Glyma17g37220 - SoyBase

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Report for Sequence Feature Glyma17g37220

Feature Type:	gene_model
Chromosome:	Gm17
Start:	41024676
stop:	41028042
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g37220

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G43010	AT	Annotation by Michelle Graham. TAIR10: regulatory particle triple-A ATPase 4A \| chr5:17248563-17251014 REVERSE LENGTH=399	SoyBase	E_val: 0	ISS
GO:0006511	GO-bp	Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0030163	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein catabolic process	SoyBase	N/A	ISS
GO:0043161	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasomal ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0043248	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasome assembly	SoyBase	N/A	ISS
GO:0051788	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to misfolded protein	SoyBase	N/A	ISS
GO:0000502	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: proteasome complex	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0008540	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: proteasome regulatory particle, base subcomplex	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
GO:0016887	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATPase activity	SoyBase	N/A	ISS
GO:0017111	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity	SoyBase	N/A	ISS
KOG0651	KOG	26S proteasome regulatory complex, ATPase RPT4	JGI		ISS
PTHR23073	Panther	26S PROTEASE REGULATORY SUBUNIT	JGI		ISS
PTHR23073:SF10	Panther	26S PROTEASE REGULATORY SUBUNIT S10B	JGI		ISS
PF00004	PFAM	ATPase family associated with various cellular activities (AAA)	JGI		ISS
UniRef100_B9R7Z7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 26S protease regulatory subunit S10b, putative n=2 Tax=fabids RepID=B9R7Z7_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1MXZ0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MXZ0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g37220

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g37220 not represented in the dataset	Glyma17g37220 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g37220

Paralog	Evidence	Comments
Glyma14g07750	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g37220 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g253600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g37220

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g37220

Limit To All Plant Sequences

>Glyma17g37220.1   sequence type=CDS   gene model=Glyma17g37220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGGATGCTGCTGAAGACGCTACACGCCGCCGTAATGCGGTGGCCGAGTACCGCAAGAAGCTTCTTCAACACAAGGAATTGGAGTCCAGAGTACGATCCGTCCGAGAGAATTTGCGTGCCTCAAAGAAAGAGTTCAACAAAACTGAAGATGATCTGAAGTCTCTTCAAAGCGTTGGACAGATCATTGGCGAAGTTCTTAGGCCTCTCGACAATGAACGCTTGATTGTTAAGGCAAGCAGCGGACCTAGGTATGTGGTTGGCTGCCGCAGTAAAGTAGATAAGGAAAAACTGACTGCTGGTACGAGAGTCGTTCTTGATATGACGACGCTCACCATAATGCGGGCTCTTCCACGTGAAGTTGATCCAGTAGTTTACAATATGCTGCATGAGGATCCTGGTAATATCAGTTACTCTGCTGTTGGTGGTTTATCCGATCAGATAAGGGAATTGAGGGAATCAATTGAATTACCTCTGATGAATCCTGAGCTCTTCATTCGAGTTGGAATTAAACCTCCTAAGGGTGTTCTTCTTTATGGGCCTCCTGGTACTGGGAAAACATTGTTAGCTAGGGCAATTGCCAGTAACATAGATGCTAACTTCTTGAAGGTTGTTTCAAGTGCAATAATTGATAAATACATTGGAGAAAGTGCCAGGTTAATTCGAGAAATGTTTGGCTATGCACGTGATCACCAGCCTTGCATCATTTTTATGGATGAGATCGATGCCATTGGTGGTCGTCGTTTCAGTGAGGGAACAAGTGCTGATCGTGAGATTCAGAGAACACTAATGGAGTTGCTTAATCAACTTGATGGGTTTGATCAACTTGGGAAGGTTAAAATGATAATGGCAACAAACCGTCCTGATGTACTGGATCCTGCTCTTCTGCGTCCTGGAAGATTAGATAGAAAAATAGAAATTCCATTGCCAAATGAACAATCAAGGATGGAAATTCTCAAGATTCATGCTGCTGGGATTGCTAAGCACGGTGAAATAGATTATGAAGCTGTTGTGAAGCTTGCGGAGGGCTTTAATGGAGCTGATCTTCGAAATGTGTGCACGGAAGCTGGAATGGCAGCAATTCGTGCAGAACGTGATTATGTGATCCATGAAGATTTTATGAAGGCTGTTAGAAAACTGAATGATGCAAAGAAACTCGAATCCAGTGCTCACTACAGTGCTGATTTTGGCAAAGACTAA

Predicted protein sequences of Glyma17g37220

Limit To All Plant Sequences

>Glyma17g37220.1   sequence type=predicted peptide   gene model=Glyma17g37220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTDAAEDATRRRNAVAEYRKKLLQHKELESRVRSVRENLRASKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTAGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNISYSAVGGLSDQIRELRESIELPLMNPELFIRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMAAIRAERDYVIHEDFMKAVRKLNDAKKLESSAHYSADFGKD*

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