Glyma17g36385 - SoyBase

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Report for Sequence Feature Glyma17g36385

Feature Type:	gene_model
Chromosome:	Gm17
Start:	40344484
stop:	40350237
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g36385

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G66850	AT	Annotation by Michelle Graham. TAIR10: mitogen-activated protein kinase kinase kinase 5 \| chr5:26695965-26699159 REVERSE LENGTH=716	SoyBase	E_val: 7.00E-139	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0046777	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG0198	KOG	MEKK and related serine/threonine protein kinases	JGI		ISS
PTHR24361	Panther	MITOGEN-ACTIVATED KINASE KINASE KINASE	JGI		ISS
PTHR24361:SF62	Panther		JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
UniRef100_G7J5S7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Mitogen-activated protein kinase kinase kinase n=1 Tax=Medicago truncatula RepID=G7J5S7_MEDTR	SoyBase	E_val: 1.00E-180	ISS
UniRef100_I1M8I9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1M8I9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g36385

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g36385 not represented in the dataset	Glyma17g36385 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g36385

Paralog	Evidence	Comments
Glyma14g08801	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g36385 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g245300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g36385

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g36385

Limit To All Plant Sequences

>Glyma17g36385.2   sequence type=transcript   gene model=Glyma17g36385   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAGAAAATTGAGTTATTTGGACCCTGGAGGATTGACGAAAAGAATACGCATGCTTTATTTATCACAAGTAGAGATGAATACTATATGGTACCATCAGGAAATTCTTTGACACTTGATCGAGATATTAAGGAGGAAAAGACTATTCCAGCTTGATACTGTCAAGAATTTCTTATAAGCATGGGAACAGGTTCATCTTTGAAGTATTTTTTCCTTCTTCCAATATTATTCCATTGGAGCTTCTCTGATTCCTTTTATTGAACATAATGATGCCAATTGAGCTTTAATGAGTTCTAATATGCAACGTAAGTCCGAAAAATGCATTGAAAGTCAAAGCCATGGACAGTGAAACATGCATTATATTACTGACATAGTTGGAAAATGAAAATATTAGCACAACCAAAGCCCTATATAGAAACAACGTAGGTGTTTCCGATGTTGTTTCTATGGCTTTACAATGTTCTAATTTCTACTAATTGGAACGAAATGAATCCTTAACCTTTACGTTTCACGTGATATGACCATTTTCAACAATAATATCACCACCACTCTCTCAAATGCCTCTTTCTCGCAAACCGCTTTCTCCGTCGACGTCCACCGGAGCCAAGCAAATCCCCGGCGGCGATTTTGCTCCGGCGCGGCGATTGACCAGGCAGAGGAAGCTCCGGCACCTCACTAACCAAGACACTGGCTTCTTCCATTCCGATGAGTTTTCGTTTCTTCCGGGTTCGCCGGAGTTTCGCTCCCACGGCGGTTCCGACCACCGGTCGTTCTCTGCTCTGCCGCAACCGCTGCCGCTGCCGCTTCCCGAAGCTCCGTTGACTCGTCGAGCAAAGTCAATCAGCTCCGGTTGCGTACATCGTCGTCGCCTTTCATCTTCGGTAGAACAAGATGGCTTTACTATTTCGAGGAACACAGTGTATCAAGATGCAGTGACAGTGAACAGTTTTAGCTTCAATCCGAAGATTGAAGAGGGATCTCAAAACCATAAATTTTTGTCCAGGGTGTGCCCTGAAAATAACCTTCTGGATTCACATCCCTTACCCCTTCCACCTAGAGCTTCATCACCAAAGCAATTATCTGTTGTGCTGCATCAATCAAGAATCAAGCATCACGCTACTGAAAATCTGCCTTCAGTGAAAGGTCGATGGCAGAAAGGAAAACTTATTGGACGTGGTACTTTTGGAAGTGTTTTTCATGCAACCAACATAGAAACTGGAGCCTCGTGTGCCATGAAGGAGATCAGTTTAATTGCTGATGATCCTACATATGCTGAGTGCATTAAACAACTGGAACAGGAAATCAAAATTCTCGGTCAACTACACCATCCCAACATAGTGCAGTATTATGGAAGTGAAACAGTTGGCAATCATTTGTACATATATATGGAGTATGTCTACCCGGGATCAATAAGTAAATTTTTGCGTGAACATTGTGGAGCTATGACAGAATCTGTGGTTCGCAATTTTACGAGGCATATTCTCTCTGGATTAGCTTACTTACATAGTAACAAAACCATCCACAGAGATATCAAAGGTGCAAACTTGCTGGTCAATAAATCAGGCATTGTGAAGCTTGCAGATTTTGGGCTGGCGAAAATTCCTTCAGCCACGTTCAAGGTACTGCTAGAGTCCCCACCCATACCTGAAACTTTATCTTCAGTGGGAAAGGATTTCCTCCAGCAATGTCTCCAAAGGGACCCTGCAGATCGACCATCTGCGGCAACGCTTCTTAAGCATGCCTTTGTGCAGAATTTGCATGGTCAAGGTGTTATAGTTCGTTCACAATCATATACAAGAGGAGACCTAGGACAAGGAGGTAATTCAGCTAGTCCTAGAGACACTACCAAAAATAGACGTGGCATAATGCAAGCCTCCAACAGCACACTTATTCTTAACAAAATTCAGAAATCAATCGGCAATGCTAAGGAGTCTCATCATATTAGACCTTACCATCACTCTCATGTTCCTGAAGTGAACATTCTTCAATCTTCATTGGAATCCAGCACCCTCAATTGCATGTCTGTTGCAAATTCCAGAAACGTTTCCACCGTCACGAGAATGATCACGAACTTCTGATTCATGTTACCGTAAAAAAAAAAAAAAAAAAAACTTCTGAAGCATGTCATCACGCTTAAAATTGGAGGGATGAATGAATTTTGCAAAAATTCAACTGCAGAATTAATATTGCAGGGATTTAGGAGCTGGCCATCCATGAAGTTAGAATTTTTATTTATTTAATATACTCAAAGATTGCGAGGTAAAAGATGTGATAAAATTCATATTGGTTTGTCGTAACTAGTAAGTACTATTTTTTTGTACATGGTGATAGTGAGGCTCTGCTACTTGTACTCTGGCAAGAAATTCACGTGTAAATATACAATAATATAAATTGTACGATTTTGG

Coding sequences of Glyma17g36385

Limit To All Plant Sequences

>Glyma17g36385.1   sequence type=CDS   gene model=Glyma17g36385   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTCTTTCTCGCAAACCGCTTTCTCCGTCGACGTCCACCGGAGCCAAGCAAATCCCCGGCGGCGATTTTGCTCCGGCGCGGCGATTGACCAGGCAGAGGAAGCTCCGGCACCTCACTAACCAAGACACTGGCTTCTTCCATTCCGATGAGTTTTCGTTTCTTCCGGGTTCGCCGGAGTTTCGCTCCCACGGCGGTTCCGACCACCGGTCGTTCTCTGCTCTGCCGCAACCGCTGCCGCTGCCGCTTCCCGAAGCTCCGTTGACTCGTCGAGCAAAGTCAATCAGCTCCGGTTGCGTACATCGTCGTCGCCTTTCATCTTCGGTAGAACAAGATGGCTTTACTATTTCGAGGAACACAGTGTATCAAGATGCAGTGACAGTGAACAGTTTTAGCTTCAATCCGAAGATTGAAGAGGGATCTCAAAACCATAAATTTTTGTCCAGGGTGTGCCCTGAAAATAACCTTCTGGATTCACATCCCTTACCCCTTCCACCTAGAGCTTCATCACCAAAGCAATTATCTGTTGTGCTGCATCAATCAAGAATCAAGCATCACGCTACTGAAAATCTGCCTTCAGTGAAAGGTCGATGGCAGAAAGGAAAACTTATTGGACGTGGTACTTTTGGAAGTGTTTTTCATGCAACCAACATAGAAACTGGAGCCTCGTGTGCCATGAAGGAGATCAGTTTAATTGCTGATGATCCTACATATGCTGAGTGCATTAAACAACTGGAACAGGAAATCAAAATTCTCGGTCAACTACACCATCCCAACATAGTGCAGTATTATGGAAGTGAAACAGTTGGCAATCATTTGTACATATATATGGAGTATGTCTACCCGGGATCAATAAGTAAATTTTTGCGTGAACATTGTGGAGCTATGACAGAATCTGTGGTTCGCAATTTTACGAGGCATATTCTCTCTGGATTAGCTTACTTACATAGTAACAAAACCATCCACAGAGATATCAAAGGTGCAAACTTGCTGGTCAATAAATCAGGCATTGTGAAGCTTGCAGATTTTGGGCTGGCGAAAATTCTAATGGGGAATTCATATGATCTTTCTTTTAAGGGTAGTTCTTATTGGATGGCTCCAGAGGTCGTGAAAGGTTCCATAAAGAACGAATCCAATCCTGATGTTGTCATGGCCATTGATATATGGACCTTAGGGTGCACCATTATAGAAATGTTGACAGGCAAACCTCCTTGGAGTGAAGTTGAAGGGCCTTCAGCCACGTTCAAGGTACTGCTAGAGTCCCCACCCATACCTGAAACTTTATCTTCAGTGGGAAAGGATTTCCTCCAGCAATGTCTCCAAAGGGACCCTGCAGATCGACCATCTGCGGCAACGCTTCTTAAGCATGCCTTTGTGCAGAATTTGCATGGTCAAGGTGTTATAGTTCGTTCACAATCATATACAAGAGGAGACCTAGGACAAGGAGGTAATTCAGCTAGTCCTAGAGACACTACCAAAAATAGACGTGGCATAATGCAAGCCTCCAACAGCACACTTATTCTTAACAAAATTCAGAAATCAATCGGCAATGCTAAGGAGTCTCATCATATTAGACCTTACCATCACTCTCATGTTCCTGAAGTGAACATTCTTCAATCTTCATTGGAATCCAGCACCCTCAATTGCATGTCTGTTGCAAATTCCAGAAACGTTTCCACCGTCACGAGAATGATCACGAACTTCTGA

>Glyma17g36385.2   sequence type=CDS   gene model=Glyma17g36385   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTCTTTCTCGCAAACCGCTTTCTCCGTCGACGTCCACCGGAGCCAAGCAAATCCCCGGCGGCGATTTTGCTCCGGCGCGGCGATTGACCAGGCAGAGGAAGCTCCGGCACCTCACTAACCAAGACACTGGCTTCTTCCATTCCGATGAGTTTTCGTTTCTTCCGGGTTCGCCGGAGTTTCGCTCCCACGGCGGTTCCGACCACCGGTCGTTCTCTGCTCTGCCGCAACCGCTGCCGCTGCCGCTTCCCGAAGCTCCGTTGACTCGTCGAGCAAAGTCAATCAGCTCCGGTTGCGTACATCGTCGTCGCCTTTCATCTTCGGTAGAACAAGATGGCTTTACTATTTCGAGGAACACAGTGTATCAAGATGCAGTGACAGTGAACAGTTTTAGCTTCAATCCGAAGATTGAAGAGGGATCTCAAAACCATAAATTTTTGTCCAGGGTGTGCCCTGAAAATAACCTTCTGGATTCACATCCCTTACCCCTTCCACCTAGAGCTTCATCACCAAAGCAATTATCTGTTGTGCTGCATCAATCAAGAATCAAGCATCACGCTACTGAAAATCTGCCTTCAGTGAAAGGTCGATGGCAGAAAGGAAAACTTATTGGACGTGGTACTTTTGGAAGTGTTTTTCATGCAACCAACATAGAAACTGGAGCCTCGTGTGCCATGAAGGAGATCAGTTTAATTGCTGATGATCCTACATATGCTGAGTGCATTAAACAACTGGAACAGGAAATCAAAATTCTCGGTCAACTACACCATCCCAACATAGTGCAGTATTATGGAAGTGAAACAGTTGGCAATCATTTGTACATATATATGGAGTATGTCTACCCGGGATCAATAAGTAAATTTTTGCGTGAACATTGTGGAGCTATGACAGAATCTGTGGTTCGCAATTTTACGAGGCATATTCTCTCTGGATTAGCTTACTTACATAGTAACAAAACCATCCACAGAGATATCAAAGGTGCAAACTTGCTGGTCAATAAATCAGGCATTGTGAAGCTTGCAGATTTTGGGCTGGCGAAAATTCCTTCAGCCACGTTCAAGGTACTGCTAGAGTCCCCACCCATACCTGAAACTTTATCTTCAGTGGGAAAGGATTTCCTCCAGCAATGTCTCCAAAGGGACCCTGCAGATCGACCATCTGCGGCAACGCTTCTTAAGCATGCCTTTGTGCAGAATTTGCATGGTCAAGGTGTTATAGTTCGTTCACAATCATATACAAGAGGAGACCTAGGACAAGGAGGTAATTCAGCTAGTCCTAGAGACACTACCAAAAATAGACGTGGCATAATGCAAGCCTCCAACAGCACACTTATTCTTAACAAAATTCAGAAATCAATCGGCAATGCTAAGGAGTCTCATCATATTAGACCTTACCATCACTCTCATGTTCCTGAAGTGAACATTCTTCAATCTTCATTGGAATCCAGCACCCTCAATTGCATGTCTGTTGCAAATTCCAGAAACGTTTCCACCGTCACGAGAATGATCACGAACTTCTGA

Predicted protein sequences of Glyma17g36385

Limit To All Plant Sequences

>Glyma17g36385.1   sequence type=predicted peptide   gene model=Glyma17g36385   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPLSRKPLSPSTSTGAKQIPGGDFAPARRLTRQRKLRHLTNQDTGFFHSDEFSFLPGSPEFRSHGGSDHRSFSALPQPLPLPLPEAPLTRRAKSISSGCVHRRRLSSSVEQDGFTISRNTVYQDAVTVNSFSFNPKIEEGSQNHKFLSRVCPENNLLDSHPLPLPPRASSPKQLSVVLHQSRIKHHATENLPSVKGRWQKGKLIGRGTFGSVFHATNIETGASCAMKEISLIADDPTYAECIKQLEQEIKILGQLHHPNIVQYYGSETVGNHLYIYMEYVYPGSISKFLREHCGAMTESVVRNFTRHILSGLAYLHSNKTIHRDIKGANLLVNKSGIVKLADFGLAKILMGNSYDLSFKGSSYWMAPEVVKGSIKNESNPDVVMAIDIWTLGCTIIEMLTGKPPWSEVEGPSATFKVLLESPPIPETLSSVGKDFLQQCLQRDPADRPSAATLLKHAFVQNLHGQGVIVRSQSYTRGDLGQGGNSASPRDTTKNRRGIMQASNSTLILNKIQKSIGNAKESHHIRPYHHSHVPEVNILQSSLESSTLNCMSVANSRNVSTVTRMITNF*

>Glyma17g36385.2   sequence type=predicted peptide   gene model=Glyma17g36385   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPLSRKPLSPSTSTGAKQIPGGDFAPARRLTRQRKLRHLTNQDTGFFHSDEFSFLPGSPEFRSHGGSDHRSFSALPQPLPLPLPEAPLTRRAKSISSGCVHRRRLSSSVEQDGFTISRNTVYQDAVTVNSFSFNPKIEEGSQNHKFLSRVCPENNLLDSHPLPLPPRASSPKQLSVVLHQSRIKHHATENLPSVKGRWQKGKLIGRGTFGSVFHATNIETGASCAMKEISLIADDPTYAECIKQLEQEIKILGQLHHPNIVQYYGSETVGNHLYIYMEYVYPGSISKFLREHCGAMTESVVRNFTRHILSGLAYLHSNKTIHRDIKGANLLVNKSGIVKLADFGLAKIPSATFKVLLESPPIPETLSSVGKDFLQQCLQRDPADRPSAATLLKHAFVQNLHGQGVIVRSQSYTRGDLGQGGNSASPRDTTKNRRGIMQASNSTLILNKIQKSIGNAKESHHIRPYHHSHVPEVNILQSSLESSTLNCMSVANSRNVSTVTRMITNF*

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