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Report for Sequence Feature Glyma17g35290

Feature Type:gene_model
Chromosome:Gm17
Start:39269895
stop:39271953
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g35290
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G10200AT Annotation by Michelle Graham. TAIR10: GATA type zinc finger transcription factor family protein | chr1:3346677-3347763 REVERSE LENGTH=190 SoyBaseE_val: 3.00E-115ISS
GO:0051017GO-bp Annotation by Michelle Graham. GO Biological Process: actin filament bundle assembly SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0015629GO-cc Annotation by Michelle Graham. GO Cellular Compartment: actin cytoskeleton SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
GO:0051015GO-mf Annotation by Michelle Graham. GO Molecular Function: actin filament binding SoyBaseN/AISS
KOG1700 KOG Regulatory protein MLP and related LIM proteins JGI ISS
PTHR24206Panther FAMILY NOT NAMED JGI ISS
PTHR24206:SF66Panther JGI ISS
PF00412PFAM LIM domain JGI ISS
UniRef100_B7FH07UniRef Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor lim1 n=1 Tax=Medicago truncatula RepID=B7FH07_MEDTR SoyBaseE_val: 6.00E-129ISS
UniRef100_I1MXH4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MXH4_SOYBN SoyBaseE_val: 3.00E-142ISS

Expression Patterns of Glyma17g35290
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g35290 not represented in the dataset
Glyma17g35290 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g35290
ParalogEvidenceComments
Glyma14g09880 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g35290 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g234700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g35290
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma17g35290
>Glyma17g35290.1   sequence type=CDS   gene model=Glyma17g35290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATTTGCAGGAACAACACAGAAGTGTATGGCCTGTGACAAAACCGTTTATCTGGTTGATAAGTTGACCGCGGATAACCGAGTTTTCCACAAAGCTTGCTTCAGATGCCATCACTGCAAAGGAACCCTCAAGCTGAGCAACTACAACTCTTTTGAGGGAGTTCTTTATTGTAAGCCACACTTTGACCAACTGTTCAAAAGAACAGGGAGCCTTGACAAAAGCTTTGAAGGAACACCAAAAATTGCCAAGCCAGAGAAAAATTTGGAAGAGAAACCTGCAGCAGCCAAAGTCTCAAGTATGTTTGGAGGAACAAGGGACAAATGTGCTGGTTGTCAGAAAACGGTTTATCCCACTGAGAAGGTGACTGTGAATGGAACCCCTTACCATAAGAGTTGTTTCAAATGCTGCCATGGAGGGTGTGTTATCAGTCCTTCCAATTACATAGCACACGAGGGAAAACTCTACTGCAAACACCACCATGTCCAATTGATCAAGGAGAAGGGCAATTTAAGCCAACTTGAAGGTGACAATGAGAAGAGTGCAACTAATGGGAAAATCAATGGTGAAGAAGTTGCCACGGAGACATGA
Predicted protein sequences of Glyma17g35290
>Glyma17g35290.1   sequence type=predicted peptide   gene model=Glyma17g35290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCKPHFDQLFKRTGSLDKSFEGTPKIAKPEKNLEEKPAAAKVSSMFGGTRDKCAGCQKTVYPTEKVTVNGTPYHKSCFKCCHGGCVISPSNYIAHEGKLYCKHHHVQLIKEKGNLSQLEGDNEKSATNGKINGEEVATET*






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