Report for Sequence Feature Glyma17g36200
Feature Type: gene_model
Chromosome: Gm17
Start: 40196298
stop: 40198204
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma17g36200
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G47410 AT
Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages. | chr1:17394818-17395508 FORWARD LENGTH=189
SoyBase E_val: 1.00E-28 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0010413 GO-bp
Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process
SoyBase N/A ISS
GO:0016926 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein desumoylation
SoyBase N/A ISS
GO:0042546 GO-bp
Annotation by Michelle Graham. GO Biological Process: cell wall biogenesis
SoyBase N/A ISS
GO:0044036 GO-bp
Annotation by Michelle Graham. GO Biological Process: cell wall macromolecule metabolic process
SoyBase N/A ISS
GO:0045492 GO-bp
Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
UniRef100_UPI000233E693 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233E693 related cluster n=1 Tax=unknown RepID=UPI000233E693
SoyBase E_val: 4.00E-153 ISS
Expression Patterns of Glyma17g36200
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma17g36200
Paralog Evidence Comments
Glyma14g08970 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma17g36200 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.17g243500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma17g36200
Coding sequences of Glyma17g36200
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma17g36200.2 sequence type=CDS gene model=Glyma17g36200 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTTTCTAGTTGTTTCAATATATATCCTCTCATGTGAAAAAGTTGATCAAGGGATTCACACCATGGGTGGTGTCTTCTACCATGAAGAAGAGCCAATAAACCATACCAAGAGATGCAAATTCCTTGCAGGGACTTTGAAAGAAGTATTTTCCCACTGTCAAACTTTAAGTTGTCGGAGGCTTTCAACTGCAAGCCTTGAGGAGGAGTGCCCCATCATTGATGATGTTGATGAGGTGGTTGTTTCAGCGGTTAGAAGTCGAGTTATGGAGAAACAAAAGCACAAGCCAAGCCCATTGAGAGAAGGCTTTTCCATGGCATATTCTCCTGCAACAAGGGAACTGTATGTCACTCACAGTCACACAATGGCACCACAAGCAAAGGTGGTAGTAGGTGATGAAGAACACAACGAAAGAGAAGAGTTCTTTTCGGTTAAAAGTTGTCTCTCGTGCTGTTCTTCTTCGAGTGCTGTGAGTGACCAAGCATTTTATTCTGTGAAGACAAACCTGTCTAGATGTTCAAGCATGAATGAGGTTGACATCTCAGAATGTTGGCGGCGTTCGATAATTCAAGAGTTTTGTCACTGCGAGGGATGGCCTTTTGGTCTGTGCCGTAAAGCTGTGTTACTTCCACCACTGCCTAAGTCGCCGTCTGAGTCATGGTTGTCACGCAAAATACAACGAAGTACCAAAGTTACCTGA
Predicted protein sequences of Glyma17g36200
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma17g36200.2 sequence type=predicted peptide gene model=Glyma17g36200 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MFLVVSIYILSCEKVDQGIHTMGGVFYHEEEPINHTKRCKFLAGTLKEVFSHCQTLSCRRLSTASLEEECPIIDDVDEVVVSAVRSRVMEKQKHKPSPLREGFSMAYSPATRELYVTHSHTMAPQAKVVVGDEEHNEREEFFSVKSCLSCCSSSSAVSDQAFYSVKTNLSRCSSMNEVDISECWRRSIIQEFCHCEGWPFGLCRKAVLLPPLPKSPSESWLSRKIQRSTKVT*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
