Report for Sequence Feature Glyma17g35890
Feature Type: gene_model
Chromosome: Gm17
Start: 39873350
stop: 39878718
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma17g35890
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G34110 AT
Annotation by Michelle Graham. TAIR10: poly(A) binding protein 2 | chr4:16336732-16339892 FORWARD LENGTH=629
SoyBase E_val: 0 ISS
GO:0006413 GO-bp
Annotation by Michelle Graham. GO Biological Process: translational initiation
SoyBase N/A ISS
GO:0006486 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein glycosylation
SoyBase N/A ISS
GO:0009651 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to salt stress
SoyBase N/A ISS
GO:0005829 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytosol
SoyBase N/A ISS
GO:0003723 GO-mf
Annotation by Michelle Graham. GO Molecular Function: RNA binding
SoyBase N/A ISS
GO:0003743 GO-mf
Annotation by Michelle Graham. GO Molecular Function: translation initiation factor activity
SoyBase N/A ISS
GO:0005515 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein binding
SoyBase N/A ISS
KOG0123
KOG
Polyadenylate-binding protein (RRM superfamily)
JGI ISS
PTHR24011 Panther
FAMILY NOT NAMED
JGI ISS
PTHR24011:SF69 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF00076 PFAM
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
JGI ISS
PF00658 PFAM
Poly-adenylate binding protein, unique domain
JGI ISS
UniRef100_G7I2E2 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Polyadenylate-binding protein n=1 Tax=Medicago truncatula RepID=G7I2E2_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1MXM6 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MXM6_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma17g35890
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma17g35890
Paralog Evidence Comments
Glyma14g09300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma17g35890 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.17g240400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma17g35890
Coding sequences of Glyma17g35890
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma17g35890.1 sequence type=CDS gene model=Glyma17g35890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCGGAGATTCAGGTGCAGCATCAGAGTCCGGTGTCGGCGGCTCCTCCTCCAAACGGCGGCGTGGCGAACGCCCCGAACAACGCGAACCAGTTCGTGACGACGTCGTTGTACGTTGGCGATCTAGACCAGAATGTCAACGACTCGCAGCTCTACGATCTGTTCAACCAGGTCGGCCAAGTCGTTTCGGTGCGCGTCTGCAGGGACCTTACTACGCGTCGTTCACTCGGTTACGGCTACGTTAATTTCAGTAACCCTCAGGATGCGGCGAGGGCATTGGATGTGCTGAATTTCACTCCACTTAACAACAGATCTATTAGGATCATGTATTCTCATCGAGATCCTAGTCTTAGGAAGAGTGGTACTGCGAATATTTTTATCAAGAATTTGGATAAGGCTATTGACCACAAGGCCTTACATGATACTTTTTCTTCTTTTGGACTCATTCTTTCTTGCAAAATAGCAACTGATGCTTCTGGTCTGTCTAAGGGCTATGGTTTTGTTCAATTTGACAATGAAGAGGCTGCACAGAATGCTATTGACAAGTTAAATGGCATGCTGATCAATGATAAGCAGGTCTATGTAGGCCATTTCCTGCGAAAGCAAGATAGAGAGAATGCTCTCAGCAAGACAAAATTTAATAATGTCTATGTGAAAAACTTATCAGAGTCAACCACGGATGAAGAGTTGATGATAAATTTTGGAGAATATGGTACCATTACTAGTGCTTTAATAATGAGAGATGCTGATGGTAAATCAAGGTGTTTTGGCTTTGTCAATTTTGAAAACCCAGACGATGCTGCCAAAGCTGTTGAGGGACTTAATGGGAAGAAATTTGATGATAAGGAATGGTATGTTGGAAAAGCCCAGAAAAAATCTGAGCGTGAACAAGAACTGAAAGGACGATTTGAGCAGAGCATAAAGGAAGCTGCTGACAAATATCCAGGTTTGAACTTGTATCTCAAGAACTTGGATGATACAATCAGTGATGAAAAACTTAAGGAAATGTTTGCCGACTATGGTACAATAACTTCTTGCAAGGTTATGCGAGACCCGACTGGAATCAGCAGAGGATCAGGATTTGTTGCATTTTCAACTCCTGAGGAAGCAACTCGAGCTCTTGGTGAGATGAATGGTAAAATGTTTGCTGGAAAACCTCTGTATGTTGCCCTTGCACAGAGAAAAGAAGAGAGAAGAGCAAGGTTACAGGCACAATTTTCACAGATGAGGCCTGTTGCAATAACGCCTTCTGTTGCGCCCCGTATGCCTCTCTACCCTCCTGGTGCTCCTGGTCTTGGACAACAATTTTTGTATGGGCAAGGACCCCCAGCCATGATGCCTCCACAAGCTGGATTTGGTTACCAGCAGCAACTAGTTCCGGGAATGAGACCTGGTGGTGGTCCCATGCCAAGCTTCTTTGTTCCCATGGTTCAGCAGGGCCAACAAGGGCAGCGCCCAGTGGGCCGCCGAGGAACAGGTCCTGTGCAACAACCCCAGCAGCCAATGCCAATGATGCAGCAGCAGATGCTTCCAAGGGGACGTGTCTATCGTTACCCTCCTGGCCGCAACATGCAAGATGTCCCACTTCAAGTTGCAGCTGGTGGAATGCTGTCGGTCCCTTATGACATGGGAGGTCTGCCAATGCGCGATGCTGTGGGACAGCCAATGCCCATTCAAGCTTTGGCTACAGCCCTCGCAAATGCTCCACCAGAACAGCAGAGGACTATGCTCGGTGAAGCTTTATACCCACTTGTGGATCAGCTGGAACATGATTCTGCTGCAAAGGTTACAGGCATGCTTCTGGAGATGGACCAGCCTGAAGTTTTACATCTGATTGAGTCACCAGATGCTCTGAAGGCAAAAGTTGCTGAAGCCATGGATGTGTTGAGAAATGTTGCTCAACAGCAAACCAACCCAGCTGATCAACTAGCCTCACTCTCTCTCAATGACAATCTTGTGTCTTAG
Predicted protein sequences of Glyma17g35890
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma17g35890.1 sequence type=predicted peptide gene model=Glyma17g35890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAEIQVQHQSPVSAAPPPNGGVANAPNNANQFVTTSLYVGDLDQNVNDSQLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNFSNPQDAARALDVLNFTPLNNRSIRIMYSHRDPSLRKSGTANIFIKNLDKAIDHKALHDTFSSFGLILSCKIATDASGLSKGYGFVQFDNEEAAQNAIDKLNGMLINDKQVYVGHFLRKQDRENALSKTKFNNVYVKNLSESTTDEELMINFGEYGTITSALIMRDADGKSRCFGFVNFENPDDAAKAVEGLNGKKFDDKEWYVGKAQKKSEREQELKGRFEQSIKEAADKYPGLNLYLKNLDDTISDEKLKEMFADYGTITSCKVMRDPTGISRGSGFVAFSTPEEATRALGEMNGKMFAGKPLYVALAQRKEERRARLQAQFSQMRPVAITPSVAPRMPLYPPGAPGLGQQFLYGQGPPAMMPPQAGFGYQQQLVPGMRPGGGPMPSFFVPMVQQGQQGQRPVGRRGTGPVQQPQQPMPMMQQQMLPRGRVYRYPPGRNMQDVPLQVAAGGMLSVPYDMGGLPMRDAVGQPMPIQALATALANAPPEQQRTMLGEALYPLVDQLEHDSAAKVTGMLLEMDQPEVLHLIESPDALKAKVAEAMDVLRNVAQQQTNPADQLASLSLNDNLVS*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
