Glyma17g36300 - SoyBase

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Report for Sequence Feature Glyma17g36300

Feature Type:	gene_model
Chromosome:	Gm17
Start:	40253149
stop:	40256236
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g36300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G15730	AT	Annotation by Michelle Graham. TAIR10: P-loop containing nucleoside triphosphate hydrolases superfamily protein \| chr2:6849797-6851881 FORWARD LENGTH=344	SoyBase	E_val: 6.00E-155	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF00685	PFAM	Sulfotransferase domain	JGI		ISS
UniRef100_F4JKP9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: P-loop containing nucleoside triphosphate hydrolase family protein-like protein n=1 Tax=Arabidopsis thaliana RepID=F4JKP9_ARATH	SoyBase	E_val: 5.00E-149	ISS
UniRef100_I1MXR2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MXR2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g36300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g36300

Paralog	Evidence	Comments
Glyma14g08870	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g36300 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g244500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g36300

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g36300

Limit To All Plant Sequences

>Glyma17g36300.1   sequence type=CDS   gene model=Glyma17g36300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTGAACAAATATTTATCCTCAAGAAGGACTCCATGGACATTAAATCTATAAAGAAATTTCCATCAACATTGAGGTTGGTAGTTTTAGCCATGGCTGCAACTTGTGGACTATACATTTGCTCAGTTAATTTAGAGAAACCAACAAGAATTCGCACAAATAGCAAGTTGTTGGAACTAAGAGTCATCAACCAGTCATGTCATCCTTCTAGTGTGGAAGAATGGGAAGTACCCTTCTTGCATTATCCACAACCCAAAACTTACAACAGAGAGGAGTGTGCTTGCAATCCTGTACGGTTTTTTGTCATATTGACAATGCAAAGATCGGGGAGTGGATGGTTTGAGACGTTGTTGAACAGTCATATGAATGTAAGTTCCAATGGAGAGATATTTAGTGTGGCCAAAAGAAGGGAGAATGTATCTTCAATTTTGATGACAATGGATGAAGTGTTCAATCTTGATTGGTTCAGTGGTGCTTCCAAGAACGAGTGTTCCGCAGCTGTGGGCTACAAGTGGATGCTTAATCAGGGTTTGATGGAGCATCATAAGGAGATAGGGGAATACTTTGAACGGAGGAGAGTTTCTACAATATTCCTTTTCAGAAGGAATTTGCTTCGTAGAATGGTATCTGTGCTAGAAAATTCTTATGACAAAAAGGCAAAGCCATTGAATGGAACACATAAATCTCATGTCCACTCCACATTAGAGGCTGGAATTCTCGCAAAATACAGGCCATGGATCAATACCACGTTGTTGATGACAGAGCTAAATCAAACAGAGGAGACAGCTGCAAAAGCCATTGAATACTTTAAGAACACTCGCCACATTGTTCTCTACTATGAAGATCTCATAAAAAATGCCACGAAGCTGAAAGATGTACAAGAATTTCTGAGATTGCCTTTCAGAGATATGCACAGCAGGCAGGTCAAGATTCACACTGCCCCATTATTGAAGCAAATTGAAAACTGGGATGATGTGTATAAAACGCTGAGAGGCACATCATATCAGAATTTTCTCTTCTCAGACTAA

Predicted protein sequences of Glyma17g36300

Limit To All Plant Sequences

>Glyma17g36300.1   sequence type=predicted peptide   gene model=Glyma17g36300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIEQIFILKKDSMDIKSIKKFPSTLRLVVLAMAATCGLYICSVNLEKPTRIRTNSKLLELRVINQSCHPSSVEEWEVPFLHYPQPKTYNREECACNPVRFFVILTMQRSGSGWFETLLNSHMNVSSNGEIFSVAKRRENVSSILMTMDEVFNLDWFSGASKNECSAAVGYKWMLNQGLMEHHKEIGEYFERRRVSTIFLFRRNLLRRMVSVLENSYDKKAKPLNGTHKSHVHSTLEAGILAKYRPWINTTLLMTELNQTEETAAKAIEYFKNTRHIVLYYEDLIKNATKLKDVQEFLRLPFRDMHSRQVKIHTAPLLKQIENWDDVYKTLRGTSYQNFLFSD*

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