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Report for Sequence Feature Glyma17g35671

Feature Type:gene_model
Chromosome:Gm17
Start:39663549
stop:39665824
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g35671
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G34160AT Annotation by Michelle Graham. TAIR10: CYCLIN D3;1 | chr4:16357903-16359304 FORWARD LENGTH=376 SoyBaseE_val: 4.00E-54ISS
GO:0000080GO-bp Annotation by Michelle Graham. GO Biological Process: G1 phase of mitotic cell cycle SoyBaseN/AISS
GO:0000082GO-bp Annotation by Michelle Graham. GO Biological Process: G1/S transition of mitotic cell cycle SoyBaseN/AISS
GO:0000087GO-bp Annotation by Michelle Graham. GO Biological Process: M phase of mitotic cell cycle SoyBaseN/AISS
GO:0000280GO-bp Annotation by Michelle Graham. GO Biological Process: nuclear division SoyBaseN/AISS
GO:0000911GO-bp Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation SoyBaseN/AISS
GO:0006275GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of DNA replication SoyBaseN/AISS
GO:0009735GO-bp Annotation by Michelle Graham. GO Biological Process: response to cytokinin stimulus SoyBaseN/AISS
GO:0009741GO-bp Annotation by Michelle Graham. GO Biological Process: response to brassinosteroid stimulus SoyBaseN/AISS
GO:0009744GO-bp Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus SoyBaseN/AISS
GO:0010075GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth SoyBaseN/AISS
GO:0010103GO-bp Annotation by Michelle Graham. GO Biological Process: stomatal complex morphogenesis SoyBaseN/AISS
GO:0010389GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of G2/M transition of mitotic cell cycle SoyBaseN/AISS
GO:0010583GO-bp Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone SoyBaseN/AISS
GO:0042023GO-bp Annotation by Michelle Graham. GO Biological Process: DNA endoreduplication SoyBaseN/AISS
GO:0042127GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of cell proliferation SoyBaseN/AISS
GO:0048316GO-bp Annotation by Michelle Graham. GO Biological Process: seed development SoyBaseN/AISS
GO:0051225GO-bp Annotation by Michelle Graham. GO Biological Process: spindle assembly SoyBaseN/AISS
GO:0051322GO-bp Annotation by Michelle Graham. GO Biological Process: anaphase SoyBaseN/AISS
GO:0051329GO-bp Annotation by Michelle Graham. GO Biological Process: interphase of mitotic cell cycle SoyBaseN/AISS
GO:0051726GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0016538GO-mf Annotation by Michelle Graham. GO Molecular Function: cyclin-dependent protein kinase regulator activity SoyBaseN/AISS
PTHR10177Panther CYCLINS JGI ISS
PTHR10177:SF76Panther CYCLIN-D JGI ISS
PF00134PFAM Cyclin, N-terminal domain JGI ISS
UniRef100_C6TDB7UniRef Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6TDB7_SOYBN SoyBaseE_val: 4.00E-148ISS
UniRef100_G7J6Z8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Cyclin D3-1 n=2 Tax=Medicago truncatula RepID=G7J6Z8_MEDTR SoyBaseE_val: 3.00E-71ISS

Expression Patterns of Glyma17g35671
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g35671 not represented in the dataset
Glyma17g35671 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g35671
ParalogEvidenceComments
Glyma14g09500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g35671 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g238400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g35671
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma17g35671
>Glyma17g35671.1   sequence type=CDS   gene model=Glyma17g35671   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCACTACACCATCACCTCTTCTTAGAAGAAACTAAAATGGCACATCGTTACCCAAAACCCCTTCTAGACACCCTCTACTGCTTAGAAGATCACATTCATTGGGAGGAAGAAGAACAAGTAGACTATAATGAGTACAGTAACACAACAACCACAAACACTAATTCCTCCAATGTGGTCTTGTTAGAACACGACCTCTTCTGGGACCACGAGGAGCTACCTTCTCTTCTCGCCAAAGAACACCAAAACCAACTCTCGAATACTCTTCTCCAAAACAACCTCGTTTTAGCCTCATCTCGAGAAGAAGCAGTGGAGTGGATTCTGAAAGTAAATGCTCGTTATTCCTTTTCTACCCTCACTGCGGTTCTCGCTGTTAACTACCTCGATAGGTTCCTCTTCAGCTTCAGATTCCAAAACGACAACAACGACAACAACAACAACAACAATCCTTGGCTCACACAACTATCCGCAGTGGCTTGCCTCTCTCTCGCTGCCAAATTTGAAGAGACCCACGTGCCCCTTTTTATAGACCTCCAATTGGAGGAGAGTAAGTACTTGTTTGAAGCGAAAACCGTTAAGAGAATGGAAATCTTGGTTCTTTCCACACTTGGGTGGAAGATGATCCTTGTAACACCTCTTCATTCTTGA
Predicted protein sequences of Glyma17g35671
>Glyma17g35671.1   sequence type=predicted peptide   gene model=Glyma17g35671   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPLHHHLFLEETKMAHRYPKPLLDTLYCLEDHIHWEEEEQVDYNEYSNTTTTNTNSSNVVLLEHDLFWDHEELPSLLAKEHQNQLSNTLLQNNLVLASSREEAVEWILKVNARYSFSTLTAVLAVNYLDRFLFSFRFQNDNNDNNNNNNPWLTQLSAVACLSLAAKFEETHVPLFIDLQLEESKYLFEAKTVKRMEILVLSTLGWKMILVTPLHS*






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