Glyma17g36030 - SoyBase

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Report for Sequence Feature Glyma17g36030

Feature Type:	gene_model
Chromosome:	Gm17
Start:	40019847
stop:	40023469
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g36030

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G42920	AT	Annotation by Michelle Graham. TAIR10: THO complex, subunit 5 \| chr5:17206310-17209522 REVERSE LENGTH=819	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG2216	KOG	Conserved coiled/coiled coil protein	JGI		ISS
PTHR13375	Panther	FMS INTERACTING PROTEIN	JGI		ISS
PF09766	PFAM	Fms-interacting protein	JGI		ISS
UniRef100_D5LMF8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cold-induce protein n=1 Tax=Ammopiptanthus nanus RepID=D5LMF8_9FABA	SoyBase	E_val: 0	ISS
UniRef100_UPI000233E68D	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E68D related cluster n=1 Tax=unknown RepID=UPI000233E68D	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g36030

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g36030

Paralog	Evidence	Comments
Glyma14g09150	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g36030 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g241800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g36030

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g36030

Limit To All Plant Sequences

>Glyma17g36030.1   sequence type=CDS   gene model=Glyma17g36030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGACGGCGATACGACGGAGGAGGCGGTTGTCGTTCCGGTCTCAAACGGCGACGAGCAATCGTTTTCTCATTCTTCCTCACGGCAACGCGATTCGGAGGAGGAATCTCCGCACGAAACGTTGCGTAACACAAAAGCTTCAATAGAGAACATCGTAGCCGAGATTCTCTCTCTGAAGAACCAGGCAAAACCCAAACCACTCCTCACTCTCCGACTCCGAGAGCTCCTCACTCAAACGTTCCTCCACTTCGTCACTCTCCGCCAGGCAAATCGCTCGATCTTGCTGGAGGAGGAGCGCGCAAGAACGGAAACGGAGCGTGCGAAGGTGCCTCTGGAACTCACCACACAGAAGCTTCAGAACCTGAGTTATGAGAAGAGTCAATTCGTGAAAGCGATAAAGGTGTGTAACGATTTCAAGTCGAAGTATCCTGATATTGAAGTGGTGTCGGAGGAAGAGTTTTTTCGCGGCGCGCCGCAGGATATGAAGGATTCCGTTTTGTCCAATCACAGTGAGCATAATCTCGTGCTTAAGAGGCTCAATTTCGAGCTCTTTCAGCGCAAAGAGCTTTGCAAACTTCATGACAAACTGGAACAGAAAAGGAAAACCCTTCTGGATACAATTGCAAACCGAAAGAAGTTCTTATCTAGCCTCCCTTCACATCTCAAGTCTCTTAAGAAAGCATCGTTGCCGGTGCAAAATCAACTAGGAGTTCAGCATACTAAGAAACTAAAGCGGCATCATACAGCAGAGTTGCTTCCACCACCTCTTTATGTGATTTACTCACAGTTGTTGGCTCAAAAGGAGGCGTTTGGAGAATCTATTGATGTGGAGATTATAGGAAGTGTCAAAGATGCTCAAGCTTTTTCCCACCATCTAGCTCACAAGGACACTGGCATTTCCACCACTGTGGAGAGTCCTAAATTGGAAAACAATGAACCTGATGAAGATGGTCAGAGACAGAGTAAAAGGCCAAGGAGGTTTCAAGGCAAGGAGAGCCTTGACCAGGCAGGAATATTTCAAATTCACCCACTTACTGTCAATCTCCATGTGTATGATGATGAGGTTACTGATCTTGAGTCTGCAAAACTCATTTCTCTAAAGTTTGAGTACTTGATGCAGTTGAATATTATATGTGTTGGAAACGAAGCATCTAATAGTGGTTCTGAGAATGACATCTTAAGCGATTTATTCCCAGATGACACCGGTCTCGAGCTTCCTCACCAGTCAGCTAAGCTCTGTGTCGGGAATGCTATAATGTTCAATGGTGATAGAACTGCACGTCCTTACAAATGGGCACAGCACCTGGCGGGTATTGATTTCTTGCCTGAGGTGGCTCCCTTGCTGCTTGCTAGCCGTGAAACTTCAGACAGTGGTGAAGCTGCCAAAGGTGAAGACTTCATAACTAGTCTTTCACAATATCGCCAACAAAACCGATTACAGACAGTTCTGCAAAAAATTCGATCAAGGATAAAAGCTCAGTTGGCTCTTCAATAA

Predicted protein sequences of Glyma17g36030

Limit To All Plant Sequences

>Glyma17g36030.1   sequence type=predicted peptide   gene model=Glyma17g36030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEDGDTTEEAVVVPVSNGDEQSFSHSSSRQRDSEEESPHETLRNTKASIENIVAEILSLKNQAKPKPLLTLRLRELLTQTFLHFVTLRQANRSILLEEERARTETERAKVPLELTTQKLQNLSYEKSQFVKAIKVCNDFKSKYPDIEVVSEEEFFRGAPQDMKDSVLSNHSEHNLVLKRLNFELFQRKELCKLHDKLEQKRKTLLDTIANRKKFLSSLPSHLKSLKKASLPVQNQLGVQHTKKLKRHHTAELLPPPLYVIYSQLLAQKEAFGESIDVEIIGSVKDAQAFSHHLAHKDTGISTTVESPKLENNEPDEDGQRQSKRPRRFQGKESLDQAGIFQIHPLTVNLHVYDDEVTDLESAKLISLKFEYLMQLNIICVGNEASNSGSENDILSDLFPDDTGLELPHQSAKLCVGNAIMFNGDRTARPYKWAQHLAGIDFLPEVAPLLLASRETSDSGEAAKGEDFITSLSQYRQQNRLQTVLQKIRSRIKAQLALQ*

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