Glyma17g35930 - SoyBase

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Report for Sequence Feature Glyma17g35930

Feature Type:	gene_model
Chromosome:	Gm17
Start:	39893214
stop:	39896546
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g35930

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G32510	AT	Annotation by Michelle Graham. TAIR10: NAC domain containing protein 11 \| chr1:11757000-11758118 FORWARD LENGTH=283	SoyBase	E_val: 6.00E-25	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PF02365	PFAM	No apical meristem (NAM) protein	JGI		ISS
UniRef100_B9MVT6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: NAC domain protein, IPR003441 n=1 Tax=Populus trichocarpa RepID=B9MVT6_POPTR	SoyBase	E_val: 8.00E-63	ISS
UniRef100_I1MXM8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MXM8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g35930

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g35930

Paralog	Evidence	Comments
Glyma14g09240	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g35930 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g240700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g35930

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g35930

Limit To All Plant Sequences

>Glyma17g35930.2   sequence type=transcript   gene model=Glyma17g35930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAAAACCACACTCACTCTCCTCCTCTCGCCTCTTTCCTTCTTTCTTTCTCCCATTCTCCTAAATTCCTCCAAAAACCCTAACACTCTCTCATTCTCAGTTTTTCTCAATCTTATGATTAATGGAAGACCACGCGCATGCTGCACTACCTCCCGGTTACCGGTTCTACCCTTCCGAAGAGGTTCTCGTCGGTTACTACTTAACCAAGAAGAACGAGAACCGGGAGGAGGGTTTCTACGGTTCTGATTTGATCAGAGAACTTGACCTCTACGATCACGATCCCTTCGAATTACCGGACGCTGCTGCTTGCTTTTCGTACGGTTACAAAGGGAGGAAGAAGCATTGGTTCTGTTACGCTAAAGAGACCAAACGCAGAAACAGAAGAAAGGTGAAAAGCGGGTTCTGGCTCCGGAAGGGAAAGGTTCGGGATATTTCCGACCACAACGGCGACGACGTCGTTTTGGGCACGAGGACGCGTTTCGTTTTCTACGTCGGCAATTCCCTGAAAAACGCTGCCAGAACCGATTGGATTTTGTACGAATACGCATTGGTTGATCGCTTTCTGGCTTCGTTTGTGCTTTGTCGTGTGGTGAATAAGCCTCCTCATAAGAATAGTCCGTCGGAGATCGGTCTGAGTTGTTGTGCTGAGGAGAGTGTTGTGGCGGTGGTGCGTCACGTTGGTGTTCAGTGTGATGGATGTGCCGAAAGTGATGTTGTTGAAGCTAAGGTGTGTGATGAAGGCTTTGTTAATAGAGAGAATGAGATTGCTGAGAATCCAATTAGTGGTGAACATGGTGATCCAGCTGCACCTGTTTCAGTTGCTCAGGGAAGTCAGCCGTTGTCAATTGCAAACTTCTGCATCAGCAATTGCCTGAAAAATTTATTCAGAATTAGGGTCATCAATACAGGGAATCAGTCAAAATGTTTGTTGTTCAGGAAAGGCTTTCTAAACTTCCCAGTGGCAGTGCATTGTTCGTAGGAGCTATGACATCTCAGCAACTTATGCTTTCCATTCTAGAGGAGGATTTCATAGAATTGGATGATATTGCATGAATTGATTGGTTTTAAGAGATTTTGTGAATTCTAATACTGCTCTGAGGAGTAATTATCACCTGAAACAATTGTATTCAGAATGGATTATTGACCCAGCTAAAGGGGAGAAAGATTTATGATAATGAGTAGCTATTATTCCACTCAAACGAAGAAACATACTGTCGAATGGGGTTGAGGCAAATGTCATGAAATGATCACTTCGCATGTTAAGGTAGTTACTATAGATCTTTGTATGTTACTCTCTTGAGCTACTTGAGAAAATATTCAGCAGTTCTTCTTTGTTTTGGGAATGCAGATTTTCTCCTGTGCCTACTGCAGGGCAATTGGCTCCAGAGGGATAGAGTTAGAGTTAGATATTGGTATTGGTAATTGGAATATGCGATTTACTCTAGTATGCTATGAGCAACTTCACCGTACTTCATGCTTTCATTGTTCCCTTGATCGACCTGTTCCTATTTAAATTTAATTAGCATTCCTGGGATCATCAGAATTTCCTATCTGCACCTTAGTAGCAAGACCTATTTGTTACTGTCTGTGCTACTTTCTTTTTCCTATATTGTTCAAGAGGAGAATCAGATGAATTCCAAATTGTAAGTGTTACAACATAATGATAGTTTATGAATTGACTTAACCTTTATACTTTTGAGGTTATGCTGACT

>Glyma17g35930.3   sequence type=transcript   gene model=Glyma17g35930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCCGCTACTCATCACCCAATGATTCCATCACCCCGCGCTCCACCGTGGCCAACACAATGGCGTCGTCACAGCCAATTAAAACGCGCCATGTCCCCACACTCACAGTCACCGGCGGGAGAGTGAACAAAGCTTGCAAAACACGATTCTCTGATTTCATTTTTTCTCACTACAAAACCACACTCACTCTCCTCCTCTCGCCTCTTTCCTTCTTTCTTTCTCCCATTCTCCTAAATTCCTCCAAAAACCCTAACACTCTCTCATTCTCAGTTTTTCTCAATCTTATGATTAATGGAAGACCACGCGCATGCTGCACTACCTCCCGGTTACCGGTTCTACCCTTCCGAAGAGGTTCTCGTCGGTTACTACTTAACCAAGAAGAACGAGAACCGGGAGGAGGGTTTCTACGGTTCTGATTTGATCAGAGAACTTGACCTCTACGATCACGATCCCTTCGAATTACCGGACGCTGCTGCTTGCTTTTCGTACGGTTACAAAGGGAGGAAGAAGCATTGGTTCTGTTACGCTAAAGAGACCAAACGCAGAAACAGAAGAAAGGTGAAAAGCGGGTTCTGGCTCCGGAAGGGAAAGGTTCGGGATATTTCCGACCACAACGGCGACGACGTCGTTTTGGGCACGAGGACGCGTTTCGTTTTCTACGTCGGCAATTCCCTGAAAAACGCTGCCAGAACCGATTGGATTTTGTACGAATACGCATTGGTTGATCGCTTTCTGGCTTCGTTTGTGCTTTGTCGTGTGGTGAATAAGCCTCCTCATAAGAATAGTCCGTCGGAGATCGGTCTGAGTTGTTGTGCTGAGGAGAGTGTTGTGGCGGTGGTGCGTCACGTTGGTGTTCAGTGTGATGGATGTGCCGAAAGTGATGTTGTTGAAGCTAAGGTGTGTGATGAAGGCTTTGTTAATAGAGAGAATGAGATTGCTGAGAATCCAATTAGTGGTGAACATGGTGATCCAGCTGCACCTGTTTCAGTTGCTCAGGGAAGTCAGCCGGTTCAGGAAAGGCTTTCTAAACTTCCCAGTGGCAGTGCATTGTTCGTAGGAGCTATGACATCTCAGCAACTTATGCTTTCCATTCTAGAGGAGGATTTCATAGAATTGGATGATATTGCATGAATTGATTGGTTTTAAGAGATTTTGTGAATTCTAATACTGCTCTGAGGAGTAATTATCACCTGAAACAATTGTATTCAGAATGGATTATTGACCCAGCTAAAGGGGAGAAAGATTTATGATAATGAGTAGCTATTATTCCACTCAAACGAAGAAACATACTGTCGAATGGGGTTGAGGCAAATGTCATGAAATGATCACTTCGCATGTTAAGATTTTCTCCTGTGCCTACTGCAGGGCAATTGGCTCCAGAGGGATAGAGTTAGAGTTAGATATTGGTATTGGTAATTGGAATATGCGATTTACTCTAGTATGCTATGAGCAACTTCACCGTACTTCATGCTTTCATTGTTCCCTTGATCGACCTGTTCCTATTTAAATTTAATTAGCATTCCTGGGATCATCAGAATTTCCTATCTGCACCTTAGTAGCAAGACCTATTTGTTACTGTCTGTGCTACTTTCTTTTTCCTATATTGTTCAAGAGGAGAATCAGATGAATTCCAAATTGTAAGTGTTACAACATAATGATAGTTTATGAATTGACTTAACCTTTATACTTTTGAGGTTATGCTGACTAATTTTATGTTCTTCATGGTATTTTTGTTTGGATA

Coding sequences of Glyma17g35930

Limit To All Plant Sequences

>Glyma17g35930.1   sequence type=CDS   gene model=Glyma17g35930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGACCACGCGCATGCTGCACTACCTCCCGGTTACCGGTTCTACCCTTCCGAAGAGGTTCTCGTCGGTTACTACTTAACCAAGAAGAACGAGAACCGGGAGGAGGGTTTCTACGGTTCTGATTTGATCAGAGAACTTGACCTCTACGATCACGATCCCTTCGAATTACCGGACGCTGCTGCTTGCTTTTCGTACGGTTACAAAGGGAGGAAGAAGCATTGGTTCTGTTACGCTAAAGAGACCAAACGCAGAAACAGAAGAAAGGTGAAAAGCGGGTTCTGGCTCCGGAAGGGAAAGGTTCGGGATATTTCCGACCACAACGGCGACGACGTCGTTTTGGGCACGAGGACGCGTTTCGTTTTCTACGTCGGCAATTCCCTGAAAAACGCTGCCAGAACCGATTGGATTTTGTACGAATACGCATTGGTTGATCGCTTTCTGGCTTCGTTTGTGCTTTGTCGTGTGGTGAATAAGCCTCCTCATAAGAATAGTCCGTCGGAGATCGGTCTGAGTTGTTGTGCTGAGGAGAGTGTTGTGGCGGTGGTGCGTCACGTTGGTGTTCAGTGTGATGGATGTGCCGAAAGTGATGTTGTTGAAGCTAAGGTGTGTGATGAAGGCTTTGTTAATAGAGAGAATGAGATTGCTGAGAATCCAATTAGTGGTGAACATGGTGATCCAGCTGCACCTGTTTCAGTTGCTCAGGGAAGTCAGCCGTTGTCAATTGCAAACTTCTGCATCAGCAATTGCCTGAAAAATTTATTCAGAATTAGGGTCATCAATACAGGGAATCAGTCAAAATGTTTGTTGCAAGTACTTTTTTCTTTTAAATTTGGAAAGTTTTGA

>Glyma17g35930.2   sequence type=CDS   gene model=Glyma17g35930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGACCACGCGCATGCTGCACTACCTCCCGGTTACCGGTTCTACCCTTCCGAAGAGGTTCTCGTCGGTTACTACTTAACCAAGAAGAACGAGAACCGGGAGGAGGGTTTCTACGGTTCTGATTTGATCAGAGAACTTGACCTCTACGATCACGATCCCTTCGAATTACCGGACGCTGCTGCTTGCTTTTCGTACGGTTACAAAGGGAGGAAGAAGCATTGGTTCTGTTACGCTAAAGAGACCAAACGCAGAAACAGAAGAAAGGTGAAAAGCGGGTTCTGGCTCCGGAAGGGAAAGGTTCGGGATATTTCCGACCACAACGGCGACGACGTCGTTTTGGGCACGAGGACGCGTTTCGTTTTCTACGTCGGCAATTCCCTGAAAAACGCTGCCAGAACCGATTGGATTTTGTACGAATACGCATTGGTTGATCGCTTTCTGGCTTCGTTTGTGCTTTGTCGTGTGGTGAATAAGCCTCCTCATAAGAATAGTCCGTCGGAGATCGGTCTGAGTTGTTGTGCTGAGGAGAGTGTTGTGGCGGTGGTGCGTCACGTTGGTGTTCAGTGTGATGGATGTGCCGAAAGTGATGTTGTTGAAGCTAAGGTGTGTGATGAAGGCTTTGTTAATAGAGAGAATGAGATTGCTGAGAATCCAATTAGTGGTGAACATGGTGATCCAGCTGCACCTGTTTCAGTTGCTCAGGGAAGTCAGCCGTTGTCAATTGCAAACTTCTGCATCAGCAATTGCCTGAAAAATTTATTCAGAATTAGGGTCATCAATACAGGGAATCAGTCAAAATGTTTGTTGTTCAGGAAAGGCTTTCTAAACTTCCCAGTGGCAGTGCATTGTTCGTAG

>Glyma17g35930.3   sequence type=CDS   gene model=Glyma17g35930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGACCACGCGCATGCTGCACTACCTCCCGGTTACCGGTTCTACCCTTCCGAAGAGGTTCTCGTCGGTTACTACTTAACCAAGAAGAACGAGAACCGGGAGGAGGGTTTCTACGGTTCTGATTTGATCAGAGAACTTGACCTCTACGATCACGATCCCTTCGAATTACCGGACGCTGCTGCTTGCTTTTCGTACGGTTACAAAGGGAGGAAGAAGCATTGGTTCTGTTACGCTAAAGAGACCAAACGCAGAAACAGAAGAAAGGTGAAAAGCGGGTTCTGGCTCCGGAAGGGAAAGGTTCGGGATATTTCCGACCACAACGGCGACGACGTCGTTTTGGGCACGAGGACGCGTTTCGTTTTCTACGTCGGCAATTCCCTGAAAAACGCTGCCAGAACCGATTGGATTTTGTACGAATACGCATTGGTTGATCGCTTTCTGGCTTCGTTTGTGCTTTGTCGTGTGGTGAATAAGCCTCCTCATAAGAATAGTCCGTCGGAGATCGGTCTGAGTTGTTGTGCTGAGGAGAGTGTTGTGGCGGTGGTGCGTCACGTTGGTGTTCAGTGTGATGGATGTGCCGAAAGTGATGTTGTTGAAGCTAAGGTGTGTGATGAAGGCTTTGTTAATAGAGAGAATGAGATTGCTGAGAATCCAATTAGTGGTGAACATGGTGATCCAGCTGCACCTGTTTCAGTTGCTCAGGGAAGTCAGCCGGTTCAGGAAAGGCTTTCTAAACTTCCCAGTGGCAGTGCATTGTTCGTAGGAGCTATGACATCTCAGCAACTTATGCTTTCCATTCTAGAGGAGGATTTCATAGAATTGGATGATATTGCATGA

Predicted protein sequences of Glyma17g35930

Limit To All Plant Sequences

>Glyma17g35930.1   sequence type=predicted peptide   gene model=Glyma17g35930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEDHAHAALPPGYRFYPSEEVLVGYYLTKKNENREEGFYGSDLIRELDLYDHDPFELPDAAACFSYGYKGRKKHWFCYAKETKRRNRRKVKSGFWLRKGKVRDISDHNGDDVVLGTRTRFVFYVGNSLKNAARTDWILYEYALVDRFLASFVLCRVVNKPPHKNSPSEIGLSCCAEESVVAVVRHVGVQCDGCAESDVVEAKVCDEGFVNRENEIAENPISGEHGDPAAPVSVAQGSQPLSIANFCISNCLKNLFRIRVINTGNQSKCLLQVLFSFKFGKF*

>Glyma17g35930.2   sequence type=predicted peptide   gene model=Glyma17g35930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEDHAHAALPPGYRFYPSEEVLVGYYLTKKNENREEGFYGSDLIRELDLYDHDPFELPDAAACFSYGYKGRKKHWFCYAKETKRRNRRKVKSGFWLRKGKVRDISDHNGDDVVLGTRTRFVFYVGNSLKNAARTDWILYEYALVDRFLASFVLCRVVNKPPHKNSPSEIGLSCCAEESVVAVVRHVGVQCDGCAESDVVEAKVCDEGFVNRENEIAENPISGEHGDPAAPVSVAQGSQPLSIANFCISNCLKNLFRIRVINTGNQSKCLLFRKGFLNFPVAVHCS*

>Glyma17g35930.3   sequence type=predicted peptide   gene model=Glyma17g35930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEDHAHAALPPGYRFYPSEEVLVGYYLTKKNENREEGFYGSDLIRELDLYDHDPFELPDAAACFSYGYKGRKKHWFCYAKETKRRNRRKVKSGFWLRKGKVRDISDHNGDDVVLGTRTRFVFYVGNSLKNAARTDWILYEYALVDRFLASFVLCRVVNKPPHKNSPSEIGLSCCAEESVVAVVRHVGVQCDGCAESDVVEAKVCDEGFVNRENEIAENPISGEHGDPAAPVSVAQGSQPVQERLSKLPSGSALFVGAMTSQQLMLSILEEDFIELDDIA*

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