SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G42790 | AT | Annotation by Michelle Graham. TAIR10: proteasome alpha subunit F1 | chr5:17159270-17160975 REVERSE LENGTH=278 | SoyBase | E_val: 2.00E-156 | ISS |
| GO:0006511 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process | SoyBase | N/A | ISS |
| GO:0006635 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation | SoyBase | N/A | ISS |
| GO:0030163 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein catabolic process | SoyBase | N/A | ISS |
| GO:0043161 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteasomal ubiquitin-dependent protein catabolic process | SoyBase | N/A | ISS |
| GO:0043248 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteasome assembly | SoyBase | N/A | ISS |
| GO:0046685 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to arsenic-containing substance | SoyBase | N/A | ISS |
| GO:0051603 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteolysis involved in cellular protein catabolic process | SoyBase | N/A | ISS |
| GO:0051788 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to misfolded protein | SoyBase | N/A | ISS |
| GO:0080129 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteasome core complex assembly | SoyBase | N/A | ISS |
| GO:0000502 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: proteasome complex | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0005839 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: proteasome core complex | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0019773 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: proteasome core complex, alpha-subunit complex | SoyBase | N/A | ISS |
| GO:0004175 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: endopeptidase activity | SoyBase | N/A | ISS |
| GO:0004298 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: threonine-type endopeptidase activity | SoyBase | N/A | ISS |
| GO:0008233 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: peptidase activity | SoyBase | N/A | ISS |
| KOG0863 | KOG | 20S proteasome, regulatory subunit alpha type PSMA1/PRE5 | JGI | ISS | |
| PTHR11599 | Panther | PROTEASOME SUBUNIT ALPHA/BETA | JGI | ISS | |
| PTHR11599:SF12 | Panther | PROTEASOME BETA/DELTA SUBUNIT | JGI | ISS | |
| PF00227 | PFAM | Proteasome subunit | JGI | ISS | |
| PF10584 | PFAM | Proteasome subunit A N-terminal signature | JGI | ISS | |
| UniRef100_I1MXX5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Proteasome subunit alpha type n=1 Tax=Glycine max RepID=I1MXX5_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MXX5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Proteasome subunit alpha type n=1 Tax=Glycine max RepID=I1MXX5_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma17g37050 not represented in the dataset |
Glyma17g37050 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma14g07960 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g252100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g37050.1 sequence type=CDS gene model=Glyma17g37050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTCAGAAACCAGTACGACACGGACGTGACCACATGGAGCCCTGCGGGGAGGCTGTTCCAGGTGGAGTACGCTATGGAGGCGGTGAAGCAGGGCTCGGCGGCGATAGGGCTCCGATCGAAGACCCACGTGGTCCTCGCATGCGTCAACAAGGCCAACTCCGAACTCTCCTCGCACCAGAAGAAGATCTTCAAGGTCGACAATCACATCGGCGTCGCCATCGCTGGCCTCACCGCCGATGGCCGCGTCCTCTCCCGCTACATGAGATCCGAATGCATCAACTATAATTACACCTACGAGTCGCCGCTCCCCGTCGGCAGACTAGTCGTTCAGCTCGCCGATAAGGCTCAGGTTTGCACACAGCGGTCTTGGAAACGTCCTTATGGGGTTGGACTCCTGGTAGCTGGATTAGATGAATCAGGAGCTCACCTCTATTACAACTGTCCCAGTGGAAACTATTTTGAATATCAGGCTTTTGCTATTGGGTCTCGCTCTCAAGCTGCTAAGACATATTTGGAACGCAGGTTTGAGAATTTCGTGGGTTCTTCGAGAGAAGATCTGATCAAAGATGCACTTATTGCAACTAGGGAGTCCTTGCAAGGTGAAAAACTCAGGAGTTCTGTGTGCACAATTGCTGTGGTTGGAGTTGGTGAGCCTTTCCACATTTTGGATCCAGAAACTGTTCAACAGTTGATTGATACTTTTGAGATTGTGAGGGAGGAAGAAGCCGCTCCAGCCGAAGAAGAAGCTCAGCCAGCAGCCGAACAGGATGCTCCCACAGATCAGGGTGCTGCTGCTGCTGATCAAGGTGCTGCTGCTGCTGTAGACCAAGGTGGTTCTCCTATGGACATCTAA
>Glyma17g37050.1 sequence type=predicted peptide gene model=Glyma17g37050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLACVNKANSELSSHQKKIFKVDNHIGVAIAGLTADGRVLSRYMRSECINYNYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFVGSSREDLIKDALIATRESLQGEKLRSSVCTIAVVGVGEPFHILDPETVQQLIDTFEIVREEEAAPAEEEAQPAAEQDAPTDQGAAAADQGAAAAVDQGGSPMDI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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