Glyma17g35800 - SoyBase

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Report for Sequence Feature Glyma17g35800

Feature Type:	gene_model
Chromosome:	Gm17
Start:	39804027
stop:	39810838
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g35800

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G36480	AT	Annotation by Michelle Graham. TAIR10: long-chain base1 \| chr4:17218598-17221124 FORWARD LENGTH=482	SoyBase	E_val: 0	ISS
GO:0016049	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell growth	SoyBase	N/A	ISS
GO:0030148	GO-bp	Annotation by Michelle Graham. GO Biological Process: sphingolipid biosynthetic process	SoyBase	N/A	ISS
GO:0043067	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of programmed cell death	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004758	GO-mf	Annotation by Michelle Graham. GO Molecular Function: serine C-palmitoyltransferase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0016740	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity	SoyBase	N/A	ISS
GO:0030170	GO-mf	Annotation by Michelle Graham. GO Molecular Function: pyridoxal phosphate binding	SoyBase	N/A	ISS
KOG1358	KOG	Serine palmitoyltransferase	JGI		ISS
PTHR13693	Panther	CLASS II AMINOTRANSFERASE/8-AMINO-7-OXONONANOATE SYNTHASE	JGI		ISS
PTHR13693:SF2	Panther	SERINE PALMITOYLTRANSFERASE 2-RELATED	JGI		ISS
PF00155	PFAM	Aminotransferase class I and II	JGI		ISS
UniRef100_G7K743	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Serine palmitoyltransferase n=1 Tax=Medicago truncatula RepID=G7K743_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233E688	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E688 related cluster n=1 Tax=unknown RepID=UPI000233E688	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g35800

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g35800

Paralog	Evidence	Comments
Glyma14g09380	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g35800 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g239700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g35800

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g35800

Limit To All Plant Sequences

>Glyma17g35800.3   sequence type=transcript   gene model=Glyma17g35800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTTAATTTTGTTATCGTCTTCCACATCAACGCAGATGCAGCCCAAAAAGAAAACAAGAAAAGAAGAGGGGAACTTTCCGGTGAAAAAGAAAAATAGAAAGCGAATGAAGGAAGAGACGAGGAAAGGAGGGAGAGAAGAAAACTTCGTGTGCATCATGACAACCGTTAAGTTACGCGTAACAATGCATGACGTGGCATCATCCTAGCCCTCGGATCATTCATCAATCCAAAACTCCATCAAATTTCCCCACTTGCCATTCTTTTCCGTTCTTCTCTTCCATTCATTCGCATCTCATTCTGAATCTTGCGCCGTTTCCCTCTCCCACTCGCCAGGTACGTCATGTCGTTTTTGCTTCCCCGTTGTTGCGTCGATACGACTTGTCGTTTAGCACGTTCATGTTCATGTTCGGTTCGTGTGTGTTGCAGTGAGGTGATTTGATTTGATTTTGTTGCGGAATTTTTTAGAAGTGTGAATGTTCGTTCATGCATGAGCGGCTCTTAAAGTTGCCTTGCGGATTCGATTGCGATATATTGAGACTGCGATGGCCTCAGCCGTCGTGAATTTCTTGAACGCGACGTTGGATTGGGTGACGTTTGCGTCGGATGGTCCTTCTGCGCGAGCTGTAGTTTTCGGAGTCCATATCGGTGGACATTTGTTTATCGAAGTGTTTTTGCTAGTTGTCATACTTTTCTTGCTTTCACAGAAAAGTTACAAGCCTCCTAAAAGGCCTTTAACAAATAAGGAAATTGATGAGTTATGTGACGAATGGGTTCCAGAACCCCTTATTCCTTCTCTTAATAAAGAGTTGCAGTATGAACCACCAGTGCTGGAGAGTGCTGCTGGGCCACATACCATAATTAATGGCAAAGAAGTTGTCAATTTTGCTTCAGCAAACTATCTTGGGTTTATAGGTCATCCAAAGCTACTTGACTCATGTTCTTCTGCTTTAGCGAAATACGGTGTTGGTTCTTGTGGTCCCCGTGGATTTTATGGGACAATTGATGTCCACCTTGACTGTGAAGCAAGAATAGCAAAATTTTTAGGAACCCCTGAATCAATTCTGTACTCTTATGGACTTTCCACCATGTTCAGTGCAATTCCCGCTTTCTCTAAAAAAGGAGATGTAATTGTGGCGGATGAGGGAGTCCACTGGGGAATACAGAATGGCCTTTATCTTTCTAGAAGCACAGTGGTGTATTTTAAGCACAATGACATGGATTCTTTAAGAGAAACTTTAGAGAACATTACTGCCAAATATAAGAAGGCCAAGAATTTGAGGCGTTATATTGTTATTGAAGCTGTCTACCAGAATTCTGGGGAAATAGCACCCTTGGACGAGATCATTAAATTGAAGGAAAAATATCGCTTTCGTGTTTTGCTAGATGAGAGCAACTCATTGGGTGTGCTTGGAAGTTCTGGAAGAGGTCTCACTGAATACTGTGGAGTTCCAGTTGAGAAGATAGACATTATAACTGCTTCTATGGGACATGCATTAGCCACAGAAGGAGGATTCTGCACTGGAAGTACAAGAGTTATAGATCACCAACGATTGAGTAGCTCTGGTTATGTCTTTTCTGCTTCTTTGCCCCCATATCTTGCAAGTGCTGCAATTACAGCTATTGATGTCCTGGAGGAAAATCCCAATCTGATAAAAAAGCTGAAGAAAAATATTGCTTTTTTAAGAAAAGGATTGTCAAAAATACCAGGCATCACAATTACAAGTAATCCAGAGTCACCTATTGTTTATTTGAGATTAGAGAAATCAAGAGGTTCCATGAAAGATGACCTGCATCTGCTTGAAAATATCGCGGAACGGGTTTTGAAAGAAGAATCTGTATTTGTGGTTGTTTCCAAAAGATCAACATTGGACAAATGCCGTTTGCCTGTGGGAATTAGATTGTTTGTTTCTGCTGGGCATTCAGAGTCTGATCTGCTCAAGGCATCTGAATCATTGAAAAAGGTTGTAGCATCAGTCCTGGGTGGTCAGAATTGAACGCTCTACATCTTTCTTTTTCATCTAATGTACCAAAACATAAGTTCGATTCCATGTGTTTAGGTGAGCAATTTTGAAATCCAGGCGATAGAGAAAGTCCCGTAGTTCTTAATTTGTGTAGTATTTTATGTTCCAGTTTAGGGTAACAGTATTTTGTGCGTGTTGCTCATTGGTTGTCTAAAGTAGTAGAATAAGGATTTATTGTTTCTTGTCATGAGTTGGGGAATATACCTATGAATTACATTCCGATATCAAAAGTATCAATGTTACATTTTTCATTCATTAGCCATTCAACAATAAAGCCGGCGAAGGTCCTTACCAGTTACCATTGTTTGAATACGTA

Coding sequences of Glyma17g35800

Limit To All Plant Sequences

>Glyma17g35800.2   sequence type=CDS   gene model=Glyma17g35800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTCAGCCGTCGTGAATTTCTTGAACGCGACGTTGGATTGGGTGACGTTTGCGTCGGATGGTCCTTCTGCGCGAGCTGTAGTTTTCGGAGTCCATATCGGTGGACATTTGTTTATCGAAGTGTTTTTGCTAGTTGTCATACTTTTCTTGCTTTCACAGAAAAGTTACAAGCCTCCTAAAAGGCCTTTAACAAATAAGGAAATTGATGAGTTATGTGACGAATGGGTTCCAGAACCCCTTATTCCTTCTCTTAATAAAGAGTTGCAGTATGAACCACCAGTGCTGGAGAGTGCTGCTGGGCCACATACCATAATTAATGGCAAAGAAGTTGTCAATTTTGCTTCAGCAAACTATCTTGGGTTTATAGGTCATCCAAAGCTACTTGACTCATGTTCTTCTGCTTTAGCGAAATACGGTGTTGGTTCTTGTGGTCCCCGTGGATTTTATGGGACAATTGATGTCCACCTTGACTGTGAAGCAAGAATAGCAAAATTTTTAGGAACCCCTGAATCAATTCTGTACTCTTATGGACTTTCCACCATGTTCAGTGCAATTCCCGCTTTCTCTAAAAAAGGAGATGTAATTGTGGCGGATGAGGGAGTCCACTGGGGAATACAGAATGGCCTTTATCTTTCTAGAAGCACAGTGGTGTATTTTAAGCACAATGACATGGATTCTTTAAGAGAAACTTTAGAGAACATTACTGCCAAATATAAGAAGGCCAAGAATTTGAGGCGTTATATTGTTATTGAAGCTGTCTACCAGAATTCTGGGGAAATAGCACCCTTGGACGAGATCATTAAATTGAAGGAAAAATATCGCTTTCGTGTTTTGCTAGATGAGAGCAACTCATTGGGTGTGCTTGGAAGTTCTGGAAGAGGTCTCACTGAATACTGTGGAGTTCCAGTTGAGAAGATAGACATTATAACTGCTTCTATGGGACATGCATTAGCCACAGAAGGAGGATTCTGCACTGGAAGTACAAGAGTTATAGATCACCAACGATTGAGTAGCTCTGGTTATGTCTTTTCTGCTTCTTTGCCCCCATATCTTGCAAGTGCTGCAATTACAGCTATTGATGTCCTGGAGGAAAATCCCAATCTGATAAAAAAGCTGAAGAAAAATATTGCTTTTTTAAGAAAAGGATTGTCAAAAATACCAGGCATCACAATTACAAGTAATCCAGAGTCACCTATTGTTTATTTGAGATTAGAGAAATCAAGAGGTTCCATGAAAGATGACCTGCATCTGCTTGAAAATATCGCGGAACGGGTTTTGAAAGAAGAATCTGTATTTGTGGTTGTTTCCAAAAGATCAACATTGGACAAATGCCGTTTGCCTGTGGGAATTAGATTGTTTGTTTCTGCTGGGCATTCAGAGTCTGATCTGCTCAAGGCATCTGAATCATTGAAAAAGGTTGTAGCATCAGTCCTGGGTGGTCAGAATTGA

>Glyma17g35800.3   sequence type=CDS   gene model=Glyma17g35800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTCAGCCGTCGTGAATTTCTTGAACGCGACGTTGGATTGGGTGACGTTTGCGTCGGATGGTCCTTCTGCGCGAGCTGTAGTTTTCGGAGTCCATATCGGTGGACATTTGTTTATCGAAGTGTTTTTGCTAGTTGTCATACTTTTCTTGCTTTCACAGAAAAGTTACAAGCCTCCTAAAAGGCCTTTAACAAATAAGGAAATTGATGAGTTATGTGACGAATGGGTTCCAGAACCCCTTATTCCTTCTCTTAATAAAGAGTTGCAGTATGAACCACCAGTGCTGGAGAGTGCTGCTGGGCCACATACCATAATTAATGGCAAAGAAGTTGTCAATTTTGCTTCAGCAAACTATCTTGGGTTTATAGGTCATCCAAAGCTACTTGACTCATGTTCTTCTGCTTTAGCGAAATACGGTGTTGGTTCTTGTGGTCCCCGTGGATTTTATGGGACAATTGATGTCCACCTTGACTGTGAAGCAAGAATAGCAAAATTTTTAGGAACCCCTGAATCAATTCTGTACTCTTATGGACTTTCCACCATGTTCAGTGCAATTCCCGCTTTCTCTAAAAAAGGAGATGTAATTGTGGCGGATGAGGGAGTCCACTGGGGAATACAGAATGGCCTTTATCTTTCTAGAAGCACAGTGGTGTATTTTAAGCACAATGACATGGATTCTTTAAGAGAAACTTTAGAGAACATTACTGCCAAATATAAGAAGGCCAAGAATTTGAGGCGTTATATTGTTATTGAAGCTGTCTACCAGAATTCTGGGGAAATAGCACCCTTGGACGAGATCATTAAATTGAAGGAAAAATATCGCTTTCGTGTTTTGCTAGATGAGAGCAACTCATTGGGTGTGCTTGGAAGTTCTGGAAGAGGTCTCACTGAATACTGTGGAGTTCCAGTTGAGAAGATAGACATTATAACTGCTTCTATGGGACATGCATTAGCCACAGAAGGAGGATTCTGCACTGGAAGTACAAGAGTTATAGATCACCAACGATTGAGTAGCTCTGGTTATGTCTTTTCTGCTTCTTTGCCCCCATATCTTGCAAGTGCTGCAATTACAGCTATTGATGTCCTGGAGGAAAATCCCAATCTGATAAAAAAGCTGAAGAAAAATATTGCTTTTTTAAGAAAAGGATTGTCAAAAATACCAGGCATCACAATTACAAGTAATCCAGAGTCACCTATTGTTTATTTGAGATTAGAGAAATCAAGAGGTTCCATGAAAGATGACCTGCATCTGCTTGAAAATATCGCGGAACGGGTTTTGAAAGAAGAATCTGTATTTGTGGTTGTTTCCAAAAGATCAACATTGGACAAATGCCGTTTGCCTGTGGGAATTAGATTGTTTGTTTCTGCTGGGCATTCAGAGTCTGATCTGCTCAAGGCATCTGAATCATTGAAAAAGGTTGTAGCATCAGTCCTGGGTGGTCAGAATTGA

Predicted protein sequences of Glyma17g35800

Limit To All Plant Sequences

>Glyma17g35800.2   sequence type=predicted peptide   gene model=Glyma17g35800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASAVVNFLNATLDWVTFASDGPSARAVVFGVHIGGHLFIEVFLLVVILFLLSQKSYKPPKRPLTNKEIDELCDEWVPEPLIPSLNKELQYEPPVLESAAGPHTIINGKEVVNFASANYLGFIGHPKLLDSCSSALAKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPESILYSYGLSTMFSAIPAFSKKGDVIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRETLENITAKYKKAKNLRRYIVIEAVYQNSGEIAPLDEIIKLKEKYRFRVLLDESNSLGVLGSSGRGLTEYCGVPVEKIDIITASMGHALATEGGFCTGSTRVIDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPNLIKKLKKNIAFLRKGLSKIPGITITSNPESPIVYLRLEKSRGSMKDDLHLLENIAERVLKEESVFVVVSKRSTLDKCRLPVGIRLFVSAGHSESDLLKASESLKKVVASVLGGQN*

>Glyma17g35800.3   sequence type=predicted peptide   gene model=Glyma17g35800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASAVVNFLNATLDWVTFASDGPSARAVVFGVHIGGHLFIEVFLLVVILFLLSQKSYKPPKRPLTNKEIDELCDEWVPEPLIPSLNKELQYEPPVLESAAGPHTIINGKEVVNFASANYLGFIGHPKLLDSCSSALAKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPESILYSYGLSTMFSAIPAFSKKGDVIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRETLENITAKYKKAKNLRRYIVIEAVYQNSGEIAPLDEIIKLKEKYRFRVLLDESNSLGVLGSSGRGLTEYCGVPVEKIDIITASMGHALATEGGFCTGSTRVIDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPNLIKKLKKNIAFLRKGLSKIPGITITSNPESPIVYLRLEKSRGSMKDDLHLLENIAERVLKEESVFVVVSKRSTLDKCRLPVGIRLFVSAGHSESDLLKASESLKKVVASVLGGQN*

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