Glyma17g35830 - SoyBase

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Report for Sequence Feature Glyma17g35830

Feature Type:	gene_model
Chromosome:	Gm17
Start:	39821492
stop:	39822658
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g35830

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G52010	AT	Annotation by Michelle Graham. TAIR10: C2H2-like zinc finger protein \| chr5:21121626-21122816 REVERSE LENGTH=396	SoyBase	E_val: 3.00E-154	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
UniRef100_Q9FJ91	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT5g52010/MSG15_9 n=2 Tax=Arabidopsis thaliana RepID=Q9FJ91_ARATH	SoyBase	E_val: 1.00E-151	ISS
UniRef100_UPI000233E659	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E659 related cluster n=1 Tax=unknown RepID=UPI000233E659	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g35830

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g35830

Paralog	Evidence	Comments
Glyma14g09340	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g35830 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g239900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g35830

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g35830

Limit To All Plant Sequences

>Glyma17g35830.2   sequence type=CDS   gene model=Glyma17g35830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTGGTGCGAATGAGAAAAACATGAAGAATTCTCTGTTTCTCCTCCACAATGCAAACACAATCCACTTCAATCTTCATTCCCAGATTACCCTTCCTTCCATTCCCCTCACAACAATTACAACTACCAAACCCTTCCCTCACAACCGTCACTTCCCACGCATCCAATGCTGCAGCAACAACAACAACAACAACAGCATCGAAATCGACATGGTGAAGAACAGCCAAGGAATCTACGCCCCCAAAGCCTCCAAGGTGGTCGTCCTCTGGGACCTCGACAACAAACCCCCCCGCGGCCCACCCTACGACGTCGCCATCTCCCTCAAAACCCTCGCCGCCCGCTTCGGCGACCTTGTCGACTTCTCCGCCTACGCCAACCGCCACGCCTTCGTCCACCTCCCCCAGTGGGTCCTCCAGCAACGCCGCGACCGCAAAAACCTCGACATCCTCGAACGAAAGGGAATCATCACCCCACCGGAGCCCTACACGTGCGGCGTGTGCGGGCGCAAGTGCAAGACCCACCTCGACCTAAAAAAACACTTCAAGCAGCTCCACCAGCGTGAGCGCCAGAAGAAGCTCAACCGTCTCAAGTCCTTGAAAGGAAAAAAACGGCACCGTTTCAAAGAACGTTTTTTGCGCGGGAACCATAAGTATGACGATGCGGCGAGGACGCTTGTAGTGCCCAAGGTCGGGTACGGGCTGGCGGCGGAGCTGAGGCGAGCGGGGGTGTTTGTGAAGACTGTGCAGGATAAGCCTCAGGCGGCGGATTGGGCCTTGAAGAGGCAAATGGTGCACTCGATGAGTAGAGGGATTGATTGGCTGTTTTTGGTTTCAGATGATTCGGATTTTTCGGAGATGTTGAGGAGGGCCAGGGAGGCGGATTTGGGGACCGTGGTGGTCGGGGATTGGGATAGGGCGCTCGGGCGCCACGCTGATTTGTGGGTGCCGTGGAGTGGGGTGGAGAATGGGGAGGTTGGTGATTTGGTGCCCAAGAGAAGAAGGGAGAATAGTAGGAGAAGAGAACAGGGAGAAGAACATGGTTTTGGTTTGGAAGATGATGATGATGATGATGGTGAGGATGAGGAATTGGGGCAAGAGTATATGTTGTTGTATGATGATGATGATGATGATGAAGGAGAAGAGGAAGATGGCTTATATATTTTTTGA

Predicted protein sequences of Glyma17g35830

Limit To All Plant Sequences

>Glyma17g35830.2   sequence type=predicted peptide   gene model=Glyma17g35830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGANEKNMKNSLFLLHNANTIHFNLHSQITLPSIPLTTITTTKPFPHNRHFPRIQCCSNNNNNNSIEIDMVKNSQGIYAPKASKVVVLWDLDNKPPRGPPYDVAISLKTLAARFGDLVDFSAYANRHAFVHLPQWVLQQRRDRKNLDILERKGIITPPEPYTCGVCGRKCKTHLDLKKHFKQLHQRERQKKLNRLKSLKGKKRHRFKERFLRGNHKYDDAARTLVVPKVGYGLAAELRRAGVFVKTVQDKPQAADWALKRQMVHSMSRGIDWLFLVSDDSDFSEMLRRAREADLGTVVVGDWDRALGRHADLWVPWSGVENGEVGDLVPKRRRENSRRREQGEEHGFGLEDDDDDDGEDEELGQEYMLLYDDDDDDEGEEEDGLYIF*

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