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Integrating Genetics and Genomics to Advance Soybean Research




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Report for Sequence Feature Glyma17g35270

Feature Type:gene_model
Chromosome:Gm17
Start:39262544
stop:39265957
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G31540AT Annotation by Michelle Graham. TAIR10: exocyst subunit exo70 family protein G1 | chr4:15284739-15286802 REVERSE LENGTH=687 SoyBaseE_val: 2.00E-74ISS
GO:0006887GO-bp Annotation by Michelle Graham. GO Biological Process: exocytosis SoyBaseN/AISS
GO:0006904GO-bp Annotation by Michelle Graham. GO Biological Process: vesicle docking involved in exocytosis SoyBaseN/AISS
GO:0000145GO-cc Annotation by Michelle Graham. GO Cellular Compartment: exocyst SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
PTHR12542Panther EXOCYST COMPLEX PROTEIN EXO70-RELATED JGI ISS
PTHR12542:SF7Panther EXOCYST COMPLEX PROTEIN EXO70 JGI ISS
PF03081PFAM Exo70 exocyst complex subunit JGI ISS
UniRef100_G7IBC1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Exocyst complex component n=1 Tax=Medicago truncatula RepID=G7IBC1_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233E4EAUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233E4EA related cluster n=1 Tax=unknown RepID=UPI000233E4EA SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g35270 not represented in the dataset

Glyma17g35270 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma14g09900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g234500 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma17g35270.1   sequence type=CDS   gene model=Glyma17g35270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATTGGAAGAAGATCACCCAACAACAACACTTCTCAAGCTCCAGTCAGCATGTTCCGACCTAAAAACCCTCCTTCGAGCCTCCGAGGAAACACAAGACAACCTGGGAAACACAGACTCAAGGTTTCATCTCTTACAAGGCTCACTCTCCACAGCCTCCAGAGGAATCGCCCCTTTACAATCCCTAGCCATGTCCAGGAAAGCCCTCGACACGAGAATCACCAGAGCCTTGTCCCCAGCACTTACACTCCTCAACACCTTCAAGTTCACAGAGTCTCTCCAGAACAGCCTCGTCGTGCTCTCGACCAAGCTGTCCTCGGAGAAGCCGCATCATGTGCGGCGTCTCCAGAGGCTTCTGGAGTACACCGAGTGCGTGGATCAACTGAACGAGGGTTTAAACAACATAAGCGATGAGGTGGAGGTGGTGATCATGAAACTTCAGGAGGTGGTGGAGTTCATAAGCCGGACGAAGGCGGCGGATCAGTACAGGGAGGCGAGGCTGAGGGAGGCGCTGGGGACGCTGAAGGGGCTGTATGAGATTGAGGTGGATGAGATGAGGTTTCAGGGTTTGCTGGATCAGGCGTTGGTGCATGTGCAGGATGAGTTTGAAGGGTTGTTGCTGAGGATCAAGCATAGGAATTTCGGGGATTTGGTGCACCAACATGGTGATGATTTCAGGGAATTGGGGTCTGAACTGGAAATTCAAGTCCTCAGGAAAATTTCAACCACTCTTGCTGCCAATGATTGCCTAGACATATGCATTGATATATACGTCAAGGCGAGATATAGAAGGGCAGCGAAGGCACTAATGAAGCTAAACCCCGATTACCTGCGAACATACACCCCAGAAGGAATCGACGAAATGGAGTGGGAAACCTTAGAGACAGCCATAACCCTTTGGATCCAACACTTGGAAGTCGCAGTGAAGAAAGTCCTTGTTGCGGAAAAGAAACTCTGCGAAAGAGTCTTGGGCGATTTCATGGAGGGACTAATCTGGCCAGAATGCTTCATTAAGATCTCCGACAAGATCATGGCCGTCTTCTTCCGCTTCGGCGAAGGCGTTGCCCGGAGCAACAAAGAGCCCCAGAAGCTCTTCAAACTCTTGGACATGTTCGAGTCCTTGGAGAAACTCAAACCCGACATGTCACAAATATTCGAAGGCGAATCTGGTGTAGACATATGCACAAGGTTCCGCGAGTTGGAGAAGCTCATCATCGATGCTTCGAGCAAAGTTTTCTTGGAATTGGGTCTCCAAATCGAAGGCAACATCGACGGTCTTCCACCCCCTCAAGACGGTTCCGTTCCAAAACTCGTAAGATACGCTATCAACTATCTCAAATACCTCACCACGGTTAATTATAGAACATCAATGGCTAAGGTTCTCCGAACACAACAAACATGGAAAGATAGTAGTAGTAGTAGCAATGACATGTCTTCGGACGAGGGTTTGTTGAAGCATGCAATTAGCAATGTCATGGATGCGCTGCAACGGAACATTGAGGCAAAGCGTTTGTGTTGCAGGGACAAGGTTTTGGTGCATGTTTTCACGATGAATACTTATTGGTACATTTACATGAGGACGAAGAATACGGAGCTTGGTGAGGTGTTGGGTGAGAAGTTCATGAAAGAAGGTTACAAGGCTGTGGCGGAGGAAAGTGCTTACTTGTATCAGAAGCAAGCGTGGGGGGGTTTGGTTAGGGTTTTGGATGGAGATGATGTGAGGGAGGAAGGGAAAGGGAGTGTGGGAAGAGTGGTGAGTGAAAAGATTGAGGCTTTTTTCAAGGGTTTGAATGAGGTTTGTGAGAGGCATGTTAGAGGGGTGTATAGTATACCTGATGTTGATTTGAGGGAACAAATGAGGGAAGCAACAGTGAGGCTTGTGGTGCCTGTTTATGCTGAGTTTTTGGAGGGTTATTCGGGGTTGTTGCAGAGGAAAGGGTACCCGAGTGTTGAGAGGGTGAATGGGTTGGTGGGGAAGGCTTTTGATGGAGGAAAGCTGAAGGGAAGAGGTTCTGCTTCTAGTGATTGGAATGTTGCAAGGAATTCTGGGTCTCTGGAGAGGGATGTTGTTAGATCACGCAACGATGGTGGTGGTGATGTTTGA

>Glyma17g35270.1   sequence type=predicted peptide   gene model=Glyma17g35270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALEEDHPTTTLLKLQSACSDLKTLLRASEETQDNLGNTDSRFHLLQGSLSTASRGIAPLQSLAMSRKALDTRITRALSPALTLLNTFKFTESLQNSLVVLSTKLSSEKPHHVRRLQRLLEYTECVDQLNEGLNNISDEVEVVIMKLQEVVEFISRTKAADQYREARLREALGTLKGLYEIEVDEMRFQGLLDQALVHVQDEFEGLLLRIKHRNFGDLVHQHGDDFRELGSELEIQVLRKISTTLAANDCLDICIDIYVKARYRRAAKALMKLNPDYLRTYTPEGIDEMEWETLETAITLWIQHLEVAVKKVLVAEKKLCERVLGDFMEGLIWPECFIKISDKIMAVFFRFGEGVARSNKEPQKLFKLLDMFESLEKLKPDMSQIFEGESGVDICTRFRELEKLIIDASSKVFLELGLQIEGNIDGLPPPQDGSVPKLVRYAINYLKYLTTVNYRTSMAKVLRTQQTWKDSSSSSNDMSSDEGLLKHAISNVMDALQRNIEAKRLCCRDKVLVHVFTMNTYWYIYMRTKNTELGEVLGEKFMKEGYKAVAEESAYLYQKQAWGGLVRVLDGDDVREEGKGSVGRVVSEKIEAFFKGLNEVCERHVRGVYSIPDVDLREQMREATVRLVVPVYAEFLEGYSGLLQRKGYPSVERVNGLVGKAFDGGKLKGRGSASSDWNVARNSGSLERDVVRSRNDGGGDV*







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