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Report for Sequence Feature Glyma17g36580
Feature Type: gene_model
Chromosome: Gm17
Start: 40543990
stop: 40547199
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma17g36580
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G74970 AT
Annotation by Michelle Graham. TAIR10: ribosomal protein S9 | chr1:28157761-28159202 REVERSE LENGTH=208
SoyBase E_val: 2.00E-96 ISS
GO:0006412 GO-bp
Annotation by Michelle Graham. GO Biological Process: translation
SoyBase N/A ISS
GO:0000312 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plastid small ribosomal subunit
SoyBase N/A ISS
GO:0005622 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: intracellular
SoyBase N/A ISS
GO:0005840 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: ribosome
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0009570 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma
SoyBase N/A ISS
GO:0009941 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
GO:0022627 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytosolic small ribosomal subunit
SoyBase N/A ISS
GO:0003735 GO-mf
Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome
SoyBase N/A ISS
KOG1697
KOG
Mitochondrial/chloroplast ribosomal protein S9
JGI ISS
PTHR21569 Panther
RIBOSOMAL PROTEIN S9
JGI ISS
PF00380 PFAM
Ribosomal protein S9/S16
JGI ISS
UniRef100_C6SXF0 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SXF0_SOYBN
SoyBase E_val: 1.00E-145 ISS
UniRef100_P82278 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: 30S ribosomal protein S9, chloroplastic (Fragment) n=1 Tax=Spinacia oleracea RepID=RR9_SPIOL
SoyBase E_val: 5.00E-100 ISS
Expression Patterns of Glyma17g36580
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma17g36580
Paralog Evidence Comments
Glyma14g08490 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma17g36580 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.17g247300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma17g36580
Transcripts of Glyma17g36580
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma17g36580.2 sequence type=transcript gene model=Glyma17g36580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
CATCCTTACGTAGTGTACACTATCCAGTGGAGCTTGAATTTGCCAAGGCACCGAGGCAGTGGAAGGAAGACAATGGCGGTTTCTCTATCGGCGCTCACAACCTCCCTCTCTTCACTTTCCTTCTCTTCCCACATTTCCCAGAGACCAAACACTCTCTCCTTCGCCAGAACCGAATCCCTCTCCGTCTCCGTCTCGCGCTTCCCCAAAACCCCCTCCTCCCTCGTCGTTTCCGCCACCGCACTCGCGGAACCGGAAACCGAAGACCTCAAGAACTACGTCAAGTCGAGGCTCCCAGGTGGATTCGCCGCGCAAACTATCATAGGCACCGGTCGCCGTAAGAGCGCCATCGCTCGCGTCGTTCTTCAGGAAGGAACCGGCAAATTCATCATCAATTACCGTGACGCTAAGGAATATCTTCAAGGAAATCCATTGTGGCTTCAATACATTAAGGTCCCCTTAATAACTTTGGGATATGAAAGTAATTATGATGTTTTTGTCAAAGCTGAGGGTGGTGGCCTGTCTGGTCAGGCTCAGGCAATCTCTCTTGGCATTGCTCGTGCCTTGCTGAAGGTGAGCGAAGATCATAGAGTACCTTTGAGACAGGAAGGACTTCTTACAAGAGATTCCAGAGTGGTTGAGAGGAAGAAAGTTGGTCTCAAGAAAGCTCGTAAAGCCCCTCAATATTCCAAGCGTTGAGTTGTAGGTTTTTCGGGTTAGGAAAAGTAAAGAGAAATTGAAAAATATCCGAAGGCGTATGTATTCAGAATCCTGCTCCCTGTTTTCCCATCTCTTGTTTCCTTGATCTGTATGGAATTGGGAATTTTAGGTATGTAATATTTGTCTCTCCCTTTTACCCCCAACCAAAATCACATGTTTTACTATATTGCAGGTTTCTTTTCAAGACCTAAATTTTGTGGTCTTTTACTCTTCATTTCTTGTGCCTGTTTGTACCTTCATTTGGCATATTGAAATATTTGAAACAATGACATGTGAAATTTCTTACT
>Glyma17g36580.3 sequence type=transcript gene model=Glyma17g36580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
CATCCTTACGTAGTGTACACTATCCAGTGGAGCTTGAATTTGCCAAGGCACCGAGGCAGTGGAAGGAAGACAATGGCGGTTTCTCTATCGGCGCTCACAACCTCCCTCTCTTCACTTTCCTTCTCTTCCCACATTTCCCAGAGACCAAACACTCTCTCCTTCGCCAGAACCGAATCCCTCTCCGTCTCCGTCTCGCGCTTCCCCAAAACCCCCTCCTCCCTCGTCGTTTCCGCCACCGCACTCGCGGAACCGGAAACCGAAGACCTCAAGAACTACGTCAAGTCGAGGCTCCCAGGTGGATTCGCCGCGCAAACTATCATAGGCACCGGTCGCCGTAAGAGCGCCATCGCTCGCGTCGTTCTTCAGGAAGGAACCGGCAAATTCATCATCAATTACCGTGACGCTAAGGAATATCTTCAAGGAAATCCATTGTGGCTTCAATACATTAAGGTCCCCTTAATAACTTTGGGATATGAAAGTAATTATGATGTTTTTGTCAAAGCTGAGGGTGGTGGCCTGTCTGGTCAGGCTCAGGCAATCTCTCTTGGCATTGCTCGTGCCTTGCTGAAGGTGAGCGAAGATCATAGAGTACCTTTGAGACAGGAAGGACTTCTTACAAGAGATTCCAGAGTGGTTGAGAGGAAGAAAGTTGGTCTCAAGAAAGCTCGTAAAGCCCCTCAATATTCCAAGCGTTGAGGTTGGGATGTTACATGTTTTTCGGGTTAGGAAAAGTAAAGAGAAATTGAAAAATATCCGAAGGCGTATGTATTCAGAATCCTGCTCCCTGTTTTCCCATCTCTTGTTTCCTTGATCTGTATGGAATTGGGAATTTTAGGTATGTAATATTTGTCTCTCCCTTTTACCCCCAACCAAAATCACATGTTTTACTATATTGCAGGTTTCTTTTCAAGACCTAAATTTTGTGGTCTTTTACTCTTCATTTCTTGTGCCTGTTTGTACCTTCATTTGGCATATTGAAATATTTGAAACAATGACATGTGAAATTTCTTACT
Coding sequences of Glyma17g36580
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma17g36580.1 sequence type=CDS gene model=Glyma17g36580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCGGTTTCTCTATCGGCGCTCACAACCTCCCTCTCTTCACTTTCCTTCTCTTCCCACATTTCCCAGAGACCAAACACTCTCTCCTTCGCCAGAACCGAATCCCTCTCCGTCTCCGTCTCGCGCTTCCCCAAAACCCCCTCCTCCCTCGTCGTTTCCGCCACCGCACTCGCGGAACCGGAAACCGAAGACCTCAAGAACTACGTCAAGTCGAGGCTCCCAGGTGGATTCGCCGCGCAAACTATCATAGGCACCGGTCGCCGTAAGAGCGCCATCGCTCGCGTCGTTCTTCAGGAAGGAACCGGCAAATTCATCATCAATTACCGTGACGCTAAGGAATATCTTCAAGGAAATCCATTGTGGCTTCAATACATTAAGGTCCCCTTAATAACTTTGGGATATGAAAGTAATTATGATGTTTTTGTCAAAGCTGAGGGTGGTGGCCTGTCTGGTCAGGCTCAGGCAATCTCTCTTGGCATTGCTCGTGCCTTGCTGAAGGTGAGCGAAGATCATAGAGTACCTTTGAGACAGGAAGGACTTCTTACAAGAGATTCCAGAGTGGTTGAGAGGAAGAAAGTTGGTCTCAAGAAAGCTCGTAAAGCCCCTCAATATTCCAAGCGTTGA
>Glyma17g36580.2 sequence type=CDS gene model=Glyma17g36580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCGGTTTCTCTATCGGCGCTCACAACCTCCCTCTCTTCACTTTCCTTCTCTTCCCACATTTCCCAGAGACCAAACACTCTCTCCTTCGCCAGAACCGAATCCCTCTCCGTCTCCGTCTCGCGCTTCCCCAAAACCCCCTCCTCCCTCGTCGTTTCCGCCACCGCACTCGCGGAACCGGAAACCGAAGACCTCAAGAACTACGTCAAGTCGAGGCTCCCAGGTGGATTCGCCGCGCAAACTATCATAGGCACCGGTCGCCGTAAGAGCGCCATCGCTCGCGTCGTTCTTCAGGAAGGAACCGGCAAATTCATCATCAATTACCGTGACGCTAAGGAATATCTTCAAGGAAATCCATTGTGGCTTCAATACATTAAGGTCCCCTTAATAACTTTGGGATATGAAAGTAATTATGATGTTTTTGTCAAAGCTGAGGGTGGTGGCCTGTCTGGTCAGGCTCAGGCAATCTCTCTTGGCATTGCTCGTGCCTTGCTGAAGGTGAGCGAAGATCATAGAGTACCTTTGAGACAGGAAGGACTTCTTACAAGAGATTCCAGAGTGGTTGAGAGGAAGAAAGTTGGTCTCAAGAAAGCTCGTAAAGCCCCTCAATATTCCAAGCGTTGA
>Glyma17g36580.3 sequence type=CDS gene model=Glyma17g36580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCGGTTTCTCTATCGGCGCTCACAACCTCCCTCTCTTCACTTTCCTTCTCTTCCCACATTTCCCAGAGACCAAACACTCTCTCCTTCGCCAGAACCGAATCCCTCTCCGTCTCCGTCTCGCGCTTCCCCAAAACCCCCTCCTCCCTCGTCGTTTCCGCCACCGCACTCGCGGAACCGGAAACCGAAGACCTCAAGAACTACGTCAAGTCGAGGCTCCCAGGTGGATTCGCCGCGCAAACTATCATAGGCACCGGTCGCCGTAAGAGCGCCATCGCTCGCGTCGTTCTTCAGGAAGGAACCGGCAAATTCATCATCAATTACCGTGACGCTAAGGAATATCTTCAAGGAAATCCATTGTGGCTTCAATACATTAAGGTCCCCTTAATAACTTTGGGATATGAAAGTAATTATGATGTTTTTGTCAAAGCTGAGGGTGGTGGCCTGTCTGGTCAGGCTCAGGCAATCTCTCTTGGCATTGCTCGTGCCTTGCTGAAGGTGAGCGAAGATCATAGAGTACCTTTGAGACAGGAAGGACTTCTTACAAGAGATTCCAGAGTGGTTGAGAGGAAGAAAGTTGGTCTCAAGAAAGCTCGTAAAGCCCCTCAATATTCCAAGCGTTGA
Predicted protein sequences of Glyma17g36580
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma17g36580.1 sequence type=predicted peptide gene model=Glyma17g36580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAVSLSALTTSLSSLSFSSHISQRPNTLSFARTESLSVSVSRFPKTPSSLVVSATALAEPETEDLKNYVKSRLPGGFAAQTIIGTGRRKSAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLITLGYESNYDVFVKAEGGGLSGQAQAISLGIARALLKVSEDHRVPLRQEGLLTRDSRVVERKKVGLKKARKAPQYSKR*
>Glyma17g36580.2 sequence type=predicted peptide gene model=Glyma17g36580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAVSLSALTTSLSSLSFSSHISQRPNTLSFARTESLSVSVSRFPKTPSSLVVSATALAEPETEDLKNYVKSRLPGGFAAQTIIGTGRRKSAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLITLGYESNYDVFVKAEGGGLSGQAQAISLGIARALLKVSEDHRVPLRQEGLLTRDSRVVERKKVGLKKARKAPQYSKR*
>Glyma17g36580.3 sequence type=predicted peptide gene model=Glyma17g36580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAVSLSALTTSLSSLSFSSHISQRPNTLSFARTESLSVSVSRFPKTPSSLVVSATALAEPETEDLKNYVKSRLPGGFAAQTIIGTGRRKSAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLITLGYESNYDVFVKAEGGGLSGQAQAISLGIARALLKVSEDHRVPLRQEGLLTRDSRVVERKKVGLKKARKAPQYSKR*