SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G44910 | AT | Annotation by Michelle Graham. TAIR10: pre-mRNA-processing protein 40A | chr1:16975930-16982818 FORWARD LENGTH=958 | SoyBase | E_val: 0 | ISS |
| GO:0008380 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA splicing | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0016592 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mediator complex | SoyBase | N/A | ISS |
| GO:0070063 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA polymerase binding | SoyBase | N/A | ISS |
| KOG0152 | KOG | Spliceosomal protein FBP11/Splicing factor PRP40 | JGI | ISS | |
| PTHR11864 | Panther | HUNTINGTIN-INTERACTING PROTEIN-RELATED | JGI | ISS | |
| PF00397 | PFAM | WW domain | JGI | ISS | |
| PF01846 | PFAM | FF domain | JGI | ISS | |
| UniRef100_B9R6W2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9R6W2_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233E4E2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233E4E2 related cluster n=1 Tax=unknown RepID=UPI000233E4E2 | SoyBase | E_val: 0 | ISS |
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Glyma17g35120 not represented in the dataset |
Glyma17g35120 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma14g10071 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g233000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g35120.1 sequence type=CDS gene model=Glyma17g35120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCAATAATTCTCAACCCTCCAGCATGCAGTTTCGGCCAGTCATTCAAGCTCAGCAAGGGCAACCATTTGTTCCAATGAATTCACAACAATTTGGACCTGCAGGACATGCTATTCCTTCTTCAAATGCGGGAATGCCTGTCATTCAAGGTCAGCAATTGCAGTATTCTCAACCAATGCAGCAGTTGACTCCAAGACCAATGCAGCCTGGTCATCCTGTTCCTTCATCACAAGCTATACCTATGCAATATATTCAGACAAACCGGCCACTGACATCCATTCCAACACATTCACAGCAAACTGTTCCCCCTTTTAGCAATCATATGCCTGGCTTGGCTGTTTCAGTAGCAGCTCCTCATTCTTCATATTTCACACTATCTTATGGTCAGCAGCAAGATAATGCAAACGCATTGGCTCAATACCAGCATCCACCTCAAATGTTTGCTTCTCCTGCTGGTCAATCTTGGCCATCCTCTGCATCTCAGAGTGTTGCGGCTGTTACATCTGTGCAGTCGGCTGGGGTGCAATCATCTGGTGCTGCATCAACTGATACGGTGACTAATGCTACTAACCAGCAATCCTTATCTGATTGGCAAGAGCACACTTCTGCTGATGGGAGAAGATATTATTACAACAAGAGGACAAGGCAATCAAGTTGGGAAAAACCTTTAGAATTGATGTCACCTATAGAGAGAGCTGATGCATCAACTGTTTGGAAAGAATTCACTTCAGAAGGAAGAAAGTATTATTACAACAAGGTTACTCAGCAATCAACGTGGTCAATACCAGAGGAACTTAAGTTGGCTCGTGAGCAGGCACAGAAAGCTGCAAACCAGGGAATGCAGTCAGAAACAAATGATACATCCAATGCTGCAGTCTCCTCCACAGCAACACCAACACCAACACCAACAGCAGTTAATGCAGCTAGCTTGAACACTTCCTTGACATCAAATCATTCAAATGGGCTTGCTTCCAGCCCATCTTCTGTCACACCAATTGCAGCAACCGATTCTCAACAGTCGGTTTCTGGATTATCTGGGTCCTCTGTTTCTCACTCTATAGTTACCCCAAGCACCACAGGAGTAGAACCAAGCACTGTGGTAACTACGAGTGCTGCACCTACAATAGTTGCAGGAAGCTCTGGACTAGCTGAGAATTCACCTCAACAATCCAAAATGCCACCCCTTGTTGAAAATCAAGCATCTCAAGATTTTGCTTCTGTAAATGGATCTTCTCTTCAAGATATCGAGGAAGCCAAAAGATCATTGCCTGTGGTTGGAAAAAATAATGTTGTTCCACCTGAAGAGAAAACCAATGACGATGAAACCTTGGTATATGCAAATAAACTGGAAGCAAAACTTGCATTTAAAGCTCTTTTGGAATCTGTGAATGTTCAGTCTGATTGGACATGGGAACAGGCAATGAGAGAAATCATCAATGACAAAAGATATAATGCCCTAAAAACACTTGGTGAGCGAAAACAGGCTTTTAATGAGTATTTGGGTCAAAGGAAGAAGCTGGAGGCTGAAGAGAGGCGCATGAAGCAGAAAAGAGCCCGTGAAGAATTCACAAAAATGTTGGAAGAGTGCAAGGAACTTACATCATCCATGAGGTGGAGCAAAGCTATTAGTATGTTTGAAAATGATGAACGATTCAATGCTGTTGAAAGACTAAGGGACCGAGAAGATTTATTTGAAAGCTACATGGTGGAACTTGAGAGGAAGGAAAAGGAAAATGCTGCAGAGGAACACCGCCGGAATATAGCAGAATATAGAAAATTTCTGGAGTCCTGTGACTATGTGAAGGCGAATAGTCATTGGCGAAAAATCCAAGATCGGTTAGAGGATGATGATAGATACTTGCGACTTGAAAAAATTGACTGCTTGCTAGTTTTCCAGGACTATATTCGGGACTTGGAGAAAGAAGAAGAGGAACAAAAAAGAATACAGAAGGATCAAATCCGTCGGGGTGAAAGGAAAAACCGTGATGCATTTCGCAAGTTGCTTGAAGAACATGTTGCTGCTGGAATTCTTACTGCTAAAACTCAATGGCATGAATATTGCTTGAAGGTCAGGGATTTACCTCAATATCAAGCTGTTGCGTCAAATACATCTGGTTCCACTCCAAAAGATTTGTTTGAGGATGCTGCAGAGGATCTTGAAAAACAGTATCATGAAGACAAGACGCTCATAAAAGATACAATTAAGTCAGGCAAGATCACTGTAGTGACTACATCAGTATTTGAAGAGTTTAAGGTTGCTGTCTTGGAAGAAGCTGCATGCCAAACAATATCCGAGATCAATTTGAAGCTTATATTCGAAGAGTTGTTAGAGAGAGCCAAGGAGAAGGAGGAGAAAGAAGCCAAGAAGCGCCAACGCCTTGCTGATGACTTTACTAACCTGTTATATACATTCAAGGATATTACTGCTTCCTCAAAATGGGAGGATTGCAAGTCTCTTTTTGAGGAGGCTCAAGAGTACAGGTCAATTGGAGACGAAAGCTATAGTAGAGAAATTTTTGAGGAATACATCACATACTTGAAGGAAAAAGCTAAAGAGAAGGAACGCAAGCGTGAAGAGGAAAAGGCTAAAAAGGAGAAAGAAAGAGAAGAGAAAGAGAAACGGAAGGAGAAGGAGAAAAAAGAAAAAGATAGAGAACGTGAAAAAGATAAGTCTAAGGAACGTCATAGGAAGGATGAAACAGATAGTGATAATCAAGATATGACTGATGGCCATGGTTACAAAGAGGAGAAGAAAAAAGAAAAGGATAAGGAAAGGAAACATCGGAAAAGGCATCAGAGCAGTATAGATGATGTGGATTCTGAAAAGGAAGAGAAGGAAGAATCTAAAAAATCACGAAGGCATGGCAGTGAACGCAAGAAGTCTCGGAAGCAAGCAGACTCTCCTGAATCAGACAACGAAAACCGGCATAGAAGACACAAGAGGGAGCACTGGGATGGTTCAAGGAAAACTGGGGGGCATGAGGAACTTGAAGACGGGGAGCTCGGGGATGATGTTGAGAACTAG
>Glyma17g35120.1 sequence type=predicted peptide gene model=Glyma17g35120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MANNSQPSSMQFRPVIQAQQGQPFVPMNSQQFGPAGHAIPSSNAGMPVIQGQQLQYSQPMQQLTPRPMQPGHPVPSSQAIPMQYIQTNRPLTSIPTHSQQTVPPFSNHMPGLAVSVAAPHSSYFTLSYGQQQDNANALAQYQHPPQMFASPAGQSWPSSASQSVAAVTSVQSAGVQSSGAASTDTVTNATNQQSLSDWQEHTSADGRRYYYNKRTRQSSWEKPLELMSPIERADASTVWKEFTSEGRKYYYNKVTQQSTWSIPEELKLAREQAQKAANQGMQSETNDTSNAAVSSTATPTPTPTAVNAASLNTSLTSNHSNGLASSPSSVTPIAATDSQQSVSGLSGSSVSHSIVTPSTTGVEPSTVVTTSAAPTIVAGSSGLAENSPQQSKMPPLVENQASQDFASVNGSSLQDIEEAKRSLPVVGKNNVVPPEEKTNDDETLVYANKLEAKLAFKALLESVNVQSDWTWEQAMREIINDKRYNALKTLGERKQAFNEYLGQRKKLEAEERRMKQKRAREEFTKMLEECKELTSSMRWSKAISMFENDERFNAVERLRDREDLFESYMVELERKEKENAAEEHRRNIAEYRKFLESCDYVKANSHWRKIQDRLEDDDRYLRLEKIDCLLVFQDYIRDLEKEEEEQKRIQKDQIRRGERKNRDAFRKLLEEHVAAGILTAKTQWHEYCLKVRDLPQYQAVASNTSGSTPKDLFEDAAEDLEKQYHEDKTLIKDTIKSGKITVVTTSVFEEFKVAVLEEAACQTISEINLKLIFEELLERAKEKEEKEAKKRQRLADDFTNLLYTFKDITASSKWEDCKSLFEEAQEYRSIGDESYSREIFEEYITYLKEKAKEKERKREEEKAKKEKEREEKEKRKEKEKKEKDREREKDKSKERHRKDETDSDNQDMTDGHGYKEEKKKEKDKERKHRKRHQSSIDDVDSEKEEKEESKKSRRHGSERKKSRKQADSPESDNENRHRRHKREHWDGSRKTGGHEELEDGELGDDVEN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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