SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G19430 | AT | Annotation by Michelle Graham. TAIR10: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:6724669-6727533 REVERSE LENGTH=724 | SoyBase | E_val: 0 | ISS |
| GO:0005768 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endosome | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0005802 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network | SoyBase | N/A | ISS |
| GO:0008168 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity | SoyBase | N/A | ISS |
| KOG1160 | KOG | Fe-S oxidoreductase | JGI | ISS | |
| PTHR13930 | Panther | RSAFD1-RELATED | JGI | ISS | |
| PF00258 | PFAM | Flavodoxin | JGI | ISS | |
| PF03141 | PFAM | Putative methyltransferase | JGI | ISS | |
| PF04055 | PFAM | Radical SAM superfamily | JGI | ISS | |
| PF08608 | PFAM | Wyosine base formation | JGI | ISS | |
| UniRef100_B9R7U0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9R7U0_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MXW0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MXW0_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma17g36880 not represented in the dataset |
Glyma17g36880 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma14g08145 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g36880.1 sequence type=CDS gene model=Glyma17g36880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCATAGCTCGGTTAGTTCGGCAAGCAAAGCGGCCTCATGGGTTGTGGGTGAAGATGACAGCTGTGACCATATTGGGTCTCTGCTTCATCTTCGTGTGGGGGGTGTTTTCGTCTTCTTCAACCTCTGTCACCACCCAAAGGGAGAGCTTTGAGGACATTGCAGAACCTGCTTCCTCTTCCTCTTCTCACAAGCCTCAAAAGTTGAAGAAAGATGAATCTAAAAAACACCCTTCTGCTGCCACGCGTCACCACCCTGAACAACATAAGGGAAAAGACAACAACAACGACAACAAAGAGAAGAAACACGTGCATAAGGAGGATAATAATAAGGAGAAAGGGAATCATCAAGGGAATGAAGATCCTCAACCACAACATGACCAGGAAGAAGAGAAAGAGAAAGAGAAAGAGGAGGTGGAGGTGGAGGGTGAGGCCGATGTGGATGCTGGCGGCGGCGATTTGGCTGAATCTGTGGATCAGGGCGACTCTGATGAGGCGGTGGAAGATGTGGAGGAGGTGAGAAAAGCAAGCAAGGGAAAGGGAAAGGTGAAAGGACCCTTGTTTGATCCAAATGCTACCTATAGCTGGAAACTGTGTAGCACTAGAAGCAAGCATAATTACATTCCCTGCATTGATATTGAAGTTGGTGGTGGGAAGGTACCTAGTTACCGGCACACGGAGAGGAGTTGCCCGAGGACACCCTTCATGTGTCTGGTTCCTCTTCCTCATGAAGGGTATGAGTCTCCACTACCCTGGCCTGAAAGCAAATTGAAGATATTGTACAAGAATGTTGCACACCCGAAACTAGCTGCATACGTAAAAAGGCATAATTGGTTGATGGAGTCTGGAGAGTATCTTACTTTTCCCCAAAACCAATCTGAGTTCAAGGGAGGGATTCTTCACTATCTTGAGTCCATTGAAGAGATGGTACCAGACATTGAATGGGGTAAAAATATTCGTGTTGTCCTGGACATTGGATGTACAGATTCAAGCTTGGCAGCTGCTCTCTTTGACAAGGAGATTTTAACATTATCACTAGGCTTGAAGAATGACCTAGTGGACTTAGCTCAGGTGGCGCTTGAGCGGGGCTTCCCAGCAGTGATTAGTCCTTTAGGTAGAAGGAGGCTTCCTTTTCCAAGTCAAAGTTTTGATGCTATACATTGTGGGGGTTGCAGCATACCTTGGCATTCCAATGGTGGTAAGCTTCTATTAGAGATGAATCGGATTCTACGACCTGGTGGATACTTTATTATGTCAACTAAACATGACAGCATTGAAGAAGAAGAAGCCATGACCACATTAACCGCATCTATTTGTTGGAATGTTCTGGCGCATAAAAGTGATGATGTTGGCGAAGTTGGAGTTAAAATATATCAAAAGCCTGAAGGAAATGACATTTACGAATTGAGAAGGAAGAAGGTTCCACCAATTTGCAAAGAAAATGAAAATCCTGATGCAGCCTGGTATGTTCCCATAAAGACTTGTTTGCACACCATTCCAATTGGAATTGAACTACATGGAGCAGAGTGGCCTGAGGAATGGCCCAAGAGGCTCGAATCTTATCCTGACTGGGTGAACGACAAAGAGAAAGTGGTTGCAGACACCAACCACTGGAATGCTGTTGCTAATAAGTCATATCTCAATGGGTTGGGCATTAACTGGACAAGTATCCGAAATGTAATGGACATGAAATCTGTTTATGGAGGATTGGCTGTTGCTCTCTCTCAACAAAAGGTCTGGGTGATGAATGTTGTACCTGTTCATGCACCGGATACGCTTCCCATCATTTTTGAACGAGGACTAATTGGTATATACCATGATTGGTGTGAATCATTTGGCACTTATCCAAGAACATATGACCTTTTGCATGCTGATCATTTGTTCTCACGGCTCAAAAACAGGTGCAAGCAGCCTGTGACCATTGTTGTCGAGATGGACCGTATATTACGGCCAGGAGGTTGGATAATTATACGTGACAAAGTTGAAATTCTAAATCCGTTGGAGGAAATATTGAAAAGTATGCAGTGGGAGATTAGAATGACTTTTGCTCAAGACAAGGAGGGCACCGCCAAAACCCTCGCGCGTCGCCTCCACCGGCTCCTTTCCTCCAACGATGTCGCATTCGACCTCGTCGATGCGCAGCACTACGAGCCCGAGGACCTCCCCAAGGAGACGCTCATCCTCCTCGTCGCCTCCACGTGGCAGGACGGCGCTGCCCCCGCCGCCTCCCGCTTCTTCGCCACGTGGCTCGCCGACGCCGCCGCCGACTTCCGCGCCGGCTCCCTTCTCCTCTCCCGCTGCCGCTTCGCCGTCTTCGGCGTCGGGAGCCGGGCCTACGGTGACGACTCCTTCAACGCCGTCGCGAAGGGCCTCGCCATGCACCTGAGGGCACTCGGCGCGACGGAGGCCGTTCCCCTGTCCGAAGGGGACATCGACGGTGGCGATGACGTGGACGCGGTTTTCGATCGGTGGTGTGAGAAGGTGGTGGCGGTTTTGAAAGGCGTTGGTGTTGTGGAAAGCTGTGATAATGATGGTGCTGAGGAATGCGGCGTGGTTTCGAGTTCTGAAGAGGAGTCTGATGTGGAAAGTAGTGAGATTGTTGATCTTGAGGACATTGCTGGTAAAGCTCCTTCGCGGCGGAAGGTGGTGGCTAATGGGGAAGAGAGCAATGGGAAGTTGAATGGCAGTAGAGAAATGGTCACTCCGGTGATTCGAGCAAATTTAGAGAAGCAGGGGTATAAAATTATTGGGTCGCATAGTGGTGTCAAGCTTTGTAGATGGACCAAGGCGCAGCTTCGAGGTCGAGGTGGTTGCTATAAGCACTCGTTTTATGGAATTGAGAGTCACAGATGCATGGAGGCAACCCCTAGCTTGGCTTGTGCAAATAAATGTGTTTTCTGCTGGAGGCATCACACAAATCCAGTTGGGAAAAGTTGGCAGTGGCAGATGGATGATCCAATAGAGATTGTAAATTCTGCAATAGACCTGCATACAAATATGATTAAACAAATGAAAGGAGTTCCTGGAGTTACCTTGGAGCGATTATCTGAAGGTCTCTCACCACGTCATTGTGCATTATCGCTTGTTGGTGAACCTATTATGTATCCAGAGATAAATGCACTTGTGGATGAGCTGCACAAAAGGAGGATTTCCACTTTTCTAGTTACAAATGCACAATTTCCAGAGAAAATTAAGTCACTGAAACCTATCACCCAGTTATATGTAAGTGTAGATGCTGCAACAAAGGACTCTTTGAAGGCAATTGATAGACCACTCTTTGGAGATTTCTGGGAGCGATTCATTGATTCCTTGACTGCTCTAAAGGAAAAACATCAGCGAACAGTATACCGCCTGACCCTGGTGAAAGGCTGGAATACCGAAGAAGTTGATGCTTATTCTAAGCTCTTTAGTTTAGGAGAACCTGACTTTGTTGAAATCAAGGGAGTTACATATTGTGGCTCGTCCACTACGTCAAAATTGACAATGGATAATGTCCCTTGGCATGCTGATGTGAAAGCTTTTTCTGAGGCCCTAGCTTTGAAAAGCCAAGGAGAGTATGAAGTTGCATGTGAGCATGCTCACTCGTGCTGTGTCCTCTTAGCAAAAACTAATAAGTTCAAAATTGATGGCCAGTGGTATACATGGATAGACTATGAAAAATTTCATGATCTGGTGGCATCTGGAAGAACTTTTGACAGCAGAGATTACATGGCTGCCACACCATCGTGGTCCGTCTATGGATCAGAGGAAGGTGGATTTGATCCAGGACAATTGAGATACAGGAAAGAGAGACATCACAAGTCTACCCGCAATCAAGCAGGTTAG
>Glyma17g36880.1 sequence type=predicted peptide gene model=Glyma17g36880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAIARLVRQAKRPHGLWVKMTAVTILGLCFIFVWGVFSSSSTSVTTQRESFEDIAEPASSSSSHKPQKLKKDESKKHPSAATRHHPEQHKGKDNNNDNKEKKHVHKEDNNKEKGNHQGNEDPQPQHDQEEEKEKEKEEVEVEGEADVDAGGGDLAESVDQGDSDEAVEDVEEVRKASKGKGKVKGPLFDPNATYSWKLCSTRSKHNYIPCIDIEVGGGKVPSYRHTERSCPRTPFMCLVPLPHEGYESPLPWPESKLKILYKNVAHPKLAAYVKRHNWLMESGEYLTFPQNQSEFKGGILHYLESIEEMVPDIEWGKNIRVVLDIGCTDSSLAAALFDKEILTLSLGLKNDLVDLAQVALERGFPAVISPLGRRRLPFPSQSFDAIHCGGCSIPWHSNGGKLLLEMNRILRPGGYFIMSTKHDSIEEEEAMTTLTASICWNVLAHKSDDVGEVGVKIYQKPEGNDIYELRRKKVPPICKENENPDAAWYVPIKTCLHTIPIGIELHGAEWPEEWPKRLESYPDWVNDKEKVVADTNHWNAVANKSYLNGLGINWTSIRNVMDMKSVYGGLAVALSQQKVWVMNVVPVHAPDTLPIIFERGLIGIYHDWCESFGTYPRTYDLLHADHLFSRLKNRCKQPVTIVVEMDRILRPGGWIIIRDKVEILNPLEEILKSMQWEIRMTFAQDKEGTAKTLARRLHRLLSSNDVAFDLVDAQHYEPEDLPKETLILLVASTWQDGAAPAASRFFATWLADAAADFRAGSLLLSRCRFAVFGVGSRAYGDDSFNAVAKGLAMHLRALGATEAVPLSEGDIDGGDDVDAVFDRWCEKVVAVLKGVGVVESCDNDGAEECGVVSSSEEESDVESSEIVDLEDIAGKAPSRRKVVANGEESNGKLNGSREMVTPVIRANLEKQGYKIIGSHSGVKLCRWTKAQLRGRGGCYKHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVGKSWQWQMDDPIEIVNSAIDLHTNMIKQMKGVPGVTLERLSEGLSPRHCALSLVGEPIMYPEINALVDELHKRRISTFLVTNAQFPEKIKSLKPITQLYVSVDAATKDSLKAIDRPLFGDFWERFIDSLTALKEKHQRTVYRLTLVKGWNTEEVDAYSKLFSLGEPDFVEIKGVTYCGSSTTSKLTMDNVPWHADVKAFSEALALKSQGEYEVACEHAHSCCVLLAKTNKFKIDGQWYTWIDYEKFHDLVASGRTFDSRDYMAATPSWSVYGSEEGGFDPGQLRYRKERHHKSTRNQAG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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