Glyma17g35480 - SoyBase

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Report for Sequence Feature Glyma17g35480

Feature Type:	gene_model
Chromosome:	Gm17
Start:	39464348
stop:	39468437
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g35480

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G24230	AT	Annotation by Michelle Graham. TAIR10: acyl-CoA-binding domain 3 \| chr4:12567122-12568754 REVERSE LENGTH=364	SoyBase	E_val: 3.00E-40	ISS
GO:0006952	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response	SoyBase	N/A	ISS
GO:0009617	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to bacterium	SoyBase	N/A	ISS
GO:0009646	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to absence of light	SoyBase	N/A	ISS
GO:0015908	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid transport	SoyBase	N/A	ISS
GO:0042742	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to bacterium	SoyBase	N/A	ISS
GO:0050832	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to fungus	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005615	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular space	SoyBase	N/A	ISS
GO:0000062	GO-mf	Annotation by Michelle Graham. GO Molecular Function: fatty-acyl-CoA binding	SoyBase	N/A	ISS
KOG0817	KOG	Acyl-CoA-binding protein	JGI		ISS
PTHR23310	Panther	ACYL-COA-BINDING PROTEIN, ACBP	JGI		ISS
PTHR23310:SF14	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00887	PFAM	Acyl CoA binding protein	JGI		ISS
UniRef100_E2IFU9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Acyl-CoA-binding protein n=1 Tax=Vitis vinifera RepID=E2IFU9_VITVI	SoyBase	E_val: 2.00E-40	ISS
UniRef100_I1MXJ0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1MXJ0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g35480

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g35480

Paralog	Evidence	Comments
Glyma14g09680	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g35480 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g236700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g35480

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g35480

Limit To All Plant Sequences

>Glyma17g35480.1   sequence type=CDS   gene model=Glyma17g35480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGCTTCTAATGGTGGTGGATGATTTTTTTGTCACGGCGTCCCTGGCGCTTCTTCTTACCTTCATCGTCTTAAAGCTCGTCGAGGCCATGAACGACACTCACGCCGCACCAAAACGTCACGTCGTCCACCTCGAACCGGATCATCCGGTTTCTCGAGCCAAGACCAAGGTCGGTCTCATTAGTCCGGTTCAGGAGGAAATTGCCACGTGTGCAGTAGGAGCCAAACACGGGATAGAAAAAAAGGCTGCCGTCAAATCGGTTCGTCCTCGTGGGAAACGGTTCACCGTTAACCCCGCTCAAAGCAAGGTTAAGGTCGAACCGGTTCCTCCCGCTCAAAGCGAGAGCACGATCGGTTTTGTTAGTCCGGTTCAATCTGCCATGTGTGTGGAGACTGAACGCAAGGTAGAAGAAGCTATGGTCGAACCGGAACTGGTTCAGCTCGTTAAGACCGAGGGCACGGTTGGTTTTATTAGTCCGATTCAAGCTGACACCTGTGTAGGAACAGAAGACAAGAAAGAAGAAGCTACGGTCGAATTCGATTCCCACGTTGTTGTGGAGTCACCGGTGAAATCAGACACAGACATTGTCGTTACAGAGGAAATAGCTGAGGGCAATGAAGGAACACAAGAATTGGATGATTCGGCGGAGAAGAGGATCGTGGAAAGTGTTGAAGAAATCAACGTGGAACCTTCTGTTGTAGATAGCGACGGAAAAGAGAATGAAGATGATTATGATGATGATTGGGAAGGGATTGAAAGGAGTGAATTGGAGAAAGAATTTATGGCGGCTACGGAATTTGTTAGTGGCGAGGAAAATCGATTGGGGGGTGTAGGAAGCAATTTGAGAATGGAGTTGTATGGGCTTTACAAGGTTGCGACGGAAGGGCTTTGCCGTGAACCTCAACCAATGGCTCTCAAGCTCGCCGCACGTGCCAAGTGGAATGCTTGGCAAAAGCTGGGGAACATGAATCCAGAGGTTGCAATGGAGCAGTATATCAGCCTTCTTTCGGATAAATTTCCCGGATGGATCAAAGATACTTCTGCTGGAATGAGTGAACATGAAACCACAAGGCCTGAAGTTTCTGGGTCCGATGCTTCTGATTTGAGCACAACTTTGTCTCATCAACAAATGATCATAACTGAAAGGGAGCTTGAACAAGAGTCTGATTCCAAGGACCGTAGCCCACTTACAGAGACAGATTTGGAGAACAATGTTAACAAATGA

Predicted protein sequences of Glyma17g35480

Limit To All Plant Sequences

>Glyma17g35480.1   sequence type=predicted peptide   gene model=Glyma17g35480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MELLMVVDDFFVTASLALLLTFIVLKLVEAMNDTHAAPKRHVVHLEPDHPVSRAKTKVGLISPVQEEIATCAVGAKHGIEKKAAVKSVRPRGKRFTVNPAQSKVKVEPVPPAQSESTIGFVSPVQSAMCVETERKVEEAMVEPELVQLVKTEGTVGFISPIQADTCVGTEDKKEEATVEFDSHVVVESPVKSDTDIVVTEEIAEGNEGTQELDDSAEKRIVESVEEINVEPSVVDSDGKENEDDYDDDWEGIERSELEKEFMAATEFVSGEENRLGGVGSNLRMELYGLYKVATEGLCREPQPMALKLAARAKWNAWQKLGNMNPEVAMEQYISLLSDKFPGWIKDTSAGMSEHETTRPEVSGSDASDLSTTLSHQQMIITERELEQESDSKDRSPLTETDLENNVNK*

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