Glyma17g35450 - SoyBase

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Report for Sequence Feature Glyma17g35450

Feature Type:	gene_model
Chromosome:	Gm17
Start:	39424055
stop:	39430320
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g35450

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G49890	AT	Annotation by Michelle Graham. TAIR10: Family of unknown function (DUF566) \| chr1:18470282-18473463 FORWARD LENGTH=659	SoyBase	E_val: 3.00E-125	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
PF04484	PFAM	Family of unknown function (DUF566)	JGI		ISS
UniRef100_Q9LJN9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Emb\|CAB52444.1 n=1 Tax=Arabidopsis thaliana RepID=Q9LJN9_ARATH	SoyBase	E_val: 9.00E-112	ISS
UniRef100_UPI000233E652	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E652 related cluster n=1 Tax=unknown RepID=UPI000233E652	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g35450

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g35450

Paralog	Evidence	Comments
Glyma14g09720	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g35450 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g236400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g35450

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g35450

Limit To All Plant Sequences

>Glyma17g35450.1   sequence type=CDS   gene model=Glyma17g35450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGCTGCAATTTCTACGGCGATAAACCCCAAGCGAGCGCAGACGCCAACTCCAAGAAGAACTCCTCTGTTACCTTCTGAATCGGACAATGCACTCGCTCCACCACGCAGGCCCAAAGCACGAGAAGTTACTTCTCGCTACATGTCTTCTTCTTCGTCTTCGTCTTCCTCTGTTTCGTCTCCTCCGAGACGATGCCAATCGCCGCTGGTGGTGACAAGGACGGTGAATTCCGCAAAAACGAAGCAAACGCCGACGCCGACTCCGACTCCGACGCCGTTTGCGAAGCGGTCACAGTCGGCGGAACGCCGGCGACAAGGAACTCCTCGACCTACGACGGAAGCTCCGGCGGCTCAGAAAGTGCTCTTCACTTCCACCAGGAGCTTGTCCGTCTCGTTCCAGGGCGAGTCGTTCCCGATCCAGGTTAGAACGACGAAACCGCCGCCGCCGTCACAGAGTTTCCGGAAGAGCACGCCTGAGAGGAGGAAGGCCGCGACAACGACGACGCCAACGCCGGTGAGAAACGGAAATTCGGATCACACCGAGAATGCGAGGTCATTAGATCGGCACCGGTGGCCGGCAAAATCGCAATATGCTGATTCCACCGCGCGAAAACAAACTGACGCGCCGGCGAGCGTGGCTAGGTCGTTGCAGAATGTCATGGCGGACGTTCGAGGTTCTCTCGACGCGACGACGTTGAGATCGGAGAGCTACAAAACTAACGGATCTGAGTTTCAGCACGAGGCTGAGTCTATTGCTTCTGATACCGAAAGCGTAACTTCTGGAAGTTCCTCTGGAGAAGGAATTCGAGGTTCTCGAGGACTCGTGGTTCCAGCGAGGTTCTGGCAAGAGCATAATAACCGTTTACGGCGCCAAACGGAAACTCCGTCTTCTAGAAACGGCGTAATTGGAAACAAAGGAACGGTTAGTACTCCTAGTCCTAGACTTCTGGTGCAGAAGAAAACGGCGTTGGATTGTCCTGTTTCGTCGCCACGTGGAGTTCTGAATAGCCGTGCTCTTCAAGGTTCTCCGATCCGTTCCGCGGTGCGTCCTGCGTCTCCGAGTAAGCTAGCGACGCCGTCACTGTGGTCTCCTTCGAGAGGAGTGAGTCCGTCACGAGCGCAAAACGGCGTCGTCAGTGGCTTGAGTAGTAGGTTCGGTGGTGGTAGTGAACCTTCTGTTTTGAGCTTCGCTGTTGATGTTTCGAGGGGGAAGGTAGCGGAGAACCGGATCTTTGATGCGCATTTATTGAGACTCTTCCATAACAGACTCCTTCAGTGGCGTTTTGTTAACGCCAGAGCTGATGCTGCTCTCTCTGCGCAGACATTGAATGCGGAGAAAAGCCTCTATGATGCATGGATTGCTATGTCGAATCTACGAGAATCCGTTAGAGCCAAAAGAGCAGAGTTTCAGTTGCTGAAGCAACAATTTAAGTTAATATCCATCCTGAAGGATCAAATGGTATATTTGGAAGATTGGGCTACTTTGGATCGGTTGTACTCTAGTTCACTTTCAGGAGCTACTGAAGCCCTAAGGGCTAGCACTCTTCGACTTCCTGTTGTTGGTGGGGCCAAGACAGATTTGCTAAATTTGAAGGATGCAATTAGCTCAGCAATGGATGTGATGCAGGCAATGGCATCCTCCATATGCCTATTGTCACCAAAGGTTGGGCAATTAAATTCGCTGGTTGTTGAAGTTGCCAACTTAAGTGCGAAGGAGCGTGTTTTGCTTGAAGAGTGCAGAGACCTTTTGTCAGCGATTACAACTATGCAGGTTAGAGAGTGTAGCCTGAGAACGCATGTTGCTCAACTGAAATGCCAACCCAGAAGTACTACAGTGAAAGTAACAAGCAAATAA

Predicted protein sequences of Glyma17g35450

Limit To All Plant Sequences

>Glyma17g35450.1   sequence type=predicted peptide   gene model=Glyma17g35450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVAAISTAINPKRAQTPTPRRTPLLPSESDNALAPPRRPKAREVTSRYMSSSSSSSSSVSSPPRRCQSPLVVTRTVNSAKTKQTPTPTPTPTPFAKRSQSAERRRQGTPRPTTEAPAAQKVLFTSTRSLSVSFQGESFPIQVRTTKPPPPSQSFRKSTPERRKAATTTTPTPVRNGNSDHTENARSLDRHRWPAKSQYADSTARKQTDAPASVARSLQNVMADVRGSLDATTLRSESYKTNGSEFQHEAESIASDTESVTSGSSSGEGIRGSRGLVVPARFWQEHNNRLRRQTETPSSRNGVIGNKGTVSTPSPRLLVQKKTALDCPVSSPRGVLNSRALQGSPIRSAVRPASPSKLATPSLWSPSRGVSPSRAQNGVVSGLSSRFGGGSEPSVLSFAVDVSRGKVAENRIFDAHLLRLFHNRLLQWRFVNARADAALSAQTLNAEKSLYDAWIAMSNLRESVRAKRAEFQLLKQQFKLISILKDQMVYLEDWATLDRLYSSSLSGATEALRASTLRLPVVGGAKTDLLNLKDAISSAMDVMQAMASSICLLSPKVGQLNSLVVEVANLSAKERVLLEECRDLLSAITTMQVRECSLRTHVAQLKCQPRSTTVKVTSK*

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