SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G33330 | AT | Annotation by Michelle Graham. TAIR10: plant glycogenin-like starch initiation protein 3 | chr4:16060142-16063061 REVERSE LENGTH=596 | SoyBase | E_val: 0 | ISS |
| GO:0005982 | GO-bp | Annotation by Michelle Graham. GO Biological Process: starch metabolic process | SoyBase | N/A | ISS |
| GO:0009058 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biosynthetic process | SoyBase | N/A | ISS |
| GO:0009834 | GO-bp | Annotation by Michelle Graham. GO Biological Process: secondary cell wall biogenesis | SoyBase | N/A | ISS |
| GO:0010014 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meristem initiation | SoyBase | N/A | ISS |
| GO:0010089 | GO-bp | Annotation by Michelle Graham. GO Biological Process: xylem development | SoyBase | N/A | ISS |
| GO:0010413 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process | SoyBase | N/A | ISS |
| GO:0010417 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glucuronoxylan biosynthetic process | SoyBase | N/A | ISS |
| GO:0042546 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell wall biogenesis | SoyBase | N/A | ISS |
| GO:0044036 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell wall macromolecule metabolic process | SoyBase | N/A | ISS |
| GO:0045492 | GO-bp | Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0015020 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: glucuronosyltransferase activity | SoyBase | N/A | ISS |
| GO:0016757 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups | SoyBase | N/A | ISS |
| GO:0080116 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: glucuronoxylan glucuronosyltransferase activity | SoyBase | N/A | ISS |
| KOG1950 | KOG | Glycosyl transferase, family 8 - glycogenin | JGI | ISS | |
| PTHR11183 | Panther | GLYCOGENIN | JGI | ISS | |
| PTHR11183:SF1 | Panther | GALACTINOL SYNTHASE-RELATED | JGI | ISS | |
| PF01501 | PFAM | Glycosyl transferase family 8 | JGI | ISS | |
| UniRef100_G7I3L3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Glycogenin glucosyltransferase n=1 Tax=Medicago truncatula RepID=G7I3L3_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MXP3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MXP3_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma17g36100 not represented in the dataset |
Glyma17g36100 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma14g09070 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g242500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g36100.2 sequence type=transcript gene model=Glyma17g36100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAGGGACAAGAGAAAAAGTACTATGTGACCATTTTGTCATCTGAAAATTTTGTCTTGAAATATTTATAGGTGCCCACTGTCAACTAAACCTAAAAATATAAGCAAAACAATTTTTGCTTCCATTCTTTATAATCTCTTGCAAAAGGAAATTGATCCTCAAGGAAGGGAAAAATGGAGCTACATAAATGGCCTTTCTTGCTTTGAGATTTACTCATAATTTTCTAACAACTCCTTCCAAATCCATTGCCACTCGAACTAATCATCATATTTAACCACTACTTGATCTAAATTTCCTAGTGGGGAATTCATTTTTGTACTTACATAGTTCAGGTACCCTCTCCATTTCAGGCATTGTTGTTTTTTCCTAACGTTATTACTCAAGGGATATGGATGTTTGGAGTCTTCAAAAGTTGGTGAAGACAGCACCATCTAAAGCATTGGTCATCAGAATCAACTTGGTCTGTCTTGCCATCTTTCTGGTCGTCTATGCAACCTTTCTTCTCCGTCCATCTTCATCCGTCTATTTCGAGAATGCAGCCTCCCTTGTCCGGTGCTCCTTGCGTGAGTGCCATCACAAGGTAAGGGAGAAAAAAGCATAAAGATGAAAGCAGTGTTGGAGAGGAATGAAGATAGGAGGGCAAAGCAGAACGCGAGTAAGATAGAAGTGCCTAGTTTCTTTGGCGAAATGGGGAAAGGAATGAAGATAGGAATGGTGAACATGCAAGAAGATGATGTGAGTGAATGGAGCACCCTTGGAGAAACAAGCCACGTTTATTTCGAGAAAGTGTCACAGTTTTTCAATTGGACAGATTTATTTCCCGAATGGATAGATGAAGAGGAAGAGACCGATGTTCCATCGTGCCCCGAGATACCAATGCCGGAATTCACAGCATATGAAGGCATGGACGTGATCGTGGCCAAGTTGCCTTGCAATTACCCAAAGGAAGGGTGGGGAAGAAACGTTTTCAGGTTACAAGTTCATCTTATTGTGGCAAATTTGGCAGTGAAGAAGGGGAAGAGGGATTGGAATTGGAAGACGAAAGTGGTTTTGTGGAGCAAGTGTAGGCCAATGCTGGAGCTGTTTCGATGCAACGATTTGGTTAAGCAGGAAAATGAGTGGTGGTATTATGAGGTTGATGCAATGAGGTTGGAGCAGAAAGTTTCTTTGCCTGTTGGGTCCTGCAATTTGGCTCTGCCTCTATGGGAACAAGGAATCGACAAGGTGTACGACACGTGGAACCTGGAACAAAGCGTTAAAAGCGAAGCGCGATCAAAACGTGAGGCCTATGCAACAGTGCTCCACTCCTCAGAAGGCTACGTGTGCGGCGCAATAACGCTAGCACAAACCCTGCTCCAAACCGGAACCAAGCGTGACCTAATCCTCCTCCTGGACACCTCCATCTCCGTCGCGAAACGCCGCTCCCTCGAACTCTCCGGCTGGAAGATCCGACTCATAACCCGGATCCGAAATCCGCGGGCCGAGAATGGCACCTACAACGAGTACAACTACAGCAAGTTCCGACTCTGGCAGCTCACGGATTATGAGAGAGTGATCTTCATTGATGCTGACATCATCGTCCTCCGCAACCTTGATATTCTCTTCCACTTCCCACAGATGTCCGCTACTGGTAACGACCAGTCCATCTTCAACTCCGGCATCATGGTACTCGAGCCCTCCAACTGCACATTCCACGTTCTCATGTCGCGCCGCCACGATGTCATCTCCTACAACGGTGGCGACCAGGGTTTCCTGAATGAGATCTTCATGTGGTGGCACAGGCTTCCGCGACGGGTGAACTACTTAAAGAACTTTTGGGCCAACACGACAATAGAGGCAGGTAGGAAAAATGCAATGTTCGGGGCGGAGCCGCCGAAGCTCTACGCGATTCACTATCTAGGGCTAAAGCCATGGCATTGTTATAGGGACTACGACTGCAACTGGGATGTGGAGGATCAGAGAGTGTACGCGAGCGACGTGGCACATCGACGGTGGTGGAAGGTGCACGATGCTATGGACGAGAACTTGCAAAAGCTGTGTAGGTTAACGAGGCAACGAAGAATGGAGTTGAACTGGGAAAGGAGAAAGGCTGGGAAATTAGGGTTGCCAGATATGCATTGGAAGATCAATGTCACGGATCCCAGAAGAGCTGGCTCGATGTTGATTGGCTAGGTTAATTAGGTTCTAGTTGTTGTACAATTACACCACATTCTTTTTTCTTTTTTTTTTTGGATTTGGGGTATTTGTTTTTGTTTTAATTCATGATTTTACGTACTGAGACATTTGTGGAGGGGCTTTCCATGCGGTTTATTTATTTCTGTGAATAGGGTAGAGCATTAGATGGTTAGTCAATTAAGGAAACGGGAATAATAAAAAGAAATTCATTACAGTTTTTGTCGATCTTGATTCTTCAATATATTTTTTTTTTCCATCAAATTTAATTGATCAATTCTTTTAGCATGTGTTTGGATCACGTTCAACAAGCTCGTTTTCACACTAAAATTAATTATGTCAAAAGGAGAAAAAGACGTAAAAGCTATAAGTTGCATTCGATAGAC
>Glyma17g36100.1 sequence type=CDS gene model=Glyma17g36100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATGTTTGGAGTCTTCAAAAGTTGGTGAAGACAGCACCATCTAAAGCATTGGTCATCAGAATCAACTTGGTCTGTCTTGCCATCTTTCTGGTCGTCTATGCAACCTTTCTTCTCCGTCCATCTTCATCCGTCTATTTCGAGAATGCAGCCTCCCTTGTCCGGTGCTCCTTGCGTGAGTGCCATCACAAGGGAGAAAAAAGCATAAAGATGAAAGCAGTGTTGGAGAGGAATGAAGATAGGAGGGCAAAGCAGAACGCGAGTAAGATAGAAGTGCCTAGTTTCTTTGGCGAAATGGGGAAAGGAATGAAGATAGGAATGGTGAACATGCAAGAAGATGATGTGAGTGAATGGAGCACCCTTGGAGAAACAAGCCACGTTTATTTCGAGAAAGTGTCACAGTTTTTCAATTGGACAGATTTATTTCCCGAATGGATAGATGAAGAGGAAGAGACCGATGTTCCATCGTGCCCCGAGATACCAATGCCGGAATTCACAGCATATGAAGGCATGGACGTGATCGTGGCCAAGTTGCCTTGCAATTACCCAAAGGAAGGGTGGGGAAGAAACGTTTTCAGGTTACAAGTTCATCTTATTGTGGCAAATTTGGCAGTGAAGAAGGGGAAGAGGGATTGGAATTGGAAGACGAAAGTGGTTTTGTGGAGCAAGTGTAGGCCAATGCTGGAGCTGTTTCGATGCAACGATTTGGTTAAGCAGGAAAATGAGTGGTGGTATTATGAGGTTGATGCAATGAGGTTGGAGCAGAAAGTTTCTTTGCCTGTTGGGTCCTGCAATTTGGCTCTGCCTCTATGGGAACAAGGAATCGACAAGGTGTACGACACGTGGAACCTGGAACAAAGCGTTAAAAGCGAAGCGCGATCAAAACGTGAGGCCTATGCAACAGTGCTCCACTCCTCAGAAGGCTACGTGTGCGGCGCAATAACGCTAGCACAAACCCTGCTCCAAACCGGAACCAAGCGTGACCTAATCCTCCTCCTGGACACCTCCATCTCCGTCGCGAAACGCCGCTCCCTCGAACTCTCCGGCTGGAAGATCCGACTCATAACCCGGATCCGAAATCCGCGGGCCGAGAATGGCACCTACAACGAGTACAACTACAGCAAGTTCCGACTCTGGCAGCTCACGGATTATGAGAGAGTGATCTTCATTGATGCTGACATCATCGTCCTCCGCAACCTTGATATTCTCTTCCACTTCCCACAGATGTCCGCTACTGGTAACGACCAGTCCATCTTCAACTCCGGCATCATGGTACTCGAGCCCTCCAACTGCACATTCCACGTTCTCATGTCGCGCCGCCACGATGTCATCTCCTACAACGGTGGCGACCAGGGTTTCCTGAATGAGATCTTCATGTGGTGGCACAGGCTTCCGCGACGGGTGAACTACTTAAAGAACTTTTGGGCCAACACGACAATAGAGGCAGGTAGGAAAAATGCAATGTTCGGGGCGGAGCCGCCGAAGCTCTACGCGATTCACTATCTAGGGCTAAAGCCATGGCATTGTTATAGGGACTACGACTGCAACTGGGATGTGGAGGATCAGAGAGTGTACGCGAGCGACGTGGCACATCGACGGTGGTGGAAGGTGCACGATGCTATGGACGAGAACTTGCAAAAGCTGTGTAGGTTAACGAGGCAACGAAGAATGGAGTTGAACTGGGAAAGGAGAAAGGCTGGGAAATTAGGGTTGCCAGATATGCATTGGAAGATCAATGTCACGGATCCCAGAAGAGCTGGCTCGATGTTGATTGGCTAG >Glyma17g36100.2 sequence type=CDS gene model=Glyma17g36100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAAGCAGTGTTGGAGAGGAATGAAGATAGGAGGGCAAAGCAGAACGCGAGTAAGATAGAAGTGCCTAGTTTCTTTGGCGAAATGGGGAAAGGAATGAAGATAGGAATGGTGAACATGCAAGAAGATGATGTGAGTGAATGGAGCACCCTTGGAGAAACAAGCCACGTTTATTTCGAGAAAGTGTCACAGTTTTTCAATTGGACAGATTTATTTCCCGAATGGATAGATGAAGAGGAAGAGACCGATGTTCCATCGTGCCCCGAGATACCAATGCCGGAATTCACAGCATATGAAGGCATGGACGTGATCGTGGCCAAGTTGCCTTGCAATTACCCAAAGGAAGGGTGGGGAAGAAACGTTTTCAGGTTACAAGTTCATCTTATTGTGGCAAATTTGGCAGTGAAGAAGGGGAAGAGGGATTGGAATTGGAAGACGAAAGTGGTTTTGTGGAGCAAGTGTAGGCCAATGCTGGAGCTGTTTCGATGCAACGATTTGGTTAAGCAGGAAAATGAGTGGTGGTATTATGAGGTTGATGCAATGAGGTTGGAGCAGAAAGTTTCTTTGCCTGTTGGGTCCTGCAATTTGGCTCTGCCTCTATGGGAACAAGGAATCGACAAGGTGTACGACACGTGGAACCTGGAACAAAGCGTTAAAAGCGAAGCGCGATCAAAACGTGAGGCCTATGCAACAGTGCTCCACTCCTCAGAAGGCTACGTGTGCGGCGCAATAACGCTAGCACAAACCCTGCTCCAAACCGGAACCAAGCGTGACCTAATCCTCCTCCTGGACACCTCCATCTCCGTCGCGAAACGCCGCTCCCTCGAACTCTCCGGCTGGAAGATCCGACTCATAACCCGGATCCGAAATCCGCGGGCCGAGAATGGCACCTACAACGAGTACAACTACAGCAAGTTCCGACTCTGGCAGCTCACGGATTATGAGAGAGTGATCTTCATTGATGCTGACATCATCGTCCTCCGCAACCTTGATATTCTCTTCCACTTCCCACAGATGTCCGCTACTGGTAACGACCAGTCCATCTTCAACTCCGGCATCATGGTACTCGAGCCCTCCAACTGCACATTCCACGTTCTCATGTCGCGCCGCCACGATGTCATCTCCTACAACGGTGGCGACCAGGGTTTCCTGAATGAGATCTTCATGTGGTGGCACAGGCTTCCGCGACGGGTGAACTACTTAAAGAACTTTTGGGCCAACACGACAATAGAGGCAGGTAGGAAAAATGCAATGTTCGGGGCGGAGCCGCCGAAGCTCTACGCGATTCACTATCTAGGGCTAAAGCCATGGCATTGTTATAGGGACTACGACTGCAACTGGGATGTGGAGGATCAGAGAGTGTACGCGAGCGACGTGGCACATCGACGGTGGTGGAAGGTGCACGATGCTATGGACGAGAACTTGCAAAAGCTGTGTAGGTTAACGAGGCAACGAAGAATGGAGTTGAACTGGGAAAGGAGAAAGGCTGGGAAATTAGGGTTGCCAGATATGCATTGGAAGATCAATGTCACGGATCCCAGAAGAGCTGGCTCGATGTTGATTGGCTAG
>Glyma17g36100.1 sequence type=predicted peptide gene model=Glyma17g36100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDVWSLQKLVKTAPSKALVIRINLVCLAIFLVVYATFLLRPSSSVYFENAASLVRCSLRECHHKGEKSIKMKAVLERNEDRRAKQNASKIEVPSFFGEMGKGMKIGMVNMQEDDVSEWSTLGETSHVYFEKVSQFFNWTDLFPEWIDEEEETDVPSCPEIPMPEFTAYEGMDVIVAKLPCNYPKEGWGRNVFRLQVHLIVANLAVKKGKRDWNWKTKVVLWSKCRPMLELFRCNDLVKQENEWWYYEVDAMRLEQKVSLPVGSCNLALPLWEQGIDKVYDTWNLEQSVKSEARSKREAYATVLHSSEGYVCGAITLAQTLLQTGTKRDLILLLDTSISVAKRRSLELSGWKIRLITRIRNPRAENGTYNEYNYSKFRLWQLTDYERVIFIDADIIVLRNLDILFHFPQMSATGNDQSIFNSGIMVLEPSNCTFHVLMSRRHDVISYNGGDQGFLNEIFMWWHRLPRRVNYLKNFWANTTIEAGRKNAMFGAEPPKLYAIHYLGLKPWHCYRDYDCNWDVEDQRVYASDVAHRRWWKVHDAMDENLQKLCRLTRQRRMELNWERRKAGKLGLPDMHWKINVTDPRRAGSMLIG* >Glyma17g36100.2 sequence type=predicted peptide gene model=Glyma17g36100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKAVLERNEDRRAKQNASKIEVPSFFGEMGKGMKIGMVNMQEDDVSEWSTLGETSHVYFEKVSQFFNWTDLFPEWIDEEEETDVPSCPEIPMPEFTAYEGMDVIVAKLPCNYPKEGWGRNVFRLQVHLIVANLAVKKGKRDWNWKTKVVLWSKCRPMLELFRCNDLVKQENEWWYYEVDAMRLEQKVSLPVGSCNLALPLWEQGIDKVYDTWNLEQSVKSEARSKREAYATVLHSSEGYVCGAITLAQTLLQTGTKRDLILLLDTSISVAKRRSLELSGWKIRLITRIRNPRAENGTYNEYNYSKFRLWQLTDYERVIFIDADIIVLRNLDILFHFPQMSATGNDQSIFNSGIMVLEPSNCTFHVLMSRRHDVISYNGGDQGFLNEIFMWWHRLPRRVNYLKNFWANTTIEAGRKNAMFGAEPPKLYAIHYLGLKPWHCYRDYDCNWDVEDQRVYASDVAHRRWWKVHDAMDENLQKLCRLTRQRRMELNWERRKAGKLGLPDMHWKINVTDPRRAGSMLIG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
