Glyma17g35561 - SoyBase

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Report for Sequence Feature Glyma17g35561

Feature Type:	gene_model
Chromosome:	Gm17
Start:	39538058
stop:	39540865
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g35561

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G47210	AT	Annotation by Michelle Graham. TAIR10: cyclin-dependent protein kinase 3;2 \| chr1:17301036-17302584 FORWARD LENGTH=372	SoyBase	E_val: 9.00E-35	ISS
GO:0000079	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of cyclin-dependent protein kinase activity	SoyBase	N/A	ISS
GO:0010389	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of G2/M transition of mitotic cell cycle	SoyBase	N/A	ISS
GO:0051726	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0004693	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cyclin-dependent protein kinase activity	SoyBase	N/A	ISS
GO:0019901	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase binding	SoyBase	N/A	ISS
PTHR10177	Panther	CYCLINS	JGI		ISS
PTHR10177:SF49	Panther	G2/MITOTIC-SPECIFIC CYCLIN	JGI		ISS
PF00134	PFAM	Cyclin, N-terminal domain	JGI		ISS
UniRef100_I1MXJ7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1MXJ7_SOYBN	SoyBase	E_val: 8.00E-103	ISS
UniRef100_Q9M4K9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cyclin A3.1 n=1 Tax=Pisum sativum RepID=Q9M4K9_PEA	SoyBase	E_val: 4.00E-38	ISS

Expression Patterns of Glyma17g35561

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g35561 not represented in the dataset	Glyma17g35561 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g35561 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g237300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g35561

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g35561

Limit To All Plant Sequences

>Glyma17g35561.1   sequence type=CDS   gene model=Glyma17g35561   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGTGGATCCTAGTATGCGACCGTTGCCGGATTATGTTCAGAATGTTCAGAGGGAAGTTAGTGCTGACATGCGCTGTGTTCTGGTGGAAGTTGCGGAGGAATACGAGCATGTTTCGGTCACCCTTTACCTTTGTGTCGCTTACGCCGATAGGTTTCTGTCGTTGAATGCAGTATCAACAAAGGGGCTGCAATTGCTTGGGGTTGCTGCGATGCTTATTGCTTCAAAATACGAAGAGATTAAGGCACCTGCAGTTGGGAAATTTTGTTACATAATGGATTACACATACTCCAAGGATGAAGACATTCTTAAGGTGTGTTCCTTTGTTGATTCTATGTCCATATGTTGCATTGATTTTGGTCGTTTTAGTTGCTTTTTTCTTGGCTTGTTGTTTCACTCTGTATGCTTTGCGCTTGTTTGCAGGAGATTCTCTAGAGTTGGCAAGAGGGCGATGGTACTTCTGGAGATCTCAAGTTTGAGTTTCTTAGCTGCTACTTTGCTGAGCTCACTTTGTTGGATTATAATTGTGTGA

Predicted protein sequences of Glyma17g35561

Limit To All Plant Sequences

>Glyma17g35561.1   sequence type=predicted peptide   gene model=Glyma17g35561   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEVDPSMRPLPDYVQNVQREVSADMRCVLVEVAEEYEHVSVTLYLCVAYADRFLSLNAVSTKGLQLLGVAAMLIASKYEEIKAPAVGKFCYIMDYTYSKDEDILKVCSFVDSMSICCIDFGRFSCFFLGLLFHSVCFALVCRRFSRVGKRAMVLLEISSLSFLAATLLSSLCWIIIV*

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