Glyma17g34880 - SoyBase

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Report for Sequence Feature Glyma17g34880

Feature Type:	gene_model
Chromosome:	Gm17
Start:	38858925
stop:	38863295
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g34880

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G36250	AT	Annotation by Michelle Graham. TAIR10: Protein phosphatase 2C family protein \| chr5:14282590-14284376 FORWARD LENGTH=448	SoyBase	E_val: 3.00E-96	ISS
GO:0006470	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein dephosphorylation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004721	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphoprotein phosphatase activity	SoyBase	N/A	ISS
GO:0004722	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine phosphatase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG0698	KOG	Serine/threonine protein phosphatase	JGI		ISS
PTHR13832	Panther	PROTEIN PHOSPHATASE 2C	JGI		ISS
PTHR13832:SF94	Panther	PROTEIN PHOSPHATASE 2C DELTA	JGI		ISS
PF00481	PFAM	Protein phosphatase 2C	JGI		ISS
UniRef100_B9RRV1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein phosphatase-2c, putative n=1 Tax=Ricinus communis RepID=B9RRV1_RICCO	SoyBase	E_val: 8.00E-135	ISS
UniRef100_I1MXD3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MXD3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g34880

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g34880

Paralog	Evidence	Comments
Glyma14g10646	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g34880 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g230600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g34880

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g34880

Limit To All Plant Sequences

>Glyma17g34880.1   sequence type=CDS   gene model=Glyma17g34880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTATCTGCATATCCGTTGCAGAAGAAGCTCATGATGATGATAATGTGACAATATTTGAAGCAAGAAAGGTTCTAAATGGGAGTCAGAGACTTTGCTCTGTTTACTCCAAACAGGGTAGCAAAGGACTCAACCAAGATGCTGCCTCTGTTCATGAGGGTTATGGGATGGAGGATGGAACATTTTGTGGAGTTTATGATGGGCATGGAGGGAATGGACACAAAGTGAGCAAAATAGTAAGCAGTCGTTTATCTTCCCTCATACTGGACCAAAAGAATGTTCTTGAAAGGATTGATGAGATAGAAAATGGTTACAACAACACCACAAAAAAGCATGTTAACTCAGTGAAAGAGGAATTGCCTGCAAGGAACTTTCAGAAATGGAAAGAAGCAATTGTTAGTGCTTTCAAGGTGATGGACAAAGAGGTGAAGCTTCAAAAGAATCTAGACTGCTTTAGCAGTGGAACCACAGCTGTAGTTATCATAAAACAGGGTGAAGGTCTTGTCATAGCTAATCTGGGTGACTCAAGAGCAGTGTTGGGAACAATCTATGATGAAAAACTCGTAGCCATTCAATTGACCACTGATTTGAAACCTGAATTACCTCGAGAAGCAGAAAGAATAAGGAGGTGCAATGGTTGTGTGTGTGGGTCGAATGAAGAACCAGATATCCAGAGAGTGTGGATGCCCAACAATGAGAATTCACCTGGCCTAGCCATGTCTCGATCTTTGGGAGATTTCCTGCTCAAAGATCACGGTGTCATTGCCATCCCTGATGTTTCCTATCACCCTCTAACATCAACTGACCAATTCATTGTTCTTGCAAGTGATGGGGTGTGGGATGTACTAAGCAACAATGAGGTTGCATCAATTGTGTGGAGTGTAGACAGTGAAGAGGCAGCAGCAATGGCAGTAGTGGAAGCAGCCACTGCTGCATGGAATGAGAAGTATCCTTCCTATATGGCAGATGACTGCACCGTGGTTTGCCTCTTCCTGCACAAGAAATCACAACTTACTAACTTAAGTGCCCCTTAA

Predicted protein sequences of Glyma17g34880

Limit To All Plant Sequences

>Glyma17g34880.1   sequence type=predicted peptide   gene model=Glyma17g34880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGICISVAEEAHDDDNVTIFEARKVLNGSQRLCSVYSKQGSKGLNQDAASVHEGYGMEDGTFCGVYDGHGGNGHKVSKIVSSRLSSLILDQKNVLERIDEIENGYNNTTKKHVNSVKEELPARNFQKWKEAIVSAFKVMDKEVKLQKNLDCFSSGTTAVVIIKQGEGLVIANLGDSRAVLGTIYDEKLVAIQLTTDLKPELPREAERIRRCNGCVCGSNEEPDIQRVWMPNNENSPGLAMSRSLGDFLLKDHGVIAIPDVSYHPLTSTDQFIVLASDGVWDVLSNNEVASIVWSVDSEEAAAMAVVEAATAAWNEKYPSYMADDCTVVCLFLHKKSQLTNLSAP*

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