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Integrating Genetics and Genomics to Advance Soybean Research




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Report for Sequence Feature Glyma17g34820

Feature Type:gene_model
Chromosome:Gm17
Start:38807324
stop:38811893
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G11790AT Annotation by Michelle Graham. TAIR10: N-MYC downregulated-like 2 | chr5:3799682-3802496 FORWARD LENGTH=344 SoyBaseE_val: 0ISS
GO:0030154GO-bp Annotation by Michelle Graham. GO Biological Process: cell differentiation SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
KOG2931 KOG Differentiation-related gene 1 protein (NDR1 protein), related proteins JGI ISS
PTHR11034Panther N-MYC DOWNSTREAM REGULATED JGI ISS
PTHR11034:SF3Panther N-MYC DOWNSTREAM REGULATED-RELATED JGI ISS
PF03096PFAM Ndr family JGI ISS
UniRef100_G7IB94UniRef Annotation by Michelle Graham. Most informative UniRef hit: Pollen-specific protein SF21 n=1 Tax=Medicago truncatula RepID=G7IB94_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1MXC8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MXC8_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g34820 not represented in the dataset

Glyma17g34820 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma14g10720 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g230100 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma17g34820.1   sequence type=CDS   gene model=Glyma17g34820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGATTCAACCTCAAGCGATTCACTCTCACTCGACATCGATTCCTTTTCTCCTTCACCTCAGGAACATATCATCAGAACACGTCATGGTTCTGTATCTGTTGCTGTATATGGAGACCAGGATAAGCCAGCTCTAATCACATATCCGGATTTGGCTTTAAATTATGTCTCCTGCTTTCAGGGGTTATTATTTTGTCCCGAGGCATATTACCTTCTGCTCCACAATTTCTGCATTTATCATATTAGTCCACCTGGGCATGAGTTGGGAGCTGCTGCAATCGATCAAGATCACCCAATTCTTTCTGTAGATGATTTAGCTGATCAAATAGCCGAGGTTCTCAACTTTTTTGGTCTTAGTGCAGTCATGTGTATGGGAGTAACTGCTGGGGCTTACATTCTTACCTTATTTGCTATGAAGTATAGACAACGTGTTCTTGGTTTGATACTTGTTTCTCCTCTATGTAAAGAACCGTCTTGGACTGAATGGTTGTACAACAAGGTCATGTCAAATTTACTATACTTTTATGGCATGTGTGGGGTGGTTAAGGAAATATTGCTGAAGCGGTACTTTAGCAAGGAAATTCGAGGTGGCACTCAATTGCCGGAGTCAGATATAGTTAAATCTTGTCGAAGGTTGTTGGATGAGAGGCAGAGTTTGAATGTGTGGCGATTCCTGGAAGCTATTAACGAGAGACCTGACATAAGTGAAGGGTTGAGAAAACTACATTGCCGTTCGCTTATTTTTGTTGGGGATATGTCACCATTTCACTCGGAGGCTGTTCACATGACTTCAAAGTTAGACAGACGATTCAGTGCCTTAGTTGAGGTTCAAGCATGTGGATCAATGGTAACAGAGGAGCAGCCTCATGCCATGTTAATACCAATGGAGTACTTTCTCATGGGATATGGCTTGTACAAGCCATCCAAGTTGAGTGTCAGCCCAAGAAGTCCCTTGAGCCCATCATGCATTTCGCCTGAGCTTTATTCACCAGAGAGCATGGGTTTGAAATTGAAACCCATAAAGACACGAATTTCTCTGGAAATCTAG

>Glyma17g34820.1   sequence type=predicted peptide   gene model=Glyma17g34820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADSTSSDSLSLDIDSFSPSPQEHIIRTRHGSVSVAVYGDQDKPALITYPDLALNYVSCFQGLLFCPEAYYLLLHNFCIYHISPPGHELGAAAIDQDHPILSVDDLADQIAEVLNFFGLSAVMCMGVTAGAYILTLFAMKYRQRVLGLILVSPLCKEPSWTEWLYNKVMSNLLYFYGMCGVVKEILLKRYFSKEIRGGTQLPESDIVKSCRRLLDERQSLNVWRFLEAINERPDISEGLRKLHCRSLIFVGDMSPFHSEAVHMTSKLDRRFSALVEVQACGSMVTEEQPHAMLIPMEYFLMGYGLYKPSKLSVSPRSPLSPSCISPELYSPESMGLKLKPIKTRISLEI*







Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
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