Glyma17g34720 - SoyBase

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Report for Sequence Feature Glyma17g34720

Feature Type:	gene_model
Chromosome:	Gm17
Start:	38700558
stop:	38705405
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g34720

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G25690	AT	Annotation by Michelle Graham. TAIR10: Hydroxyproline-rich glycoprotein family protein \| chr3:9354061-9357757 FORWARD LENGTH=863	SoyBase	E_val: 8.00E-107	ISS
GO:0006364	GO-bp	Annotation by Michelle Graham. GO Biological Process: rRNA processing	SoyBase	N/A	ISS
GO:0009902	GO-bp	Annotation by Michelle Graham. GO Biological Process: chloroplast relocation	SoyBase	N/A	ISS
GO:0010027	GO-bp	Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization	SoyBase	N/A	ISS
GO:0010207	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosystem II assembly	SoyBase	N/A	ISS
GO:0019684	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis, light reaction	SoyBase	N/A	ISS
GO:0034660	GO-bp	Annotation by Michelle Graham. GO Biological Process: ncRNA metabolic process	SoyBase	N/A	ISS
GO:0035304	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of protein dephosphorylation	SoyBase	N/A	ISS
GO:0042793	GO-bp	Annotation by Michelle Graham. GO Biological Process: transcription from plastid promoter	SoyBase	N/A	ISS
GO:0045893	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009707	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast outer membrane	SoyBase	N/A	ISS
PTHR23213	Panther	FORMIN-RELATED	JGI		ISS
PTHR23213:SF81	Panther	OS08G0129600 PROTEIN	JGI		ISS
UniRef100_G7IB73	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Chloroplast unusual positioning 1A n=1 Tax=Medicago truncatula RepID=G7IB73_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233E3AC	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E3AC related cluster n=1 Tax=unknown RepID=UPI000233E3AC	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g34720

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g34720

Paralog	Evidence	Comments
Glyma14g10801	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g34720 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g229000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g34720

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g34720

Limit To All Plant Sequences

>Glyma17g34720.3   sequence type=CDS   gene model=Glyma17g34720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGGAAGAAAACCCATCAGAGAACAGGTCCAAAGCTTCAAAATTTTCAGACCAAAACCAAGCCCCAAAGCCTCAAAACACCAAAGGAGCCAACCTCAACAACAACAACAAAACAAGGTTGTGGGGTGCTCACATTGTGAAAGGCTTCTCCGCTGACAAAAAAACCAAGTCATTTGCCAGCAAAAAACTAACATCTTCAACAACAACAACAGCAATATCCGAGAATGTTGTTACAAACCAGAACAACAGCAATAAACCTTTTGTGCCTTCTTCTCATTCTCGAGTGAAAAGGTCCCTCATAGGTGACTTATCATGTTCAATAAACCCTGCTCAGGTTCATCCACACGCTTTCCCAACTCATAGAAGACAATCTTCAACCGATTTGTTCACTGAGTTGGATCACATGAGAGGATTGCTGCAAGAGTCAAAGGAGAGGGAAAGCAAGTTGCATGCTGAACTTTCCGAGTGCAGGAAGAAAATGACTGAGGTGGATGAGGTTGTGAAGAGGGTTGGTTTGTTGGAGCAAGAGAAGGCCACTCTCACCGAGCAATTGGGTGCTGCATTGAGTTGTGAGGAAGTGAAAGGGGAAGAAGAGCAGCACAAGGAGGTGAAGGTGCAGAATCTTGAGCTGGAGGTTGTGGAGCTGAGGAGGTTGAACAAGGAGCTGCAGATGCAGAAGAGGAACCTCTCTTGCAGGCTCTCTTCTCTTGAGGCTCAGCTGGCTTGTCCTAACAAATCTTCTGAGAGTGACGTTGTTGCCAAAATTAAAGCCGAGGCATCATTGCTGAGGCTCACGAATGAAGACCTGTGCAAACAAGTAGAAGGTTTGCAGATAAGCAGATTGAATGAGGTTGAGGAGCTTGCCTACTTGAGGTGGGTGAATTCATGTTTAAGAAACGAGTTGAAGAACACATGCTCAGCGTTGGATTCGGATAAGCCATCTAGTCCTCATTCAGTTGTGAGCAGTAGTGATGATTGTGTTAGTTCTTTCTCTGATCAAACCAATAGGTATTCAAATTGTGGAAGTGCAAATAGGTTCAATATGGTGAAGAAGCCAAAAAAGTGGCCTATAACTAGTGATGATTTATCACAAGTAGAGTGCCAAGGTAGTCTCATTGAGAAGAATAGGATTGAATCAGATGTAGGGGGAAGCCCTAGAAGAAGACACTCTATCAGTGGATCAAACTACTCAGAGGAAGAGGTTTCTTTGAGTAAGAGAAGACAGTCAGATTGTTTTGTGTGTTCAAAAGAAATGGAAAAGGAATCAGTGGCATTGTCTGTTCAACAATCTGGTTTGGAGATTGTCCAAAGACCACAATATTTTAGCAATTGCCAAGAAGCTAACAAGCTTTTGGTTTCTTCAGATGTCGAGAAAAGAGCCCTACGCATTCCTAATCCACCTCCAAGGCCTTCATGTTCTATATCTATCAAGACAAAACAAGAAACTTCAGCTCAAGTTCCACTGCCTCCACCTCCACCTCCTCCCCCACCTCCTATGAATTTTGCATCAAGAAGTAACATGGCATCGGTGAAACGAGCGCCACAAGTGGTGGAATTGTACCATTCACTTATGAAGAGAGACTCAAGAAAGGATTCTTCAAATGGAGGACTCTCTGATGCACCAGATGTTTCTGATGTTCGTAGCAGCATGATTGGAGAAATTGAGAACCGTTCATCGCATTTGCTTGCTATAAAGGCAGATATTGAAACTCAGGGAGAATTCGTGAATTCATTGATAAGAGAGGTGAACGATGCAGTTTATCAGAACATAGAAGATGTAGTGGCATTTGTGAAGTGGCTGGATGATGAACTTTGCTTCCTTGTGGATGAGAGGGCTGTCCTTAAGCATTTTGATTGGCCAGAAAAGAAAGCTGACACATTAAGAGAAGCAGCATTTGGCTATCAAGATTTGAAAAAATTAGAATCTGAAGTTTCCTCTTACAAGGATGATCCCAGGCTACCTGGTGACATTGCTCTAAAGAAAATGGTTGCATTGTCAGAAAAGATGGAGCGTACAGTTTATAACCTTCTTCGCACAAGAGATTCATTAATGCGTCATAGCAAGGAGTTTAAAATTCCAATAGAATGGATGCTTGACAATGGAATTATTGGCAAGATAAAGCTAAGCTCGGTTAAATTGGCTAAAAAGTATATGAAAAGGGTAGCTATGGAACTTCAAGTAAAGTCAGCATTAGAAAAAGATCCTGCAATGGATTACATGCTTCTCCAAGGAGTGAGATTTGCTTTTAGAATCCATCAGTTTGCAGGAGGGTTTGATGCAGAAACAATGCATGCATTCGAGGAGCTTCGCAATCTGGCCTCTCTTCTTAACAAAACATGA

Predicted protein sequences of Glyma17g34720

Limit To All Plant Sequences

>Glyma17g34720.3   sequence type=predicted peptide   gene model=Glyma17g34720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKEENPSENRSKASKFSDQNQAPKPQNTKGANLNNNNKTRLWGAHIVKGFSADKKTKSFASKKLTSSTTTTAISENVVTNQNNSNKPFVPSSHSRVKRSLIGDLSCSINPAQVHPHAFPTHRRQSSTDLFTELDHMRGLLQESKERESKLHAELSECRKKMTEVDEVVKRVGLLEQEKATLTEQLGAALSCEEVKGEEEQHKEVKVQNLELEVVELRRLNKELQMQKRNLSCRLSSLEAQLACPNKSSESDVVAKIKAEASLLRLTNEDLCKQVEGLQISRLNEVEELAYLRWVNSCLRNELKNTCSALDSDKPSSPHSVVSSSDDCVSSFSDQTNRYSNCGSANRFNMVKKPKKWPITSDDLSQVECQGSLIEKNRIESDVGGSPRRRHSISGSNYSEEEVSLSKRRQSDCFVCSKEMEKESVALSVQQSGLEIVQRPQYFSNCQEANKLLVSSDVEKRALRIPNPPPRPSCSISIKTKQETSAQVPLPPPPPPPPPPMNFASRSNMASVKRAPQVVELYHSLMKRDSRKDSSNGGLSDAPDVSDVRSSMIGEIENRSSHLLAIKADIETQGEFVNSLIREVNDAVYQNIEDVVAFVKWLDDELCFLVDERAVLKHFDWPEKKADTLREAAFGYQDLKKLESEVSSYKDDPRLPGDIALKKMVALSEKMERTVYNLLRTRDSLMRHSKEFKIPIEWMLDNGIIGKIKLSSVKLAKKYMKRVAMELQVKSALEKDPAMDYMLLQGVRFAFRIHQFAGGFDAETMHAFEELRNLASLLNKT*

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