Report for Sequence Feature Glyma17g35700
Feature Type: gene_model
Chromosome: Gm17
Start: 39706668
stop: 39711546
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma17g35700
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G07390 AT
Annotation by Michelle Graham. TAIR10: Mannose-P-dolichol utilization defect 1 protein | chr4:4195750-4197317 FORWARD LENGTH=235
SoyBase E_val: 9.00E-130 ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
KOG3211
KOG
Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization
JGI ISS
PTHR12226 Panther
MANNOSE-P-DOLICHOL UTILIZATION DEFECT 1 (LEC35)-RELATED
JGI ISS
PTHR12226:SF2 Panther
gb def: similarity to lec35 protein [magnaporthe grisea]
JGI ISS
PF04193 PFAM
PQ loop repeat
JGI ISS
UniRef100_C6TJ27 UniRef
Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6TJ27_SOYBN
SoyBase E_val: 4.00E-168 ISS
UniRef100_E5GB83 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Mannose-P-dolichol utilization defect 1 protein n=1 Tax=Cucumis melo subsp. melo RepID=E5GB83_CUCME
SoyBase E_val: 7.00E-140 ISS
Expression Patterns of Glyma17g35700
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma17g35700
Paralog Evidence Comments
Glyma14g09450 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma17g35700 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.17g238800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma17g35700
Coding sequences of Glyma17g35700
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma17g35700.1 sequence type=CDS gene model=Glyma17g35700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAATATCTAGGGATTGATCTAAGCTGCGCCGTTGGATCTCTCCGCCACGGCCAGTTCCCGGAGAAGGATTGCTTGCTCCCTCTCATTTCCAAACTCCTCGGCTACGCCATCGTCGCCGCTTCCACCACCGTCAAACTTCCCCAGATTATGAAAATTCTGAAGCATCAGAGTGTGAGAGGCCTTAGCATGATATCCTTCGAGCTTGAAGTTATTGGATATACCATTGCCTTGGCTTACTGTCTCCACAAAGGCCTTCCATTTTCGGCTTACGGAGAGTTGTTGTTTCTTTTGATCCAAGCTTTAGTATTGGTTGCCATAATCTACTACTATTCTCGACCTTTGCATGCAATAACATGGATCCGGGCATTGCTATATTGTGCTGTAGCACCCACTATCTTAGCTGGTCAAATTGATCCTCTACTCTTTGAAGCTCTGTATGCATCACAGCATGCAATCTTTCTCTTTGCAAGGATCCCACAAATATGGCAAAACTTTTCTAACAAAAGTACAGGTGAACTCAGCTTCATAACTTCTTTTATGAATTTTGGAGGTTCAATGGTTAGAGTATTCACCACCATCCAAGAAAGTGCACCAAAAAGTGTTCTATTGGGCTATGCAATTGGTGTCGCAACAAATTTTACCATCTTGAGTCAGATTATAGCATACCAAAAGCCTCAGGTTGGAAAGGAGAAGAAAACAAAGTAA
Predicted protein sequences of Glyma17g35700
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma17g35700.1 sequence type=predicted peptide gene model=Glyma17g35700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEYLGIDLSCAVGSLRHGQFPEKDCLLPLISKLLGYAIVAASTTVKLPQIMKILKHQSVRGLSMISFELEVIGYTIALAYCLHKGLPFSAYGELLFLLIQALVLVAIIYYYSRPLHAITWIRALLYCAVAPTILAGQIDPLLFEALYASQHAIFLFARIPQIWQNFSNKSTGELSFITSFMNFGGSMVRVFTTIQESAPKSVLLGYAIGVATNFTILSQIIAYQKPQVGKEKKTK*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
