SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G35180 | AT | Annotation by Michelle Graham. TAIR10: TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein | chr1:12877230-12878644 REVERSE LENGTH=231 | SoyBase | E_val: 6.00E-107 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG4474 | KOG | Uncharacterized conserved protein | JGI | ISS | |
| PF03798 | PFAM | TLC domain | JGI | ISS | |
| UniRef100_G7I5C1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Transmembrane protein n=1 Tax=Medicago truncatula RepID=G7I5C1_MEDTR | SoyBase | E_val: 2.00E-125 | ISS |
| UniRef100_UPI000233E968 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233E968 related cluster n=1 Tax=unknown RepID=UPI000233E968 | SoyBase | E_val: 3.00E-178 | ISS |
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Glyma17g37210 not represented in the dataset |
Glyma17g37210 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma14g07760 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g253500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g37210.2 sequence type=transcript gene model=Glyma17g37210 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CACCAATAAATAAATGCTAAGTGTGGAACCCGCGAAAGTACGGTGACATAACTTATAACCAACAAAGCTAGAAAGCCTAATTATAGAGAACTGCAACATAACTTTACCATTGCTTTCAATTCATACATCTCTGCAATTCTGCGTGGTCACCTTCGTTCAGTTATGATTGGTGTTGGTTAAATAGCATATAACATTTTATTTTTTTCATCTCTGTCCATTGATAAATATAATAAATGTGGTGGTTGCGTAATAATTTCATGACAAGTCCATATTCCTGTCTCTACTTGGTCACACCCATATTCTGGTGGCAGTTGTGACATGGAATGCAACTTATTATTTCTTTGTGTCCTCTCAAGTGTCAATTCTTAGTTACAGCATAGAGAAATGGAAGACTATGTTATAAGGACAATTGTTGTTGGAGTTGTTTCATGGACATCAGCTTTTGTCCTAGTGAGAAGAATCTTTCCCAAGCGTTCTTTTGATTTCTGCAACCGCGTTGTGTCCACGCTCCATGCAACTTTAGCAGTCACATTGGCTTGGCTCTCTGTTGAAGATTGGAAGTGTCCAATTTGTCCTGTGGGATCAAAATCTTCACCCAAACAGATGCAAGTCCTAGCAGTTAGCCTTTCTTATCTCATTTATGATCTAGCTTGTTGTCAATTGGATGAAAGAGTGAATCTAGACAACACCGTCCACCATTTGGTAAGCATTGTTGGAATTGGAGCAGGTCTTTCCTATCAAAAGTGTGGCTCAGAAATGGTAGCGACAATATGGATAACAGAGATATCAAGCCCATTCTTGCATTTGAGGGAGCTTCTTAAAGAGCTTGGTTACAGGGATACCCTTCTTAATTTGGCTGCTGATATTCTATTCGCAGCCATATTTACATTTGCTAGGATGGTGGTCGGACCATGTATCACTTACGTAACTTTATCTGCCAACTATCCACTTCTCATAAAGGCTATGGGATTGGGTTTGCAGCTGGTAAGTGCATTCTGGTTCTTCAAAATTGTAAGAATGATGAAACACAAATTAACCAAAAGAACAACATCGAAATATGGGGTCAACCACGCCAACATCACGAGGAAGACCACTAACTCAAAATTGCAATAGAGTCAGCAATCATCAAGAATGAGAGAGACACAAGACATAAGGATACTTCAATCAGTTAAATGCATGCTTGCTACTGCATCTTGACCAACTCACTCTGACGTGGTTTTTCGAAATGCAGTACCTAATAGGCTATTATAGAAGCGTGAATGTAATTTTCAAGCTGATTGGCAGCTGAATTTGATTGGTTTGTGCACCTGGGCACGTACATTAATTTTACACTATTTCTAGTGGACAAATTTGGTTTATACGGAAGCTAGACTTCACAACGTAACAATCGCGAAGGCCACACAGCTATAACAACAGCTTAGCTAGCTGGATTGAGTTTTGGTTAATTAAAAGAAAAGATGAAACTAAAATCCAAACTCAAGATTAGAGCGTTGCTAGCTGGAATTAGTATAACAGCAGTAGCATCACTTGTAACCCTTCCCTCTTTCGATGAATACAACTTGTTATGGCTT
>Glyma17g37210.1 sequence type=CDS gene model=Glyma17g37210 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAGACTATGTTATAAGGACAATTGTTGTTGGAGTTGTTTCATGGACATCAGCTTTTGTCCTAGTGAGAAGAATCTTTCCCAAGCGTTCTTTTGATTTCTGCAACCGCGTTGTGTCCACGCTCCATGCAACTTTAGCAGTCACATTGGCTTGGCTCTCTGTTGAAGATTGGAAGTGTCCAATTTGTCCTGTGGGATCAAAATCTTCACCCAAACAGATGCAAGTCCTAGCAGTTAGCCTTTCTTATCTCATTTATGATCTAGCTTGTTGTCAATTGGATGAAAGAGTGAATCTAGACAACACCGTCCACCATTTGGTAAGCATTGTTGGAATTGGAGCAGGTCTTTCCTATCAAAAGTGTGGCTCAGAAATGGTAGCGACAATATGGATAACAGAGATATCAAGCCCATTCTTGCATTTGAGGGAGCTTCTTAAAGAGCTTGGTTACAGGGATACCCTTCTTAATTTGGCTGCTGATATTCTATTCGCAGCCATATTTACATTTGCTAGGATGGTGGTCGGACCATGTATCACTTACGTAACTTTATCTGCCAACTATCCACTTCTCATAAAGGCTATGGGATTGGGTTTGCAGCTGGTAAGTGCATTCTGGTTCTTCAAAATTGTAAGAATGATGAAACACAAATTAACCAAAAGAACAACATCGAAATATGGGGTCAACCACGCCAACATCACGAGGAAGACCACTAACTCAAAATTGCAATAG >Glyma17g37210.2 sequence type=CDS gene model=Glyma17g37210 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAGACTATGTTATAAGGACAATTGTTGTTGGAGTTGTTTCATGGACATCAGCTTTTGTCCTAGTGAGAAGAATCTTTCCCAAGCGTTCTTTTGATTTCTGCAACCGCGTTGTGTCCACGCTCCATGCAACTTTAGCAGTCACATTGGCTTGGCTCTCTGTTGAAGATTGGAAGTGTCCAATTTGTCCTGTGGGATCAAAATCTTCACCCAAACAGATGCAAGTCCTAGCAGTTAGCCTTTCTTATCTCATTTATGATCTAGCTTGTTGTCAATTGGATGAAAGAGTGAATCTAGACAACACCGTCCACCATTTGGTAAGCATTGTTGGAATTGGAGCAGGTCTTTCCTATCAAAAGTGTGGCTCAGAAATGGTAGCGACAATATGGATAACAGAGATATCAAGCCCATTCTTGCATTTGAGGGAGCTTCTTAAAGAGCTTGGTTACAGGGATACCCTTCTTAATTTGGCTGCTGATATTCTATTCGCAGCCATATTTACATTTGCTAGGATGGTGGTCGGACCATGTATCACTTACGTAACTTTATCTGCCAACTATCCACTTCTCATAAAGGCTATGGGATTGGGTTTGCAGCTGGTAAGTGCATTCTGGTTCTTCAAAATTGTAAGAATGATGAAACACAAATTAACCAAAAGAACAACATCGAAATATGGGGTCAACCACGCCAACATCACGAGGAAGACCACTAACTCAAAATTGCAATAG
>Glyma17g37210.1 sequence type=predicted peptide gene model=Glyma17g37210 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEDYVIRTIVVGVVSWTSAFVLVRRIFPKRSFDFCNRVVSTLHATLAVTLAWLSVEDWKCPICPVGSKSSPKQMQVLAVSLSYLIYDLACCQLDERVNLDNTVHHLVSIVGIGAGLSYQKCGSEMVATIWITEISSPFLHLRELLKELGYRDTLLNLAADILFAAIFTFARMVVGPCITYVTLSANYPLLIKAMGLGLQLVSAFWFFKIVRMMKHKLTKRTTSKYGVNHANITRKTTNSKLQ* >Glyma17g37210.2 sequence type=predicted peptide gene model=Glyma17g37210 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEDYVIRTIVVGVVSWTSAFVLVRRIFPKRSFDFCNRVVSTLHATLAVTLAWLSVEDWKCPICPVGSKSSPKQMQVLAVSLSYLIYDLACCQLDERVNLDNTVHHLVSIVGIGAGLSYQKCGSEMVATIWITEISSPFLHLRELLKELGYRDTLLNLAADILFAAIFTFARMVVGPCITYVTLSANYPLLIKAMGLGLQLVSAFWFFKIVRMMKHKLTKRTTSKYGVNHANITRKTTNSKLQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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