SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G26070 | AT | Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF778) | chr2:11105741-11106607 REVERSE LENGTH=250 | SoyBase | E_val: 1.00E-115 | ISS |
| GO:0009723 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus | SoyBase | N/A | ISS |
| GO:0010105 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of ethylene mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG3150 | KOG | Uncharacterized conserved protein | JGI | ISS | |
| PTHR20921 | Panther | UNCHARACTERIZED | JGI | ISS | |
| PF05608 | PFAM | Protein of unknown function (DUF778) | JGI | ISS | |
| UniRef100_B7FIL3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Transmembrane protein n=1 Tax=Medicago truncatula RepID=B7FIL3_MEDTR | SoyBase | E_val: 3.00E-137 | ISS |
| UniRef100_C6THD5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6THD5_SOYBN | SoyBase | E_val: 7.00E-172 | ISS |
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Glyma17g34740 not represented in the dataset |
Glyma17g34740 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma14g10770 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g229300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g34740.4 sequence type=transcript gene model=Glyma17g34740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AACAACTCCAGAGACATGGTAGGGGCCCACCATGAAAGATAAAAATGAAAAATCAGGGAAGGGTTCATGCACCTTTCCCATTTCCAGTCTCTTGCTTCTGTTCCAAAACAACCAGAGACTCAGATTTTCCCAAATGAAACAAACAATAATTAAAAGCAACATAATAAAAAAAATCCATTGCATCTAATTATTATATTTCCAAAAAGAGAATAGCTTGTGGACTTTGTGAAGCAATATTAATTATGATTTTTATTTTTCCTAAGTGGCTTCACCCCCTGAATAAATCACACGCCATTGCAATGACCCCCAACGACAACTTCAACTTCTCTTCTGCATCTTCAAACACCCTTGTGGCTTTTCTAAGTGTTGTGATTCTTTGTTTCACCTTTTTCTTCAGAGTTGGGATGTCTGGAGTAGTAGTTTGATACAGTGATGCATCTCCACAGATATTTGAGTAAAGCTATATGCCGTGCCCTAGATTTTTACTATGTACTTAAATGCAAGTTATGACGTTGAGCATTCACATTCTACACAAAGAATACAGCATGAGCTGTGGCCTCTAGATCCAATTGATCCAAAGAAGGCAAAGTTTCCATGTTGTTTGGTTTGGAATCCACTTCCTGTGGTGTCATGGTTGGCTCCCTTCATTGGTCATGTTGGCATTTGCAGGGAGGATGGAGTTGTTTTAGATTTTTCAGGATCATATCTTGTGAATGTTGATGATTTTGCATTTGGTCCAGTGGCAAGATACTTGCAACTCGATCATAGACAGTGTTGCTTCCCTCCTAACCTATCTGCGCATACATGCAAGCATGGTTACCTGCATGCTGAGTATGGTACTGCAATCACATGGGACCATGCATTACAGACAAGTTTGCTGTATTTTGAGAACAAAACTCACAACCTTTTCACTTGCAACTGCCACTCGTTTGTCGCGAACTGTCTGAATCGACTGTGTTATGGTGGATCAATGAGTTGGAATATGGTGAATGTAGGAGCTTTGGTACTATTCAAGGGGCACTGGGTTGATTTCAGGTCAATTGTAAGGTCTTTCTTGCCTTTTATTGTGGTTGTTTGCTTAGGTGTTTTTATGGTTGGATGGCCCTTCTTACTTGGGCTACTATCCTTCTCTTTACTCTTAATAGGGTGGTTTATATTGGGTACTTACCTATTTAGAAACTTATTAGAGTGCTAAAATGGTCTGTTGAGTTGAAAGATGGTCATGATTTGTGTTCCCTCTTCACCAAATAACAAGTTTAAATGTTGTTATTTGAACAAGAAATAGTTATCTCTTATGGAAAGTTAATGAAATAACTTTTAAAAGTGTACTTTGAGGCCTCATTAGACCGTGCATTATGCAATTGCATTGCCTTGTTGGTGAAACTGTTCTAGTTGCAGATTCTCTCATGTTTCTTTCAAGCATTGAGATGAAAAGATGGGAAGACGTTTATCAAATAGTATTGTTTTGGGAAATAATGTGAAGAATGTACTCCAATTAAGAATTTGAAAGCAATGAGAACTCATTCAAGATTGAACGGTACACATTGTTTTT
>Glyma17g34740.3 sequence type=CDS gene model=Glyma17g34740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTACTTAAATGCAAGTTATGACGTTGAGCATTCACATTCTACACAAAGAATACAGCATGAGCTGTGGCCTCTAGATCCAATTGATCCAAAGAAGGCAAAGTTTCCATGTTGTTTGGTTTGGAATCCACTTCCTGTGGTGTCATGGTTGGCTCCCTTCATTGGTCATGTTGGCATTTGCAGGGAGGATGGAGTTGTTTTAGATTTTTCAGGATCATATCTTGTGAATGTTGATGATTTTGCATTTGGTCCAGTGGCAAGATACTTGCAACTCGATCATAGACAGTGTTGCTTCCCTCCTAACCTATCTGCGCATACATGCAAGCATGGTTACCTGCATGCTGAGTATGGTACTGCAATCACATGGGACCATGCATTACAGACAAGTTTGCTGTATTTTGAGAACAAAACTCACAACCTTTTCACTTGCAACTGCCACTCGTTTGTCGCGAACTGTCTGAATCGACTGTGTTATGGTGGATCAATGAGTTGGAATATGGTGAATGTAGGAGCTTTGGTACTATTCAAGGGGCACTGGGTTGATTTCAGGTCAATTGTAAGGTCTTTCTTGCCTTTTATTGTGGTTGTTTGCTTAGGTGTTTTTATGGTTGGATGGCCCTTCTTACTTGGGCTACTATCCTTCTCTTTACTCTTAATAGGGTGGTTTATATTGGGTACTTACCTATTTAGAAACTTATTAGAGTGCTAA >Glyma17g34740.4 sequence type=CDS gene model=Glyma17g34740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTACTTAAATGCAAGTTATGACGTTGAGCATTCACATTCTACACAAAGAATACAGCATGAGCTGTGGCCTCTAGATCCAATTGATCCAAAGAAGGCAAAGTTTCCATGTTGTTTGGTTTGGAATCCACTTCCTGTGGTGTCATGGTTGGCTCCCTTCATTGGTCATGTTGGCATTTGCAGGGAGGATGGAGTTGTTTTAGATTTTTCAGGATCATATCTTGTGAATGTTGATGATTTTGCATTTGGTCCAGTGGCAAGATACTTGCAACTCGATCATAGACAGTGTTGCTTCCCTCCTAACCTATCTGCGCATACATGCAAGCATGGTTACCTGCATGCTGAGTATGGTACTGCAATCACATGGGACCATGCATTACAGACAAGTTTGCTGTATTTTGAGAACAAAACTCACAACCTTTTCACTTGCAACTGCCACTCGTTTGTCGCGAACTGTCTGAATCGACTGTGTTATGGTGGATCAATGAGTTGGAATATGGTGAATGTAGGAGCTTTGGTACTATTCAAGGGGCACTGGGTTGATTTCAGGTCAATTGTAAGGTCTTTCTTGCCTTTTATTGTGGTTGTTTGCTTAGGTGTTTTTATGGTTGGATGGCCCTTCTTACTTGGGCTACTATCCTTCTCTTTACTCTTAATAGGGTGGTTTATATTGGGTACTTACCTATTTAGAAACTTATTAGAGTGCTAA
>Glyma17g34740.3 sequence type=predicted peptide gene model=Glyma17g34740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MYLNASYDVEHSHSTQRIQHELWPLDPIDPKKAKFPCCLVWNPLPVVSWLAPFIGHVGICREDGVVLDFSGSYLVNVDDFAFGPVARYLQLDHRQCCFPPNLSAHTCKHGYLHAEYGTAITWDHALQTSLLYFENKTHNLFTCNCHSFVANCLNRLCYGGSMSWNMVNVGALVLFKGHWVDFRSIVRSFLPFIVVVCLGVFMVGWPFLLGLLSFSLLLIGWFILGTYLFRNLLEC* >Glyma17g34740.4 sequence type=predicted peptide gene model=Glyma17g34740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MYLNASYDVEHSHSTQRIQHELWPLDPIDPKKAKFPCCLVWNPLPVVSWLAPFIGHVGICREDGVVLDFSGSYLVNVDDFAFGPVARYLQLDHRQCCFPPNLSAHTCKHGYLHAEYGTAITWDHALQTSLLYFENKTHNLFTCNCHSFVANCLNRLCYGGSMSWNMVNVGALVLFKGHWVDFRSIVRSFLPFIVVVCLGVFMVGWPFLLGLLSFSLLLIGWFILGTYLFRNLLEC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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