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Report for Sequence Feature Glyma17g36041

Feature Type:gene_model
Chromosome:Gm17
Start:40027188
stop:40030785
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g36041
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G11210AT Annotation by Michelle Graham. TAIR10: glutamate receptor 2.5 | chr5:3571214-3574537 REVERSE LENGTH=829 SoyBaseE_val: 7.00E-52ISS
GO:0006810GO-bp Annotation by Michelle Graham. GO Biological Process: transport SoyBaseN/AISS
GO:0006865GO-bp Annotation by Michelle Graham. GO Biological Process: amino acid transport SoyBaseN/AISS
GO:0006874GO-bp Annotation by Michelle Graham. GO Biological Process: cellular calcium ion homeostasis SoyBaseN/AISS
GO:0007186GO-bp Annotation by Michelle Graham. GO Biological Process: G-protein coupled receptor signaling pathway SoyBaseN/AISS
GO:0009416GO-bp Annotation by Michelle Graham. GO Biological Process: response to light stimulus SoyBaseN/AISS
GO:0030003GO-bp Annotation by Michelle Graham. GO Biological Process: cellular cation homeostasis SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0016021GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane SoyBaseN/AISS
GO:0004930GO-mf Annotation by Michelle Graham. GO Molecular Function: G-protein coupled receptor activity SoyBaseN/AISS
GO:0004970GO-mf Annotation by Michelle Graham. GO Molecular Function: ionotropic glutamate receptor activity SoyBaseN/AISS
GO:0005215GO-mf Annotation by Michelle Graham. GO Molecular Function: transporter activity SoyBaseN/AISS
GO:0005217GO-mf Annotation by Michelle Graham. GO Molecular Function: intracellular ligand-gated ion channel activity SoyBaseN/AISS
GO:0005234GO-mf Annotation by Michelle Graham. GO Molecular Function: extracellular-glutamate-gated ion channel activity SoyBaseN/AISS
PTHR18966Panther IONOTROPIC GLUTAMATE RECEPTOR-RELATED JGI ISS
PTHR18966:SF6Panther gb def: agcp9714 [anopheles gambiae str. pest] JGI ISS
PF00060PFAM Ligand-gated ion channel JGI ISS
PF00497PFAM Bacterial extracellular solute-binding proteins, family 3 JGI ISS
PF01094PFAM Receptor family ligand binding region JGI ISS
UniRef100_B9MVR4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Glutamate-gated kainate-type ion channel receptor subunit GluR5 n=1 Tax=Populus trichocarpa RepID=B9MVR4_POPTR SoyBaseE_val: 1.00E-94ISS
UniRef100_I1MXN7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1MXN7_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma17g36041
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g36041 not represented in the dataset
Glyma17g36041 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g36041
ParalogEvidenceComments
Glyma14g09140 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g36041 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g241900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g36041
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma17g36041
>Glyma17g36041.1   sequence type=CDS   gene model=Glyma17g36041   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCACCCTTCACATGCACTTCATCCATCATACACGAATTCAATTGGAGAAAAGTCACAGCAATTTACGAACACAGCAACTTCTTTGCCTCTCATTCAGAAATATTAACAAGACTCTCATATTCTCTCAGTCTAGTTAATGCTGAAATAGACCACTATGTTGCTTTTCCTTCAATAATAATCACTCTTTCAAACCCAATAGAAAACTACATAGAACAAGAACTTGTAAGGCTCAAGAACAAGAGCAATAGGGTGTTCTTGCTTATTCAATCTTCCTTAGAGTTTTCCACATTGCTATTTGAGAAGGTAAGGCAAATGGGAATGATGGAAGAAGGGTCGGAGTGGATCATCACTGATGATGTAGCTACTCATCTTGATTCATTGGATTCTTCTATCATGTTTAACATGCAAGGTATTATGGGGTGCAAAACCACCTTCATGGAAACGAGTGAAACGTTCAAACGTTTCAAATTTGTGTTTGGGAGGAAGTTCGGATTGGAATACCCTGAAGAGGAAAACTCCCAGTTACCAAGTATCTTTGCTCTTAGGGCCTATGATGCTGTTTGGACCATTGCTCATGCATTGAAGAAATCACAAGGGAACTTTTTTTTCCTTATCAGGAAATATTTTACAGTGCTTTTAGGTTCTGTGGATTGGCCTGGTGGGTTGAAAACAGTTCCAAAAGGTTGGGCTTACAATAGCACTGAAGGAAGGCCTTTGAAAATTGGGGTTCCAGCAATTGATCCATGCCCTCAGTTTGTGAATGTGAGTCATGATAAGAGACTGAATGAAACCCAATTCACAGGTTTCTCTATCAATGTCTTTGAATCAGTTGTTAAGCGCCGGCCTTATCACCTGCCTTTTGTTTTTGTTCCATTCTATGGCTCTTATGATCAAATAGTTGAACAAGTGAACAATAAGGACCTTGATGCTGCTGTTGGAGATATTCAAGTGGTGGAACATAGATATGCATTTGCGGAATTCTCTCATCCGTATGTTGAATCTGGTATAGCCATGGTGGTGAAAGTAAAGGCAGATAGATCCAAAGAAACCTGGATGTTCATGGACGCTTTTACAAAAGAAATGTGGATGTTGATGGCAGTGATGCACCTGTTCATAGCATTTGTAATATGGTTCATTGAAGGTGAAAACAATTCAGAGTTGAAGAGTCTTGGGGCCATTCTCTGGTTTTCTGTCACCACATTATTCTTTGTACACAGAGAACCTGTGAAGAGCAACTTGGCTCGAGCTGTGCTAGCACCTTGGTTATTTGCTATTCTCATAGTGACTTCAAGTTTTACTGCGAGTCTTTCATCCATGATGACAGTGTCCCATCTTGAACCATCTGTGCCAGATATACAAACACTGCTGGGGACAAACGCAATCATAGGCTGCAACAAGAACACTTTTTTGGCATTCCCAAAAGGCTCAAGTTTAGCAATTGACATATCTCGAGCAACCCTAAAAGCCATAGAAAGTGGAGAAGGGCAAACCCATTGTGGATCAACAGGCAGCAAAATACAAAATGAACAACTAGGCTCTCAACCTTTCTTTGGCCTATTTGCCATTTGTGGAGCCATTGGTCTCTTTGGTTTGTTGGCAACCATTATTCATTTTGTTAACAGGAATGGACATACATTTATGAATTGCATATCATTATTACAGTTACAAAGAGGATTGTAG
Predicted protein sequences of Glyma17g36041
>Glyma17g36041.1   sequence type=predicted peptide   gene model=Glyma17g36041   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSPFTCTSSIIHEFNWRKVTAIYEHSNFFASHSEILTRLSYSLSLVNAEIDHYVAFPSIIITLSNPIENYIEQELVRLKNKSNRVFLLIQSSLEFSTLLFEKVRQMGMMEEGSEWIITDDVATHLDSLDSSIMFNMQGIMGCKTTFMETSETFKRFKFVFGRKFGLEYPEEENSQLPSIFALRAYDAVWTIAHALKKSQGNFFFLIRKYFTVLLGSVDWPGGLKTVPKGWAYNSTEGRPLKIGVPAIDPCPQFVNVSHDKRLNETQFTGFSINVFESVVKRRPYHLPFVFVPFYGSYDQIVEQVNNKDLDAAVGDIQVVEHRYAFAEFSHPYVESGIAMVVKVKADRSKETWMFMDAFTKEMWMLMAVMHLFIAFVIWFIEGENNSELKSLGAILWFSVTTLFFVHREPVKSNLARAVLAPWLFAILIVTSSFTASLSSMMTVSHLEPSVPDIQTLLGTNAIIGCNKNTFLAFPKGSSLAIDISRATLKAIESGEGQTHCGSTGSKIQNEQLGSQPFFGLFAICGAIGLFGLLATIIHFVNRNGHTFMNCISLLQLQRGL*






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