Glyma17g35850 - SoyBase

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Report for Sequence Feature Glyma17g35850

Feature Type:	gene_model
Chromosome:	Gm17
Start:	39823831
stop:	39829239
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g35850

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G32230	AT	Annotation by Michelle Graham. TAIR10: proteinaceous RNase P 1 \| chr2:13679608-13681756 REVERSE LENGTH=572	SoyBase	E_val: 0	ISS
GO:0006855	GO-bp	Annotation by Michelle Graham. GO Biological Process: drug transmembrane transport	SoyBase	N/A	ISS
GO:0008033	GO-bp	Annotation by Michelle Graham. GO Biological Process: tRNA processing	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0004526	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ribonuclease P activity	SoyBase	N/A	ISS
GO:0015238	GO-mf	Annotation by Michelle Graham. GO Molecular Function: drug transmembrane transporter activity	SoyBase	N/A	ISS
GO:0015297	GO-mf	Annotation by Michelle Graham. GO Molecular Function: antiporter activity	SoyBase	N/A	ISS
KOG1347	KOG	Uncharacterized membrane protein, predicted efflux pump	JGI		ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PF11977	PFAM	Zc3h12a-like Ribonuclease domain	JGI		ISS
UniRef100_G7IUM8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7IUM8_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MXM3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MXM3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g35850

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g35850

Paralog	Evidence	Comments
Glyma14g09330	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g35850 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g240000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g35850

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g35850

Limit To All Plant Sequences

>Glyma17g35850.2   sequence type=CDS   gene model=Glyma17g35850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGCGAGACTCGCTCCCCCTTTCAGTATCTTCACACAATCCCATTACTGGCGCCCACTTCTCTCTTCTCACAACGCCAAACACGCCCTAACTGCCGCTACTAACTTCTCCATCACCTCATTAGCTCGAACGCCCAAATCACGAGATGAAGGAACAACCACCACCATTAAGCTTTCGAGCAAATCCAGAAGAAAAGCCTTCTATGAGTCCCCAGAAGGAGTCTTGTTGCGCAAGCTAAACGAGTGCTCAAAGGACGGAGATGTCATTCAAGCGCTTCGCCACTACGACGAGGCTCGAAAATTGGGGGTTCTACTCAGCCTTGATCACTACAACAAGTTGCTCTACCTGTGTTCTGTTGAAAGTGCTGCTGGTGTTCCCCATTTGGGTCTCAAAAGGGGGTTTGAGATTTTTCAGCAGATGTTGAATGACCGAGTTCAGCCCAATGAAGCCACTTTTACCAATGCTGCTAGGCTTGCTGCTGCCAAGGAAGATCCTGACATGGCTTTCGAATTGCTGAAGCAGATGAAGAATGTCGCGATTGCTCCGAAGCTGAGATCGTATGAGCCAGCTTTGTTTGGATTTTGCAAGAGGGGTGATGCCGAGAAGGCTTATCTAGTTGATGCTGACATGGTTGAGTCTGGGATTGTGGCGGAAGAGCCCGAGCTTTCTGCTCTTTTGGAAGTCAGTGTCAATGCCAATAAGGAAGACAAGGTGTATGAGGTTTTGCATCGGTTGCGTGCTACGTTGAGGCAGGTGTCTGAATCAACTTTGGGGATAGTTGAGAACTGGTTTAACTCAGAGTATGCTGCGAAAATTGGGAAGGAGAAGTGGGATGTTAAGAAGGTGAGGGAAGGGATTGCGCGGGGAGGTGGAGGATGGCATGGACAAGGGTGGCTTGGGAGTGGGCGGTGGAAGGTGGTGAATACTCAGGTGAACGAGGATGGCGTGTGTCTCTCGTGTGGGGAGAAGCTTGCGAGCATTGATATTGATCCAAAAGAGACTGAAAATTTTGCTGCCTCATTGTCTAAATTAGCTTGTCAAAAAGAAGCTAAGGCAAACTTTGTTCATTTTCAGACATGGCTTGAGCGGCATGGTCCGTTTGATGCTGTTGTAGATGGTGCCAATGTAGGCCTTGCCAATGGGCATAATTTCAGCTTTTCACAGCTTAACACTGTTGTTGAACAATTACGTCAAATAAGCCCTTCAAAGAGATTGCCTCTTATAATTTTGCATATAAGTCGGGTACATGGTGGTCCTGCTCAGAATCCAAAAAACAAGAGACTTATAGAAAATTGGAAAAAAAATGGCGTTCTTTATGCTACACCTCAAGGTTCAAATGATGACTGGTATTGGTTATATGCTGCTGTTAGTTGTAAATGCTTACTGCTAACAAATGACGAGATGAGGGACCACTTGTTCCAACTATTGGGTTCTAATTTTTTCCCGAGATGGAAGGAAAAACATCAGGTTCGAACATCAGCCTCAACTTGTGGACGCTCCCTAATTATGCCTCCCCGTTATTCAATAGTTATTCAGGAATCAGCCAGTGGTTGTTGGCATGTGCCAACTGTAACTACTGATGATCATGAGATCCCAAGGAAATGGTTGTGTGCCACAAGATCCAGAAAAGATTCATTACATAATCTATGA

Predicted protein sequences of Glyma17g35850

Limit To All Plant Sequences

>Glyma17g35850.2   sequence type=predicted peptide   gene model=Glyma17g35850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMARLAPPFSIFTQSHYWRPLLSSHNAKHALTAATNFSITSLARTPKSRDEGTTTTIKLSSKSRRKAFYESPEGVLLRKLNECSKDGDVIQALRHYDEARKLGVLLSLDHYNKLLYLCSVESAAGVPHLGLKRGFEIFQQMLNDRVQPNEATFTNAARLAAAKEDPDMAFELLKQMKNVAIAPKLRSYEPALFGFCKRGDAEKAYLVDADMVESGIVAEEPELSALLEVSVNANKEDKVYEVLHRLRATLRQVSESTLGIVENWFNSEYAAKIGKEKWDVKKVREGIARGGGGWHGQGWLGSGRWKVVNTQVNEDGVCLSCGEKLASIDIDPKETENFAASLSKLACQKEAKANFVHFQTWLERHGPFDAVVDGANVGLANGHNFSFSQLNTVVEQLRQISPSKRLPLIILHISRVHGGPAQNPKNKRLIENWKKNGVLYATPQGSNDDWYWLYAAVSCKCLLLTNDEMRDHLFQLLGSNFFPRWKEKHQVRTSASTCGRSLIMPPRYSIVIQESASGCWHVPTVTTDDHEIPRKWLCATRSRKDSLHNL*

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