Glyma17g34900 - SoyBase

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Report for Sequence Feature Glyma17g34900

Feature Type:	gene_model
Chromosome:	Gm17
Start:	38877495
stop:	38884064
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g34900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G32940	AT	Annotation by Michelle Graham. TAIR10: gamma vacuolar processing enzyme \| chr4:15900557-15903161 REVERSE LENGTH=494	SoyBase	E_val: 0	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0006624	GO-bp	Annotation by Michelle Graham. GO Biological Process: vacuolar protein processing	SoyBase	N/A	ISS
GO:0048193	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport	SoyBase	N/A	ISS
GO:0000323	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: lytic vacuole	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0004197	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cysteine-type endopeptidase activity	SoyBase	N/A	ISS
KOG1348	KOG	Asparaginyl peptidases	JGI		ISS
PTHR12000	Panther	HEMOGLOBINASE FAMILY MEMBER	JGI		ISS
PTHR12000:SF2	Panther	HEMOGLOBINASE	JGI		ISS
PF01650	PFAM	Peptidase C13 family	JGI		ISS
UniRef100_I1MXD5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MXD5_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9AUD9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Asparaginyl endopeptidase n=1 Tax=Vigna radiata var. radiata RepID=Q9AUD9_VIGRR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g34900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g34900

Paralog	Evidence	Comments
Glyma14g10620	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g34900 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g230700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g34900

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g34900

Limit To All Plant Sequences

>Glyma17g34900.2   sequence type=transcript   gene model=Glyma17g34900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTAATCCACTTCCCCCTTCCCAACTCATTCACTCTACACTCTCCATATGGCCACTCTTCTTCTTCCCACGCTCCTCCTTCTCATACCCTTCGCCACCCTCGTCTCCGCCCGCCCTCACCTCGCCGGAGACTTTCTCCGACTGCCCTCCGAAACCGATAACGATGACAACGTCCAGGGCACCCGCTGGGCCGTCCTCCTCGCCGGTTCCAATGGCTACTGGAATTACAGACATCAGGCTGATGTTTGTCACGCCTATCAAATACTAAGGAAAGGTGGCCTGAAAGAAGAAAATATTATTGTTTTTATGTATGATGACATTGCATTCAATGGGGAAAACCCAAGGCCTGGAGTCATCATTAACAAACCAGATGGAGGTGATGTTTATGAAGGAGTTCCAAAGGATTACACCGGCGAAGATGTTACTGTTGGTAACTTTTTTGCTGCTTTACTTGGAAACAAGTCGGCACTTACTGGTGGCAGTGGGAAGGTTGTGGACAGTGGACCTGATGATCATATATTTGTATACTATACTGACCATGGAGGTCCAGGGGTGCTCGGGATGCCTGCTGGTCCTTACTTATATGCGGATGATCTGATTGAAGTCTTGAAGAAAAAACATGCTTCTGGAACGTATAAAAACCTAGTATTTTATCTGGAGGCATGTGAATCTGGGAGTATCTTTGAAGGTCTTCTTCCCGAAGATATCAATATTTATGCAACCACAGCTTCCAATGCAGAAGAAAGTAGTTGGGGAACATATTGCCCTGGGGAGTATCCTAGTCCTCCCCCAGAATATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAGTGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTGGTTAAAGAGAGGACTATATCTGGAGATTCATACTATGGCTCTCACGTGATGCAGTATGGTGATGTACGGCTTAGCAGTGATGTTCTCTTCCATTATTTGGGTACAGATCCTGCTAATGATAATTTCACTTTTGTGGACGAAAACTCCTTATGGTCACCTTCAAAACCAGTCAACCAACGTGATGCTGATCTCATCCATTTTTGGGATAAGTTCCGCAAAGCTCCTGAGGGTTCTCTCAGGAAAAATGCAGCTCAGAAACAAGTTTTGGAAGCAATGTCTCATAGAATGCATGTAGACAACAGTGTAAAACTTATTGGGAAGCTTTTATTTGGTATTGAAAAGGGTCCAGAAGTACTCAACGCTGTTAGACCGGCAGGATCGGCACTTGTTGATGATTGGCACTGCCTTAAAACCATGGTATCATTTTTGTTCTGAAGCCATATGATAGATAGACTTTTCGTATAAAAATGAGCTTAAGATCTATCTCTGAACAGTGTAAAATTTTTTACACTGTCAATTGATAAAAAGTTATCTCAAAGATGACTTAAAAATAATTATTATAAAAACTTTTACACTGTGAATTGATAAAAAAAATTATGTCAAAGATGACTTTAACATAATTATTATATTATAAAAGTCAATAAAATTATTGTATATGATAAT

Coding sequences of Glyma17g34900

Limit To All Plant Sequences

>Glyma17g34900.1   sequence type=CDS   gene model=Glyma17g34900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCACTCTTCTTCTTCCCACGCTCCTCCTTCTCATACCCTTCGCCACCCTCGTCTCCGCCCGCCCTCACCTCGCCGGAGACTTTCTCCGACTGCCCTCCGAAACCGATAACGATGACAACGTCCAGGGCACCCGCTGGGCCGTCCTCCTCGCCGGTTCCAATGGCTACTGGAATTACAGACATCAGGCTGATGTTTGTCACGCCTATCAAATACTAAGGAAAGGTGGCCTGAAAGAAGAAAATATTATTGTTTTTATGTATGATGACATTGCATTCAATGGGGAAAACCCAAGGCCTGGAGTCATCATTAACAAACCAGATGGAGGTGATGTTTATGAAGGAGTTCCAAAGGATTACACCGGCGAAGATGTTACTGTTGGTAACTTTTTTGCTGCTTTACTTGGAAACAAGTCGGCACTTACTGGTGGCAGTGGGAAGGTTGTGGACAGTGGACCTGATGATCATATATTTGTATACTATACTGACCATGGAGGTCCAGGGGTGCTCGGGATGCCTGCTGGTCCTTACTTATATGCGGATGATCTGATTGAAGTCTTGAAGAAAAAACATGCTTCTGGAACGTATAAAAACCTAGTATTTTATCTGGAGGCATGTGAATCTGGGAGTATCTTTGAAGGTCTTCTTCCCGAAGATATCAATATTTATGCAACCACAGCTTCCAATGCAGAAGAAAGTAGTTGGGGAACATATTGCCCTGGGGAGTATCCTAGTCCTCCCCCAGAATATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAGTGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTGGTTAAAGAGAGGACTATATCTGGAGATTCATACTATGGCTCTCACGTGATGCAGTATGGTGATGTACGGCTTAGCAGTGATGTTCTCTTCCATTATTTGGGTACAGATCCTGCTAATGATAATTTCACTTTTGTGGACGAAAACTCCTTATGGTCACCTTCAAAACCAGTCAACCAACGTGATGCTGATCTCATCCATTTTTGGGATAAGTTCCGCAAAGCTCCTGAGGGTTCTCTCAGGAAAAATGCAGCTCAGAAACAAGTTTTGGAAGCAATGTCTCATAGAATGCATGTAGACAACAGTGTAAAACTTATTGGGAAGCTTTTATTTGGTATTGAAAAGGGTCCAGAAGTACTCAACGCTGTTAGACCGGCAGGATCGGCACTTGTTGATGATTGGCACTGCCTTAAAACCATGGTGAGGACTTTTGAGACACATTGTGGATCCTTGTCTCAGTATGGCATGAAACATATGAGGTCCTTTGCAAACATCTGCAATGTAGGGATAAAGAATGAGCAAATGGCTGAGGCCTCTGCACAAGCTTGTGTCTCTATTCCTTCCAATCCTTGGAGTTCTCTGCAAAGGGGTTTCAGTGCATAA

>Glyma17g34900.2   sequence type=CDS   gene model=Glyma17g34900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCACTCTTCTTCTTCCCACGCTCCTCCTTCTCATACCCTTCGCCACCCTCGTCTCCGCCCGCCCTCACCTCGCCGGAGACTTTCTCCGACTGCCCTCCGAAACCGATAACGATGACAACGTCCAGGGCACCCGCTGGGCCGTCCTCCTCGCCGGTTCCAATGGCTACTGGAATTACAGACATCAGGCTGATGTTTGTCACGCCTATCAAATACTAAGGAAAGGTGGCCTGAAAGAAGAAAATATTATTGTTTTTATGTATGATGACATTGCATTCAATGGGGAAAACCCAAGGCCTGGAGTCATCATTAACAAACCAGATGGAGGTGATGTTTATGAAGGAGTTCCAAAGGATTACACCGGCGAAGATGTTACTGTTGGTAACTTTTTTGCTGCTTTACTTGGAAACAAGTCGGCACTTACTGGTGGCAGTGGGAAGGTTGTGGACAGTGGACCTGATGATCATATATTTGTATACTATACTGACCATGGAGGTCCAGGGGTGCTCGGGATGCCTGCTGGTCCTTACTTATATGCGGATGATCTGATTGAAGTCTTGAAGAAAAAACATGCTTCTGGAACGTATAAAAACCTAGTATTTTATCTGGAGGCATGTGAATCTGGGAGTATCTTTGAAGGTCTTCTTCCCGAAGATATCAATATTTATGCAACCACAGCTTCCAATGCAGAAGAAAGTAGTTGGGGAACATATTGCCCTGGGGAGTATCCTAGTCCTCCCCCAGAATATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAGTGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTGGTTAAAGAGAGGACTATATCTGGAGATTCATACTATGGCTCTCACGTGATGCAGTATGGTGATGTACGGCTTAGCAGTGATGTTCTCTTCCATTATTTGGGTACAGATCCTGCTAATGATAATTTCACTTTTGTGGACGAAAACTCCTTATGGTCACCTTCAAAACCAGTCAACCAACGTGATGCTGATCTCATCCATTTTTGGGATAAGTTCCGCAAAGCTCCTGAGGGTTCTCTCAGGAAAAATGCAGCTCAGAAACAAGTTTTGGAAGCAATGTCTCATAGAATGCATGTAGACAACAGTGTAAAACTTATTGGGAAGCTTTTATTTGGTATTGAAAAGGGTCCAGAAGTACTCAACGCTGTTAGACCGGCAGGATCGGCACTTGTTGATGATTGGCACTGCCTTAAAACCATGGTATCATTTTTGTTCTGA

Predicted protein sequences of Glyma17g34900

Limit To All Plant Sequences

>Glyma17g34900.1   sequence type=predicted peptide   gene model=Glyma17g34900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATLLLPTLLLLIPFATLVSARPHLAGDFLRLPSETDNDDNVQGTRWAVLLAGSNGYWNYRHQADVCHAYQILRKGGLKEENIIVFMYDDIAFNGENPRPGVIINKPDGGDVYEGVPKDYTGEDVTVGNFFAALLGNKSALTGGSGKVVDSGPDDHIFVYYTDHGGPGVLGMPAGPYLYADDLIEVLKKKHASGTYKNLVFYLEACESGSIFEGLLPEDINIYATTASNAEESSWGTYCPGEYPSPPPEYSTCLGDLYSVAWMEDSDRHNLRTETLHQQYKLVKERTISGDSYYGSHVMQYGDVRLSSDVLFHYLGTDPANDNFTFVDENSLWSPSKPVNQRDADLIHFWDKFRKAPEGSLRKNAAQKQVLEAMSHRMHVDNSVKLIGKLLFGIEKGPEVLNAVRPAGSALVDDWHCLKTMVRTFETHCGSLSQYGMKHMRSFANICNVGIKNEQMAEASAQACVSIPSNPWSSLQRGFSA*

>Glyma17g34900.2   sequence type=predicted peptide   gene model=Glyma17g34900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATLLLPTLLLLIPFATLVSARPHLAGDFLRLPSETDNDDNVQGTRWAVLLAGSNGYWNYRHQADVCHAYQILRKGGLKEENIIVFMYDDIAFNGENPRPGVIINKPDGGDVYEGVPKDYTGEDVTVGNFFAALLGNKSALTGGSGKVVDSGPDDHIFVYYTDHGGPGVLGMPAGPYLYADDLIEVLKKKHASGTYKNLVFYLEACESGSIFEGLLPEDINIYATTASNAEESSWGTYCPGEYPSPPPEYSTCLGDLYSVAWMEDSDRHNLRTETLHQQYKLVKERTISGDSYYGSHVMQYGDVRLSSDVLFHYLGTDPANDNFTFVDENSLWSPSKPVNQRDADLIHFWDKFRKAPEGSLRKNAAQKQVLEAMSHRMHVDNSVKLIGKLLFGIEKGPEVLNAVRPAGSALVDDWHCLKTMVSFLF*

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