Glyma17g36860 - SoyBase

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Report for Sequence Feature Glyma17g36860

Feature Type:	gene_model
Chromosome:	Gm17
Start:	40779987
stop:	40784051
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g36860

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G75180	AT	Annotation by Michelle Graham. TAIR10: Erythronate-4-phosphate dehydrogenase family protein \| chr1:28216150-28217911 REVERSE LENGTH=315	SoyBase	E_val: 6.00E-124	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_B9R7T7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 2-hydroxyacid dehydrogenase, putative n=1 Tax=Ricinus communis RepID=B9R7T7_RICCO	SoyBase	E_val: 5.00E-144	ISS
UniRef100_I1MXV8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MXV8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g36860

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g36860 not represented in the dataset	Glyma17g36860 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g36860

Paralog	Evidence	Comments
Glyma14g08170	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g36860 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g250200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g36860

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g36860

Limit To All Plant Sequences

>Glyma17g36860.3   sequence type=transcript   gene model=Glyma17g36860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAAAATGATCCCACAAGTATATACTATACACTTTCATAATCTACTATTATATGCTTTGTAAAGAACACGAGGTTATTATTATGATTATTATTGTTATTATTATTACAAACCTGCCACGACCACGGGGCAGGACATATATAGATGCATTGTATCAAAAGGTGGACATCAACGATCTGAAAGGTACTTTGGTTTTAGAATTTGATTGCATAATATAACACATGAGTGGTTTGTGTTTAAGGGATAACGAAGTGGCATGCCATCATATCATATCATAATCTGAGATTGTGGATGAAATATTTTTCATGGTTAGAGTTTATTTGCGGAAAAGGTGGGATTTGAATTTGTTTGTGGTTGTGCACCTTCTTACAATACACACACTTATTCAGATTTGACTCCTAGTAACAACTATGACGTGTATGTTATTAAATATATAGTTAAGAGATTTCAGACTTCATCACCCTCTTTCTTCCTCTTTTGTTGTAACTCAAGAGTTGCTGTTTTTTTTCCTCGTGACTTCTGATTTGATTTCCACCTTCACTCAAGTTTTAATTGGGAATCTGATATAGGCTTTGGAGGTTCTTCCACTTCCAAGGATGCTTTCAATTATACACTACAGAGGATTTTTCAGTGATTGAGTGAGTGGATATGAACATGGAAGGATCTTATGATTCATCATGCAATGGAGAAGCTGGTAACGAAAGCCTTCAGATCATTAAATACTCTCCTTATAAACCCTGCACCATGATATCATTATCATCACCTTGGTTTGTTCTAAGAGTGTTTTATGTGAGAGTGTGTGGCATTCAGGTTGATGAATCCACCCCAGAGTTTCTCTCTCTCAACCATATTCCTCTTAGTCCTGATACCCTTTTAGAGGTGAATGGTGTTAGGAGCAGCATTTACTCTGATGGAGAAGAGTCTTCAGTTCTGAGAAGGGATAGAGTGGATAAGAAATCTGAGGAAGCTACCTTTGTGAACACTGATAGTATACGTTTTACCGGGAGCATGAAGTTTGAGGTTTATGATAAGGAGAATTGCATTCTCTCTGGGGTTCTGGAGACGTCTAATAGCAATGGTTTTGTTGGGGAATCAAGAAGTGGTGTGAAGAGATGGAGTATGAATTGTCAAACAGAAATGTCACCTGGTTGTGGCTTCTTCAAGGGAAAACATGTTGCTGTCCCTGAATTGCCTTGTCCTGAAATTGAGGTTTATGTTGCTGGTTGCTTCTCAGGAACACCTATCATCTTAACCAAGACACTGCAACTCAATTGCCGGAAGAAGCATAACAGGAAATTCGCCTTGGATTCTATTCCAGAATATGGAACAACCGAGTGCCAGAAAGATGTATCTGATCATGGACTTGATTTGCAGGTAGTTGATTATAGAAGCTTCAAACCGGAACAAGCAGAGGATTACAACAGCATGTATTGCCAAAGAACAATATATGTAGATGAGGAAGATGGTGAACTATCATGGTTTAATGCTGGTGTAAGAGTTGGTGTTGGAATTGGGCTTGGCTTATGTGTAGGAGTTGGTATAGGAGTTAGCTTGTTAGTACGCTCATACCAAGCAACTACTCGTAATTTTAAGAGGAGGTTCATATAATATACCCCTCAAGAGTTTGAACTTATATGCTCTATATCTTCAAGGCAACAAACCATCAGTGGTATTTTTTTCCCCCTTCATAAGTCTTTAAAGAATGTTCTTGTTTCAAAGGATGGCATAGATGCTTAAATTTTGTCATCATGATGGGTTGACATCCATTGTGTGATTGATTGTGTAGGTTGTAACTAGCACATAAAAAGCGTTTTCATGTAAATGGTCAAAAAAAATATTGCTACCAGAAGTGGCTTATAGTTTTTAATTTTTATAGTTGAGGAGGTAGTTTATTTTTTAAACAGCAACATTGTCATTGTCAATTTTTCAATATCAGGATGGAATAGTGATGCAGTATATATAAATGATAAATGTATTATAAATCCCTCTTTGCAATAATTAACTAAACTGGGGATGCACCCCTAGTTCGAATTTGCCCAGAGCTAATGGCTTTACA

>Glyma17g36860.4   sequence type=transcript   gene model=Glyma17g36860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAAAATGATCCCACAAGTATATACTATACACTTTCATAATCTACTATTATATGCTTTGTAAAGAACACGAGGTTATTATTATGATTATTATTGTTATTATTATTACAAACCTGCCACGACCACGGGGCAGGACATATATAGATGCATTGTATCAAAAGGTGGACATCAACGATCTGAAAGGTACTTTGGTTTTAGAATTTGATTGCATAATATAACACATGAGTGGTTTGTGTTTAAGGGATAACGAAGTGGCATGCCATCATATCATATCATAATCTGAGATTGTGGATGAAATATTTTTCATGGTTAGAGTTTATTTGCGGAAAAGGTTTTAATTGGGAATCTGATATAGGCTTTGGAGGTTCTTCCACTTCCAAGGATGCTTTCAATTATACACTACAGAGGATTTTTCAGTGATTGAGTGAGTGGATATGAACATGGAAGGATCTTATGATTCATCATGCAATGGAGAAGCTGGTAACGAAAGCCTTCAGATCATTAAATACTCTCCTTATAAACCCTGCACCATGATATCATTATCATCACCTTGGTTTGTTCTAAGAGTGTTTTATGTGAGAGTGTGTGGCATTCAGGTTGATGAATCCACCCCAGAGTTTCTCTCTCTCAACCATATTCCTCTTAGTCCTGATACCCTTTTAGAGGTGAATGGTGTTAGGAGCAGCATTTACTCTGATGGAGAAGAGTCTTCAGTTCTGAGAAGGGATAGAGTGGATAAGAAATCTGAGGAAGCTACCTTTGTGAACACTGATAGTATACGTTTTACCGGGAGCATGAAGTTTGAGGTTTATGATAAGGAGAATTGCATTCTCTCTGGGGTTCTGGAGACGTCTAATAGCAATGGTTTTGTTGGGGAATCAAGAAGTGGTGTGAAGAGATGGAGTATGAATTGTCAAACAGAAATGTCACCTGGTTGTGGCTTCTTCAAGGGAAAACATGTTGCTGTCCCTGAATTGCCTTGTCCTGAAATTGAGGTTTATGTTGCTGGTTGCTTCTCAGGAACACCTATCATCTTAACCAAGACACTGCAACTCAATTGCCGGAAGAAGCATAACAGGAAATTCGCCTTGGATTCTATTCCAGAATATGGAACAACCGAGTGCCAGAAAGATGTATCTGATCATGGACTTGATTTGCAGGTAGTTGATTATAGAAGCTTCAAACCGGAACAAGCAGAGGATTACAACAGCATGTATTGCCAAAGAACAATATATGTAGATGAGGAAGATGGTGAACTATCATGGTTTAATGCTGGTGTAAGAGTTGGTGTTGGAATTGGGCTTGGCTTATGTGTAGGAGTTGGTATAGGAGTTAGCTTGTTAGTACGCTCATACCAAGCAACTACTCGTAATTTTAAGAGGAGGTTCATATAATATACCCCTCAAGAGTTTGAACTTATATGCTCTATATCTTCAAGGCAACAAACCATCAGTGGTATTTTTTTCCCCCTTCATAAGTCTTTAAAGAATGTTCTTGTTTCAAAGGATGGCATAGATGCTTAAATTTTGTCATCATGATGGGTTGACATCCATTGTGTGATTGATTGTGTAGGTTGTAACTAGCACATAAAAAGCGTTTTCATGTAAATGGTCAAAAAAAATATTGCTACCAGAAGTGGCTTATAGTTTTTAATTTTTATAGTTGAGGAGGTAGTTTATTTTTTAAACAGCAACATTGTCATTGTCAATTTTTCAATATCAGGATGGAATAGTGATGCAGTATATATAAATGATAAATGTATTATAAATCCCTCTTTGCAATAATTAACTAAACTGGGGATGCACCCCTAGTTCGAATTTGCCCAGAGCTAATGGCTTTACA

Coding sequences of Glyma17g36860

Limit To All Plant Sequences

>Glyma17g36860.2   sequence type=CDS   gene model=Glyma17g36860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACATGGAAGGATCTTATGATTCATCATGCAATGGAGAAGCTGGTAACGAAAGCCTTCAGATCATTAAATACTCTCCTTATAAACCCTGCACCATGATATCATTATCATCACCTTGGTTTGTTCTAAGAGTGTTTTATGTGAGAGTGTGTGGCATTCAGGTTGATGAATCCACCCCAGAGTTTCTCTCTCTCAACCATATTCCTCTTAGTCCTGATACCCTTTTAGAGGTGAATGGTGTTAGGAGCAGCATTTACTCTGATGGAGAAGAGTCTTCAGTTCTGAGAAGGGATAGAGTGGATAAGAAATCTGAGGAAGCTACCTTTGTGAACACTGATAGTATACGTTTTACCGGGAGCATGAAGTTTGAGGTTTATGATAAGGAGAATTGCATTCTCTCTGGGGTTCTGGAGACGTCTAATAGCAATGGTTTTGTTGGGGAATCAAGAAGTGGTGTGAAGAGATGGAGTATGAATTGTCAAACAGAAATGTCACCTGGTTGTGGCTTCTTCAAGGGAAAACATGTTGCTGTCCCTGAATTGCCTTGTCCTGAAATTGAGGTTTATGTTGCTGGTTGCTTCTCAGGAACACCTATCATCTTAACCAAGACACTGCAACTCAATTGCCGGAAGAAGCATAACAGGAAATTCGCCTTGGATTCTATTCCAGAATATGGAACAACCGAGTGCCAGAAAGATGTATCTGATCATGGACTTGATTTGCAGGTAGTTGATTATAGAAGCTTCAAACCGGAACAAGCAGAGGATTACAACAGCATGTATTGCCAAAGAACAATATATGTAGATGAGGAAGATGGTGAACTATCATGGTTTAATGCTGGTGTAAGAGTTGGTGTTGGAATTGGGCTTGGCTTATGTGTAGGAGTTGGTATAGGAGTTAGCTTGTTAGTACGCTCATACCAAGCAACTACTCGTAATTTTAAGAGGAGGTTCATATAA

>Glyma17g36860.3   sequence type=CDS   gene model=Glyma17g36860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACATGGAAGGATCTTATGATTCATCATGCAATGGAGAAGCTGGTAACGAAAGCCTTCAGATCATTAAATACTCTCCTTATAAACCCTGCACCATGATATCATTATCATCACCTTGGTTTGTTCTAAGAGTGTTTTATGTGAGAGTGTGTGGCATTCAGGTTGATGAATCCACCCCAGAGTTTCTCTCTCTCAACCATATTCCTCTTAGTCCTGATACCCTTTTAGAGGTGAATGGTGTTAGGAGCAGCATTTACTCTGATGGAGAAGAGTCTTCAGTTCTGAGAAGGGATAGAGTGGATAAGAAATCTGAGGAAGCTACCTTTGTGAACACTGATAGTATACGTTTTACCGGGAGCATGAAGTTTGAGGTTTATGATAAGGAGAATTGCATTCTCTCTGGGGTTCTGGAGACGTCTAATAGCAATGGTTTTGTTGGGGAATCAAGAAGTGGTGTGAAGAGATGGAGTATGAATTGTCAAACAGAAATGTCACCTGGTTGTGGCTTCTTCAAGGGAAAACATGTTGCTGTCCCTGAATTGCCTTGTCCTGAAATTGAGGTTTATGTTGCTGGTTGCTTCTCAGGAACACCTATCATCTTAACCAAGACACTGCAACTCAATTGCCGGAAGAAGCATAACAGGAAATTCGCCTTGGATTCTATTCCAGAATATGGAACAACCGAGTGCCAGAAAGATGTATCTGATCATGGACTTGATTTGCAGGTAGTTGATTATAGAAGCTTCAAACCGGAACAAGCAGAGGATTACAACAGCATGTATTGCCAAAGAACAATATATGTAGATGAGGAAGATGGTGAACTATCATGGTTTAATGCTGGTGTAAGAGTTGGTGTTGGAATTGGGCTTGGCTTATGTGTAGGAGTTGGTATAGGAGTTAGCTTGTTAGTACGCTCATACCAAGCAACTACTCGTAATTTTAAGAGGAGGTTCATATAA

>Glyma17g36860.4   sequence type=CDS   gene model=Glyma17g36860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACATGGAAGGATCTTATGATTCATCATGCAATGGAGAAGCTGGTAACGAAAGCCTTCAGATCATTAAATACTCTCCTTATAAACCCTGCACCATGATATCATTATCATCACCTTGGTTTGTTCTAAGAGTGTTTTATGTGAGAGTGTGTGGCATTCAGGTTGATGAATCCACCCCAGAGTTTCTCTCTCTCAACCATATTCCTCTTAGTCCTGATACCCTTTTAGAGGTGAATGGTGTTAGGAGCAGCATTTACTCTGATGGAGAAGAGTCTTCAGTTCTGAGAAGGGATAGAGTGGATAAGAAATCTGAGGAAGCTACCTTTGTGAACACTGATAGTATACGTTTTACCGGGAGCATGAAGTTTGAGGTTTATGATAAGGAGAATTGCATTCTCTCTGGGGTTCTGGAGACGTCTAATAGCAATGGTTTTGTTGGGGAATCAAGAAGTGGTGTGAAGAGATGGAGTATGAATTGTCAAACAGAAATGTCACCTGGTTGTGGCTTCTTCAAGGGAAAACATGTTGCTGTCCCTGAATTGCCTTGTCCTGAAATTGAGGTTTATGTTGCTGGTTGCTTCTCAGGAACACCTATCATCTTAACCAAGACACTGCAACTCAATTGCCGGAAGAAGCATAACAGGAAATTCGCCTTGGATTCTATTCCAGAATATGGAACAACCGAGTGCCAGAAAGATGTATCTGATCATGGACTTGATTTGCAGGTAGTTGATTATAGAAGCTTCAAACCGGAACAAGCAGAGGATTACAACAGCATGTATTGCCAAAGAACAATATATGTAGATGAGGAAGATGGTGAACTATCATGGTTTAATGCTGGTGTAAGAGTTGGTGTTGGAATTGGGCTTGGCTTATGTGTAGGAGTTGGTATAGGAGTTAGCTTGTTAGTACGCTCATACCAAGCAACTACTCGTAATTTTAAGAGGAGGTTCATATAA

Predicted protein sequences of Glyma17g36860

Limit To All Plant Sequences

>Glyma17g36860.2   sequence type=predicted peptide   gene model=Glyma17g36860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNMEGSYDSSCNGEAGNESLQIIKYSPYKPCTMISLSSPWFVLRVFYVRVCGIQVDESTPEFLSLNHIPLSPDTLLEVNGVRSSIYSDGEESSVLRRDRVDKKSEEATFVNTDSIRFTGSMKFEVYDKENCILSGVLETSNSNGFVGESRSGVKRWSMNCQTEMSPGCGFFKGKHVAVPELPCPEIEVYVAGCFSGTPIILTKTLQLNCRKKHNRKFALDSIPEYGTTECQKDVSDHGLDLQVVDYRSFKPEQAEDYNSMYCQRTIYVDEEDGELSWFNAGVRVGVGIGLGLCVGVGIGVSLLVRSYQATTRNFKRRFI*

>Glyma17g36860.3   sequence type=predicted peptide   gene model=Glyma17g36860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNMEGSYDSSCNGEAGNESLQIIKYSPYKPCTMISLSSPWFVLRVFYVRVCGIQVDESTPEFLSLNHIPLSPDTLLEVNGVRSSIYSDGEESSVLRRDRVDKKSEEATFVNTDSIRFTGSMKFEVYDKENCILSGVLETSNSNGFVGESRSGVKRWSMNCQTEMSPGCGFFKGKHVAVPELPCPEIEVYVAGCFSGTPIILTKTLQLNCRKKHNRKFALDSIPEYGTTECQKDVSDHGLDLQVVDYRSFKPEQAEDYNSMYCQRTIYVDEEDGELSWFNAGVRVGVGIGLGLCVGVGIGVSLLVRSYQATTRNFKRRFI*

>Glyma17g36860.4   sequence type=predicted peptide   gene model=Glyma17g36860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNMEGSYDSSCNGEAGNESLQIIKYSPYKPCTMISLSSPWFVLRVFYVRVCGIQVDESTPEFLSLNHIPLSPDTLLEVNGVRSSIYSDGEESSVLRRDRVDKKSEEATFVNTDSIRFTGSMKFEVYDKENCILSGVLETSNSNGFVGESRSGVKRWSMNCQTEMSPGCGFFKGKHVAVPELPCPEIEVYVAGCFSGTPIILTKTLQLNCRKKHNRKFALDSIPEYGTTECQKDVSDHGLDLQVVDYRSFKPEQAEDYNSMYCQRTIYVDEEDGELSWFNAGVRVGVGIGLGLCVGVGIGVSLLVRSYQATTRNFKRRFI*

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