SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G42870 | AT | Annotation by Michelle Graham. TAIR10: phosphatidic acid phosphohydrolase 2 | chr5:17185719-17189681 REVERSE LENGTH=930 | SoyBase | E_val: 2.00E-139 | ISS |
| GO:0006629 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lipid metabolic process | SoyBase | N/A | ISS |
| GO:0016036 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0048046 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: apoplast | SoyBase | N/A | ISS |
| GO:0008195 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphatidate phosphatase activity | SoyBase | N/A | ISS |
| PTHR12181 | Panther | LIPIN | JGI | ISS | |
| PTHR12181:SF4 | Panther | LIPIN 3-RELATED | JGI | ISS | |
| PF04571 | PFAM | lipin, N-terminal conserved region | JGI | ISS | |
| PF08235 | PFAM | LNS2 (Lipin/Ned1/Smp2) | JGI | ISS | |
| UniRef100_G7I3N3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Phosphatidate phosphatase LPIN3 n=1 Tax=Medicago truncatula RepID=G7I3N3_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233E666 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233E666 related cluster n=1 Tax=unknown RepID=UPI000233E666 | SoyBase | E_val: 0 | ISS |
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Glyma17g36130 not represented in the dataset |
Glyma17g36130 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g242900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g36130.2 sequence type=transcript gene model=Glyma17g36130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAGTTTCATAAGTCGGTACCCAACATGTACTTATTCCTTAACGTGCCAGACTCAGATCTCTATTTAAGAATGTTTCGGGAAAATTCATAGCTACCATATCTCTTTCATCAATTTTTCCGAAATTAAGAAAACAAGACATACCTTATAGATTGGATCATAATTTGAACGTTTGTGACATAAATTGGATCAACATTAACTTGCAAGTTTTGATGTTTTAAATGCTCGGAGACAGATTTTATTGTATAGTAATAGTAATTCTTCTCGGATTGCTTGAGGTAGAAGAGAACTTTATTTGTATGGTAAATTTTTGTAGGCTCGATCAGGATTGTCTCTAGTAGAAGATATTAATATGCAAGCGGTGGGGAGGCTTGGCAGCTTCATCAGCCGCGGTGTCAACACCGTTTCAGGGACGTTCCTCCCTTTCGGTGGCGCGGTGGATATTGTTGTGGTTCAGCAGAAGGATGGGAGCTTCAAATCCTCTCCATGGTATGTAAGATTTGGGAAATACCACAAGGTTTTTAAGGAAGAGGAGAAGGAAAAGATAGAGGTTCATGTCAGTGTCAACGGTGTAGAACCTGATTTCAACATGTATTTGAACCGTAATGGGGAAGCTATTTTCCTCCATCATGCAGATACACAAGAAGAAGAAGAAGAAGAAGAGGAGGAGGAGGAATCTACGCTTTTTGGTGGTGAAAGTGAAACTGATGATATCACATCACCGAGTGGTAGGAGGCATTTCAAGTCCAAAAGTTGGAACTTTGATTCACCAGACAAGTCAAATTCAGATGCTAAGGTTGTTGTGGGAAGGACTAAGTCTCGCCGTGCCCGAATTCTTGGGCTTGTGTCAAGGTCTTTGAGAGGGGAAGGTGGAGATGGTGATGTGAATGGGGTGGATTTGAGGGAGCGTGCCGAGATTGCAGCCAAGTTGTTGGAGCTGAAGTGGTCCACCAATCTCAATTTTGATCATAAACTACCTTGTAGGGATAGGAAGAAGACTAGGGGTGATGCCTTGGACAACGGTTTGCCTTTACCACCGCGTAAAATGAAGGAGGAAGCTCGTTCTTGCAGTGATCAAGATGGCATCAGTTCCAAGCCTGTGTTTAATGAGATGTTGTGCCCTGCAAGTGCAGGATGTGGAGATGTTCGTGTCCATGCTCAGGAGGTCTTGCATGCTGCAACTCTAATGCTACCTGAGCTAGCATCCTTGAATCTGAAGGAAGGGAGGAACACAATAACCTTCAGTTTCCCTACGGTTAAGGGGAAGCAGCAGGTTGATGCTCACATGTATTTGTGGAAATGGAACACTCGTATAGTGATATCAGATGTAGATGGGACAATTACAAGGTCAGATGTTCTAGGTCAATTCATGCCTTTAGTAGGAATCGATTGGTCACAGACAGGAGTTGCTCATTTATTCTCAGATATCAAGGGAAATGGCTACCAGCTACTTTTTCTCAGTGCTCGTGCAATATCTCAGGCCTATCATACCAGACAATTTCTATGCAACCTTAAGCAGGATGGGAAACTTTTACCAGATGGCCCTGTTGTTATATCCCCTGATGGACTCTTTCCTTCTCTATATCGAGAAGTTATCCGGAGGGCTCCTCATGAGTTCAAGATTGCATGTTTAGAGGACATTAAGGCACTTTTTCCTCCAGATTGGAATCCGTTCTATGCTGGTTTTGGAAATAGGGATACCGATGAAGTCAGTTACCTTAAGGTTGGAATCCCAAAAGGAAAAATATTCATCATTAATCCCAGGGGAGAGATTGCTGTAAACCGTCGTTGTTTTGACACAAAATCATATACTTCTCTGCATTCTCTGGTGAATGGAATGTTCCCCCCTACAAACTCATCTGAACAGGAGGATTTTAATTCATGGAATTACTGGAAGTTACCTGAGACCTCTTCTGCTACAAATATTTGAAAGGGTCTTTTGGCATTTATCTTGTTCTGGTGCGAATGGATGTGCTGCTCCTAGAATTATATAGTATGACTAGTGTTGAAGATGCAATGCAACAAATTTAGAACTTAGATCATTGAAGATGGTTTTCAAGTCCTAATGTCCTGGACCTCTTCATGTAACCGATTAGCACTGTGTAACTAAGCTCAATGACAACAGCATCAATCTGTGGAATTCGATGTACATAATACATTTTGCACGCGTGCTTCCTGCTTCAGAATTACAACTTCTTCCTAGTCCATGGTGTGACATCAGATACCAATATTGTTTTCTTATTTGTACGGTTTGTTGTAGTGATTAATTTCACTCGATTGTCATGGATATTGCAATAAAAAAATCGTATGATGAGAATCCCATAAGTTTTTTTAACATCTTTCTCTTCTCATTATCAATATGAGTGGCTTCACCTTGCATGTATGTAATCTTGAATGATTCTCTCTACAATTTCATTTTCTCAACATGTAAACGAATGAGCATATGCTCATGTAAAAATTCAATAAAGGAACTAAGGTTGTATGCTTAAAGCATTAAATGAAAAATATCTTTCTATTTTGAAAATCCAAC
>Glyma17g36130.1 sequence type=CDS gene model=Glyma17g36130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAAGCGGTGGGGAGGCTTGGCAGCTTCATCAGCCGCGGTGTCAACACCGTTTCAGGGACGTTCCTCCCTTTCGGTGGCGCGGTGGATATTGTTGTGGTTCAGCAGAAGGATGGGAGCTTCAAATCCTCTCCATGGTATGTAAGATTTGGGAAATACCACAAGGTTTTTAAGGAAGAGGAGAAGGAAAAGATAGAGGTTCATGTCAGTGTCAACGGTGTAGAACCTGATTTCAACATGTATTTGAACCGTAATGGGGAAGCTATTTTCCTCCATCATGCAGATACACAAGAAGAAGAAGAAGAAGAAGAGGAGGAGGAGGAATCTACGCTTTTTGGTGGTGAAAGTGAAACTGATGATATCACATCACCGAGTGGTAGGAGGCATTTCAAGTCCAAAAGTTGGAACTTTGATTCACCAGACAAGTCAAATTCAGATGCTAAGGTTGTTGTGGGAAGGACTAAGTCTCGCCGTGCCCGAATTCTTGGGCTTGTGTCAAGGTCTTTGAGAGGGGAAGGTGGAGATGGTGATGTGAATGGGGTGGATTTGAGGGAGCGTGCCGAGATTGCAGCCAAGTTGTTGGAGCTGAAGTGGTCCACCAATCTCAATTTTGATCATAAACTACCTTGTAGGGATAGGAAGAAGACTAGGGGTGATGCCTTGGACAACGGTTTGCCTTTACCACCGCGTAAAATGAAGGAGGAAGCTCGTTCTTGCAGTGATCAAGATGGCATCAGTTCCAAGCCTGTGTTTAATGAGATGTTGTGCCCTGCAAGTGCAGGATGTGGAGATGTTCGTGTCCATGCTCAGGAGGTCTTGCATGCTGCAACTCTAATGCTACCTGAGGTTGCACAAAGTGAGGAACTCACTAAGAATTCTGACATTGGGAGGCCAGCAATAAAGGCCTCTGAGTTACATTCTCAGCAAAGAGATTGTTCCCATTCTGGTAGGAGTGATGCCGGGGATGTTGTAAAAACACCAAAGTTTCGAAAATCTCAAACTATCAATCTTGGTCGAAGAGATTTAGTTAAGAAGGTTAGTGCTAATACTCCAACGTCTGAACAGCTAGCATCCTTGAATCTGAAGGAAGGGAGGAACACAATAACCTTCAGTTTCCCTACGGTTAAGGGGAAGCAGCAGGTTGATGCTCACATGTATTTGTGGAAATGGAACACTCGTATAGTGATATCAGATGTAGATGGGACAATTACAAGGTCAGATGTTCTAGGTCAATTCATGCCTTTAGTAGGAATCGATTGGTCACAGACAGGAGTTGCTCATTTATTCTCAGATATCAAGGGAAATGGCTACCAGCTACTTTTTCTCAGTGCTCGTGCAATATCTCAGGCCTATCATACCAGACAATTTCTATGCAACCTTAAGCAGGATGGGAAACTTTTACCAGATGGCCCTGTTGTTATATCCCCTGATGGACTCTTTCCTTCTCTATATCGAGAAGTTATCCGGAGGGCTCCTCATGAGTTCAAGATTGCATGTTTAGAGGACATTAAGGCACTTTTTCCTCCAGATTGGAATCCGTTCTATGCTGGTTTTGGAAATAGGGATACCGATGAAGTCAGTTACCTTAAGGTTGGAATCCCAAAAGGAAAAATATTCATCATTAATCCCAGGGGAGAGATTGCTGTAAACCGTCGTTGTTTTGACACAAAATCATATACTTCTCTGCATTCTCTGGTGAATGGAATGTTCCCCCCTACAAACTCATCTGAACAGGAGGATTTTAATTCATGGAATTACTGGAAGTTACCTGAGACCTCTTCTGCTACAAATATTTGA >Glyma17g36130.2 sequence type=CDS gene model=Glyma17g36130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAAGCGGTGGGGAGGCTTGGCAGCTTCATCAGCCGCGGTGTCAACACCGTTTCAGGGACGTTCCTCCCTTTCGGTGGCGCGGTGGATATTGTTGTGGTTCAGCAGAAGGATGGGAGCTTCAAATCCTCTCCATGGTATGTAAGATTTGGGAAATACCACAAGGTTTTTAAGGAAGAGGAGAAGGAAAAGATAGAGGTTCATGTCAGTGTCAACGGTGTAGAACCTGATTTCAACATGTATTTGAACCGTAATGGGGAAGCTATTTTCCTCCATCATGCAGATACACAAGAAGAAGAAGAAGAAGAAGAGGAGGAGGAGGAATCTACGCTTTTTGGTGGTGAAAGTGAAACTGATGATATCACATCACCGAGTGGTAGGAGGCATTTCAAGTCCAAAAGTTGGAACTTTGATTCACCAGACAAGTCAAATTCAGATGCTAAGGTTGTTGTGGGAAGGACTAAGTCTCGCCGTGCCCGAATTCTTGGGCTTGTGTCAAGGTCTTTGAGAGGGGAAGGTGGAGATGGTGATGTGAATGGGGTGGATTTGAGGGAGCGTGCCGAGATTGCAGCCAAGTTGTTGGAGCTGAAGTGGTCCACCAATCTCAATTTTGATCATAAACTACCTTGTAGGGATAGGAAGAAGACTAGGGGTGATGCCTTGGACAACGGTTTGCCTTTACCACCGCGTAAAATGAAGGAGGAAGCTCGTTCTTGCAGTGATCAAGATGGCATCAGTTCCAAGCCTGTGTTTAATGAGATGTTGTGCCCTGCAAGTGCAGGATGTGGAGATGTTCGTGTCCATGCTCAGGAGGTCTTGCATGCTGCAACTCTAATGCTACCTGAGCTAGCATCCTTGAATCTGAAGGAAGGGAGGAACACAATAACCTTCAGTTTCCCTACGGTTAAGGGGAAGCAGCAGGTTGATGCTCACATGTATTTGTGGAAATGGAACACTCGTATAGTGATATCAGATGTAGATGGGACAATTACAAGGTCAGATGTTCTAGGTCAATTCATGCCTTTAGTAGGAATCGATTGGTCACAGACAGGAGTTGCTCATTTATTCTCAGATATCAAGGGAAATGGCTACCAGCTACTTTTTCTCAGTGCTCGTGCAATATCTCAGGCCTATCATACCAGACAATTTCTATGCAACCTTAAGCAGGATGGGAAACTTTTACCAGATGGCCCTGTTGTTATATCCCCTGATGGACTCTTTCCTTCTCTATATCGAGAAGTTATCCGGAGGGCTCCTCATGAGTTCAAGATTGCATGTTTAGAGGACATTAAGGCACTTTTTCCTCCAGATTGGAATCCGTTCTATGCTGGTTTTGGAAATAGGGATACCGATGAAGTCAGTTACCTTAAGGTTGGAATCCCAAAAGGAAAAATATTCATCATTAATCCCAGGGGAGAGATTGCTGTAAACCGTCGTTGTTTTGACACAAAATCATATACTTCTCTGCATTCTCTGGTGAATGGAATGTTCCCCCCTACAAACTCATCTGAACAGGAGGATTTTAATTCATGGAATTACTGGAAGTTACCTGAGACCTCTTCTGCTACAAATATTTGA
>Glyma17g36130.1 sequence type=predicted peptide gene model=Glyma17g36130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQAVGRLGSFISRGVNTVSGTFLPFGGAVDIVVVQQKDGSFKSSPWYVRFGKYHKVFKEEEKEKIEVHVSVNGVEPDFNMYLNRNGEAIFLHHADTQEEEEEEEEEEESTLFGGESETDDITSPSGRRHFKSKSWNFDSPDKSNSDAKVVVGRTKSRRARILGLVSRSLRGEGGDGDVNGVDLRERAEIAAKLLELKWSTNLNFDHKLPCRDRKKTRGDALDNGLPLPPRKMKEEARSCSDQDGISSKPVFNEMLCPASAGCGDVRVHAQEVLHAATLMLPEVAQSEELTKNSDIGRPAIKASELHSQQRDCSHSGRSDAGDVVKTPKFRKSQTINLGRRDLVKKVSANTPTSEQLASLNLKEGRNTITFSFPTVKGKQQVDAHMYLWKWNTRIVISDVDGTITRSDVLGQFMPLVGIDWSQTGVAHLFSDIKGNGYQLLFLSARAISQAYHTRQFLCNLKQDGKLLPDGPVVISPDGLFPSLYREVIRRAPHEFKIACLEDIKALFPPDWNPFYAGFGNRDTDEVSYLKVGIPKGKIFIINPRGEIAVNRRCFDTKSYTSLHSLVNGMFPPTNSSEQEDFNSWNYWKLPETSSATNI* >Glyma17g36130.2 sequence type=predicted peptide gene model=Glyma17g36130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQAVGRLGSFISRGVNTVSGTFLPFGGAVDIVVVQQKDGSFKSSPWYVRFGKYHKVFKEEEKEKIEVHVSVNGVEPDFNMYLNRNGEAIFLHHADTQEEEEEEEEEEESTLFGGESETDDITSPSGRRHFKSKSWNFDSPDKSNSDAKVVVGRTKSRRARILGLVSRSLRGEGGDGDVNGVDLRERAEIAAKLLELKWSTNLNFDHKLPCRDRKKTRGDALDNGLPLPPRKMKEEARSCSDQDGISSKPVFNEMLCPASAGCGDVRVHAQEVLHAATLMLPELASLNLKEGRNTITFSFPTVKGKQQVDAHMYLWKWNTRIVISDVDGTITRSDVLGQFMPLVGIDWSQTGVAHLFSDIKGNGYQLLFLSARAISQAYHTRQFLCNLKQDGKLLPDGPVVISPDGLFPSLYREVIRRAPHEFKIACLEDIKALFPPDWNPFYAGFGNRDTDEVSYLKVGIPKGKIFIINPRGEIAVNRRCFDTKSYTSLHSLVNGMFPPTNSSEQEDFNSWNYWKLPETSSATNI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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