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Report for Sequence Feature Glyma17g35090

Feature Type:gene_model
Chromosome:Gm17
Start:39077361
stop:39082558
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g35090
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G22840AT Annotation by Michelle Graham. TAIR10: growth-regulating factor 1 | chr2:9728841-9731141 FORWARD LENGTH=530 SoyBaseE_val: 6.00E-100ISS
GO:0009624GO-bp Annotation by Michelle Graham. GO Biological Process: response to nematode SoyBaseN/AISS
GO:0009737GO-bp Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus SoyBaseN/AISS
GO:0009793GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy SoyBaseN/AISS
GO:0009845GO-bp Annotation by Michelle Graham. GO Biological Process: seed germination SoyBaseN/AISS
GO:0010162GO-bp Annotation by Michelle Graham. GO Biological Process: seed dormancy process SoyBaseN/AISS
GO:0048364GO-bp Annotation by Michelle Graham. GO Biological Process: root development SoyBaseN/AISS
GO:0048366GO-bp Annotation by Michelle Graham. GO Biological Process: leaf development SoyBaseN/AISS
GO:0061062GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of nematode larval development SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016818GO-mf Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides SoyBaseN/AISS
PF08879PFAM WRC JGI ISS
PF08880PFAM QLQ JGI ISS
UniRef100_D9ZIZ8UniRef Annotation by Michelle Graham. Most informative UniRef hit: GRF domain class transcription factor n=1 Tax=Malus x domestica RepID=D9ZIZ8_MALDO SoyBaseE_val: 1.00E-149ISS
UniRef100_UPI000233E4E0UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233E4E0 related cluster n=1 Tax=unknown RepID=UPI000233E4E0 SoyBaseE_val: 0ISS

Expression Patterns of Glyma17g35090
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g35090
ParalogEvidenceComments
Glyma14g10100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g35090 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g232600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g35090
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma17g35090
>Glyma17g35090.2   sequence type=CDS   gene model=Glyma17g35090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCTTGGGGTGGTGGGTTTGGAGGGGGTGGTGGGTTCAGAAAGTGGTTGTGTGTTTGGTTCTTCTCTTGTTTCAGATCCTGAGACAAAGCACAAGTGGTACGGATCTGGTTTGCTCAAGCAAGAGAGATCTGCCATAGCTACTGAAGATGATGAGTGGAGAATTTCCAAAGTTGCTAAAACTGATCATGACATGTCTTCAGCCTCCAAAGCAATGCTCTTTCAGCAAAGAAACAACTCTTTGTTGAGATCTAATAATGCAACTCTCTTCTCTGATGGTCATCACCAATCACAAATGTTGAGCTTCTCTTCTCCAAAGTCAGATTCTTTGTTGATAGATAAGGCTTCCTCAAATGCCACATTGCCTTTTTCTTCCCACCAATTGTCTAGCTACACCAGAAATACAGGTTACAATTCAGGAAGCATAAGCATGCATGGGGCTTTGGCTAGTGTGAGAGGGCCATTCACTCCATCACAGTGGATGGAGCTTGAACACCAAGCCTTGATCTACAAGTACATCACAGCAAATGTTCCTGTGCCAACTCATCTTCTCATTCCCATCAGAAAAGCACTTGATTCTGTTGGCTTCTGCAACTTCTCAGCCGGACTCCTCAGACCCAACTCATTGGGATGGGGAGGTTTCCATCTAGGATTCTCGAACAATACAGACCCTGAGCCAGGGAGGTGTAGGAGAACAGATGGAAAGAAATGGCGATGTTCAAGAGATGCCGTAGTAGATCAGAAGTATTGCGAGCGGCACATGAACCGAGGACGCCATCGTTCAAGAAAGCCTGTGGAAGGCCAATCAGGCCATGCCCTCACCACCACCACCAGTAATACACCTAATGCTTCCTCCAACTCTGTGGTGCCTGGCAACAACAACAACACCTTTGCACACAACAATGTGCACCACCCTATTCCTCCTCATTCCTCTCCGGTCAACACCATCACTAGGATGTTTACAAGCAACAAAGAGAATAATAACAGTACCAGTGAGAGGATGCAGGACCCTGCACTTCCCATGCTTCCTCCCACTCTTGAGCTGAAACCAAAGGAGAACAATCCTTTCATGATTCATAAACACCAAATCCCATCTGATGAATACTCAAGTAGGAACAACAATGAGTTTGGGCTTGTCACTTCTGATTCTTTGCTTAACCCCTCAGAGAAAAGAAGCTTTACTTCTTCACAAAAGAATGATTCTTCTGAGTCCCAACAACAACATTCCCTCAGGCACTTCATTGATGACTCTCCCAAACCACAGTCTAATCATCATCATCGTTCGTCGTCTATATGGCCTGAACTTGACAACATGCAGTCAGACAGGACTCAGTTATCAATCTCCATACCAATATCTTCCTCAGATCACTTCATGTCATTCACTACTTCCTTGCCCTCGAACGAGAAACTCACGTTGTCACCACTTAGGCTTTCAAGGGAGTTAGACCCCATTCAAATGGGGTTGGGAGTGGGAAGTGCCCCCAATGAAGCAAACACTAGGCAAGCCAATTGGATTCCAATCACTTGGGAGAGTTCAATGGGTGGTCCTCTTGGAGAGGTTTTGAACCTTAGTAACAATAACAACAGCAATGCTAGTGATCAATGTGGCAAGAACAACAACAACACTTCAGCTCTCAACCTCATGAAAGATGGATGGGACAATAATCCTCCATCAGGGTCATCCCCAACTGGGGTGCTTCAAAAATCTGCATTTGGATCACTTTCCAATAGCAGTGCTGGGAGCAGTCCAAGGGGGGCAGAGAACAACAAAGAAGGTGCCACCTTGTGCAATGCCTTGTAA
Predicted protein sequences of Glyma17g35090
>Glyma17g35090.2   sequence type=predicted peptide   gene model=Glyma17g35090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDLGVVGLEGVVGSESGCVFGSSLVSDPETKHKWYGSGLLKQERSAIATEDDEWRISKVAKTDHDMSSASKAMLFQQRNNSLLRSNNATLFSDGHHQSQMLSFSSPKSDSLLIDKASSNATLPFSSHQLSSYTRNTGYNSGSISMHGALASVRGPFTPSQWMELEHQALIYKYITANVPVPTHLLIPIRKALDSVGFCNFSAGLLRPNSLGWGGFHLGFSNNTDPEPGRCRRTDGKKWRCSRDAVVDQKYCERHMNRGRHRSRKPVEGQSGHALTTTTSNTPNASSNSVVPGNNNNTFAHNNVHHPIPPHSSPVNTITRMFTSNKENNNSTSERMQDPALPMLPPTLELKPKENNPFMIHKHQIPSDEYSSRNNNEFGLVTSDSLLNPSEKRSFTSSQKNDSSESQQQHSLRHFIDDSPKPQSNHHHRSSSIWPELDNMQSDRTQLSISIPISSSDHFMSFTTSLPSNEKLTLSPLRLSRELDPIQMGLGVGSAPNEANTRQANWIPITWESSMGGPLGEVLNLSNNNNSNASDQCGKNNNNTSALNLMKDGWDNNPPSGSSPTGVLQKSAFGSLSNSSAGSSPRGAENNKEGATLCNAL*






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