SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G19270 | AT | Annotation by Michelle Graham. TAIR10: DA1 | chr1:6663327-6665845 FORWARD LENGTH=532 | SoyBase | E_val: 0 | ISS |
| GO:0046621 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of organ growth | SoyBase | N/A | ISS |
| GO:0048317 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed morphogenesis | SoyBase | N/A | ISS |
| GO:0048482 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ovule morphogenesis | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| GO:0043130 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ubiquitin binding | SoyBase | N/A | ISS |
| KOG1703 | KOG | Adaptor protein Enigma and related PDZ-LIM proteins | JGI | ISS | |
| PTHR24209 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PF00412 | PFAM | LIM domain | JGI | ISS | |
| PF12315 | PFAM | Protein of unknown function (DUF3633) | JGI | ISS | |
| UniRef100_B9R7N9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Zinc ion binding protein, putative n=1 Tax=Ricinus communis RepID=B9R7N9_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0001D83C53 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0001D83C53 related cluster n=1 Tax=unknown RepID=UPI0001D83C53 | SoyBase | E_val: 0 | ISS |
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Glyma17g36620 not represented in the dataset |
Glyma17g36620 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma14g08450 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g247700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g36620.2 sequence type=CDS gene model=Glyma17g36620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTTGGCTCAGCAGAATTTTTAAAGGCTCAGACCATAATAAGCTTTCGGAAGGGCATTACTATAAAGAGGATGCGGGTTATTACTTGCCATCCACTTCGGGGGTAACAAATGATGCTTGGAACCAGAACCAGAACCAGAACGAGAATGAAGATATTGATCGTGCTATTGCGTTGTCTCTGGTGGAAGAGAGTCGGAGAGCAAACAACAATGTAAATGACTACAGATCACAATTAGAAGAAGATGAACAACTTGCTAGAGCTATAGAACAAAGTCTAAATTTGGAGTCTCCTCCCAGATATGGAAACGAAAATATGTATCAACCACCAATTCAGTATTTCCCCTTGGGGTCCAGGATTTGTGCTGGCTGCTATACTGAGATTGGTTTTGGACGATATCTAAATTGCTTGAATGCATTCTGGCATCCTGAATGCTTCCGCTGCCGTGCTTGCAACCTACCAATCTCTGATTACGAGTTCTCCACATCTGGGAATTACCCTTACCATAAATCATGCTATAAGGAAAGCTACCATCCAAAATGTGATGTCTGCAAGCACTTCATTCCAACAAATCCTGCTGGTCTTATTGAATATAGGGCACATCCATTCTGGATCCAGAAATATTGCCCTACTCATGAACATGATGGTACTCCACGCTGTTGCAGCTGTGAGCGAATGGAGTCACAAGAGGCAGGATATATTGCTCTTAAGGATGGCCGGAAGCTCTGCTTAGAGTGTCTAGATTCTTCTATCATGGATACTAATGAATGCCAACCCCTTCATGCCGATATACAAAGATTTTATGATAGCCTAAATATGAAACTGGACCAGCAAATTCCACTTCTATTGGTTGAAAGACAAGCACTGAATGAAGCAAGAGAGGGAGAGAAGAATGGCCACTATCACATGCCGGAAACCAGAGGACTCTGCCTCTCAGAGGAGCTCAGCACTTTCTCGAGACGACCTAGACTTGGGACAGCAATGGACATGAGAGCGCAGCCGTACAGACCGACTACACGCTGCGATGTGACCGCAATTCTCGTTTTATATGGTCTTCCAAGGTTGCTTACTGGATCAATCCTAGCTCATGAGATGATGCATGCATGGCTGCGGCTTAAAGGTTATCGGACTCTAAGTCAAGATGTTGAAGAAGGTATCTGTCAGGTTTTGGCTCATATGTGGTTGGAATCTGAACTTTCTTCTGCATCAGGCAGCAACTTTGTATCAGCCTCATCCTCATCTGCATCACATACATCTAGAAAAGGTAAAAGACCTCAGTTTGAGAGGAAGCTTGGGGAGTTCTTCAAGCACCAGATTGAATCAGACATTTCCCCTGTTTATGGAGATGGGTTTAGGGCAGGTCAAAAAGCAGTGCGTAAATATGGTCTACAAAGGACCCTTCACCATATCAGGATGACAGGGACTTTTCCATATTAA
>Glyma17g36620.2 sequence type=predicted peptide gene model=Glyma17g36620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGWLSRIFKGSDHNKLSEGHYYKEDAGYYLPSTSGVTNDAWNQNQNQNENEDIDRAIALSLVEESRRANNNVNDYRSQLEEDEQLARAIEQSLNLESPPRYGNENMYQPPIQYFPLGSRICAGCYTEIGFGRYLNCLNAFWHPECFRCRACNLPISDYEFSTSGNYPYHKSCYKESYHPKCDVCKHFIPTNPAGLIEYRAHPFWIQKYCPTHEHDGTPRCCSCERMESQEAGYIALKDGRKLCLECLDSSIMDTNECQPLHADIQRFYDSLNMKLDQQIPLLLVERQALNEAREGEKNGHYHMPETRGLCLSEELSTFSRRPRLGTAMDMRAQPYRPTTRCDVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYRTLSQDVEEGICQVLAHMWLESELSSASGSNFVSASSSSASHTSRKGKRPQFERKLGEFFKHQIESDISPVYGDGFRAGQKAVRKYGLQRTLHHIRMTGTFPY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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