMEKIEGFMSLLAYENPVECPMFHLIGLDYRQQVVDSLNQTILGWLTSLYSVYLIYILLQISILCSIPAKYDLQSLSFCLFFSVDVGDGQHTLTFPSTLPWSGLYNRPQ*

>Glyma17g37300.5   sequence type=predicted peptide   gene model=Glyma17g37300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDKFHSSLGIFHHALEGNVLKAIELTGQLAQDILENNNDLLFDLLSLHFVDLVCSKEWAEALEFAQTKLSPFSVKEQKYMEKIEGFMSLLAYENPVECPMFHLIGLDYRQQVVDSLNQTILAHFNLPIHTAMERLIQQTSVVRQCLSLEDGGPPPFSLKDILKSQ*

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