Glyma17g34710 - SoyBase

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Report for Sequence Feature Glyma17g34710

Feature Type:	gene_model
Chromosome:	Gm17
Start:	38691143
stop:	38693338
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g34710

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G60030	AT	Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75335.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). \| chr5:24172082-24172960 REVERSE LENGTH=292	SoyBase	E_val: 3.00E-17	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
UniRef100_I1MXB3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MXB3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g34710

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g34710 not represented in the dataset	Glyma17g34710 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g34710

Paralog	Evidence	Comments
Glyma14g10810	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g34710 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g228900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g34710

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g34710

Limit To All Plant Sequences

>Glyma17g34710.2   sequence type=transcript   gene model=Glyma17g34710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGCACTTCAACATCCCAAACCCTAGGTAAGACTTCAAGGTATATGTGCGAGGGCCAAAGGGCAGGAAGATGAAGACAATCTCTGGACATTGTGTTTCGGTAAAAGACATATCAGTTTCAAAAGCAGCTAAAATTCTCACAAAGTTTGTCTCTGCTGACAATGGTGCTTCTCATGTCATCAATGCATATCTCCACCGAGCTTCTGCATCTTTCAATGAGCTCAAGCAGCTCCACAAGGAGCTTGGGTCATCTCACTCTCATAAGAAACACAAAAGGCACAGAACAGAGAATGGCAATGGCAGTGGGAAGGTAGTGGAAAATTCTGTTCAGAGTGTTGATATTAACAAGGAGCTCAGCATTGGGCATGTGAAATCTGATCTGTTCAAAAGGCAACAAACTGGCAGTGGGAATGCTGATCAAGATGATGAAAATTTTAGTCAAGAACTTGATGGTTTTATTGGGTATCAAACTGAAAATGTGGATGGGGGTGAGATGCATAAGAAGAAGAAAAAGAAGAAGCAGGAAGTTGAGTCCTTGCACGACATAGATAGCACCGTTAAATTTGGAGTGAGGGAAGCTGATGGAAAGCTACCTAATGGATCCCAAAATGAAGTTGAGTCAGCCAGAGAACAGGGAAATGAAGGCGACATCAAGACGGGGATGGAAGAGGGAAGGAAACAGAAAAGTGGAAAGAAGCCCAAAGTAACTACTAGTAGTTTTTCCAGTTATAAGGGTGAGGCTGAGAATGGAAAAGATCTAGAACAACGAAAAGAGATGGAAAAAACATTATGCAACAGCTTGGAGGGTGAAAATGGAGTGCTTGGTAGTTCCCAGTATTTACAAATCAAGAAGAAAAAGAAATACAAGAAAGGAAGCGAGACTAAATTATATGCTGAAGAGGTAAAGTTGGAGCAAAGTAAGAATAGGAGAAGTGATGATGCAGAAGGGAGACCAGAAGATCCAACTGGGGATTTGTCCAAGAAGAAAAGGAAAAAGACACACAACGGTGATATTTAAATTTAGGTGTTTTATAAACTCACTTGATAGTTGTTTAATCCTTTTTCAAATTGTTGAGGGATTTGCACTTGTACAATTGATTACATTGCGGCATCAATTTTTTATCTATCAATCATCCATGTAGTCTTACAAATGTGGCTGCATTCAAAATATTGATTGCAATCATCAGCTGTTGGTGATACTAAATTAATTGGTTAGACTGTAGAGCAATGACCACTCACCAGGGGTTTTGGCTCTTAGAGTTTACATATTTGTTAGGTAATTACTTTTGATTTATTGACATTAGTTGTCTAGATCTGGGGAAATTTGTTGTAACTGCTGCAGAATTTTCACTAGGTTCATCGGAAAACCAATTTAGAGGCTTGCTATTTTAATTATTGTATGGTGTTTGCATATGTTTTGTTTATGAATTTATTTTGGCCGTAGTTACAGATGAGGCTAGATATACACTAATCTTAATTGCATTGGGTAGAGAACATGTCTAATTTCAGAATCTTGAGTTCTTGGTGTGGGAAAATTGTTTTTTTT

>Glyma17g34710.3   sequence type=transcript   gene model=Glyma17g34710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTCTCTGTTTCTTCTCTATTCAGTTTCATAATATTAGTTCAATTAGGGTTAGCAAATGGGGCATTTTAGTGATTTTTATTGGTTTCACTTTCTGTATGCCAGACCCAGATGTATTTTAGTGGCTTGAAGCATCAAGAATAATAAAATCTTCGCTCATAGAAGAAAAAAAATTGATATTTAATAAGATTATAGTAGGTATATGTGCGAGGGCCAAAGGGCAGGAAGATGAAGACAATCTCTGGACATTGTGTTTCGGTAAAAGACATATCAGTTTCAAAAGCAGCTAAAATTCTCACAAAGTTTGTCTCTGCTGACAATGGTGCTTCTCATGTCATCAATGCATATCTCCACCGAGCTTCTGCATCTTTCAATGAGCTCAAGCAGCTCCACAAGGAGCTTGGGTCATCTCACTCTCATAAGAAACACAAAAGGCACAGAACAGAGAATGGCAATGGCAGTGGGAAGGTAGTGGAAAATTCTGTTCAGAGTGTTGATATTAACAAGGAGCTCAGCATTGGGCATGTGAAATCTGATCTGTTCAAAAGGCAACAAACTGGCAGTGGGAATGCTGATCAAGATGATGAAAATTTTAGTCAAGAACTTGATGGTTTTATTGGGTATCAAACTGAAAATGTGGATGGGGGTGAGATGCATAAGAAGAAGAAAAAGAAGAAGCAGGAAGTTGAGTCCTTGCACGACATAGATAGCACCGTTAAATTTGGAGTGAGGGAAGCTGATGGAAAGCTACCTAATGGATCCCAAAATGAAGTTGAGTCAGCCAGAGAACAGGGAAATGAAGGCGACATCAAGACGGGGATGGAAGAGGGAAGGAAACAGAAAAGTGGAAAGAAGCCCAAAGTAACTACTAGTAGTTTTTCCAGTTATAAGGGTGAGGCTGAGAATGGAAAAGATCTAGAACAACGAAAAGAGATGGAAAAAACATTATGCAACAGCTTGGAGGGTGAAAATGGAGTGCTTGGTAGTTCCCAGTATTTACAAATCAAGAAGAAAAAGAAATACAAGAAAGGAAGCGAGACTAAATTATATGCTGAAGAGGTAAAGTTGGAGCAAAGTAAGAATAGGAGAAGTGATGATGCAGAAGGGAGACCAGAAGATCCAACTGGGGATTTGTCCAAGAAGAAAAGGAAAAAGACACACAACGGTGATATTTAAATTTAGGTGTTTTATAAACTCACTTGATAGTTGTTTAATCCTTTTTCAAATTGTTGAGGGATTTGCACTTGTACAATTGATTACATTGCGGCATCAATTTTTTATCTATCAATCATCCATGTAGTCTTACAAATGTGGCTGCATTCAAAATATTGATTGCAATCATCAGCTGTTGGTGATACTAAATTAATTGGTTAGACTGTAGAGCAATGACCACTCACCAGGGGTTTTGGCTCTTAGAGTTTACATATTTGTTAGGTAATTACTTTTGATTTATTGACATTAGTTGTCTAGATCTGGGGAAATTTGTTGTAACTGCTGCAGAATTTTCACTAGGTTCATCGGAAAACCAATTTAGAGGCTTGCTATTTTAATTATTGTATGGTGTTTGCATATGTTTTGTTTATGAATTTATTTTGGCCGTAGTTACAGATGAGGCTAGATATACACTAATCTTAATTGCATTGGGTAGAGAACATGTCTAATTTCAGAATCTTGAGTTCTTGGTGTGGGAAAATTGTTTTTTTT

Coding sequences of Glyma17g34710

Limit To All Plant Sequences

>Glyma17g34710.1   sequence type=CDS   gene model=Glyma17g34710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGACAATCTCTGGACATTGTGTTTCGGTAAAAGACATATCAGTTTCAAAAGCAGCTAAAATTCTCACAAAGTTTGTCTCTGCTGACAATGGTGCTTCTCATGTCATCAATGCATATCTCCACCGAGCTTCTGCATCTTTCAATGAGCTCAAGCAGCTCCACAAGGAGCTTGGGTCATCTCACTCTCATAAGAAACACAAAAGGCACAGAACAGAGAATGGCAATGGCAGTGGGAAGGTAGTGGAAAATTCTGTTCAGAGTGTTGATATTAACAAGGAGCTCAGCATTGGGCATGTGAAATCTGATCTGTTCAAAAGGCAACAAACTGGCAGTGGGAATGCTGATCAAGATGATGAAAATTTTAGTCAAGAACTTGATGGTTTTATTGGGTATCAAACTGAAAATGTGGATGGGGGTGAGATGCATAAGAAGAAGAAAAAGAAGAAGCAGGAAGTTGAGTCCTTGCACGACATAGATAGCACCGTTAAATTTGGAGTGAGGGAAGCTGATGGAAAGCTACCTAATGGATCCCAAAATGAAGTTGAGTCAGCCAGAGAACAGGGAAATGAAGGCGACATCAAGACGGGGATGGAAGAGGGAAGGAAACAGAAAAGTGGAAAGAAGCCCAAAGTAACTACTAGTAGTTTTTCCAGTTATAAGGGTGAGGCTGAGAATGGAAAAGATCTAGAACAACGAAAAGAGATGGAAAAAACATTATGCAACAGCTTGGAGGGTGAAAATGGAGTGCTTGGTAGTTCCCAGTATTTACAAATCAAGAAGAAAAAGAAATACAAGAAAGGAAGCGAGACTAAATTATATGCTGAAGAGGTAAAGTTGGAGCAAAGTAAGAATAGGAGAAGTGATGATGCAGAAGGGAGACCAGAAGATCCAACTGGGGATTTGTCCAAGAAGAAAAGGAAAAAGACACACAACGGTGATATTTAA

>Glyma17g34710.2   sequence type=CDS   gene model=Glyma17g34710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGACAATCTCTGGACATTGTGTTTCGGTAAAAGACATATCAGTTTCAAAAGCAGCTAAAATTCTCACAAAGTTTGTCTCTGCTGACAATGGTGCTTCTCATGTCATCAATGCATATCTCCACCGAGCTTCTGCATCTTTCAATGAGCTCAAGCAGCTCCACAAGGAGCTTGGGTCATCTCACTCTCATAAGAAACACAAAAGGCACAGAACAGAGAATGGCAATGGCAGTGGGAAGGTAGTGGAAAATTCTGTTCAGAGTGTTGATATTAACAAGGAGCTCAGCATTGGGCATGTGAAATCTGATCTGTTCAAAAGGCAACAAACTGGCAGTGGGAATGCTGATCAAGATGATGAAAATTTTAGTCAAGAACTTGATGGTTTTATTGGGTATCAAACTGAAAATGTGGATGGGGGTGAGATGCATAAGAAGAAGAAAAAGAAGAAGCAGGAAGTTGAGTCCTTGCACGACATAGATAGCACCGTTAAATTTGGAGTGAGGGAAGCTGATGGAAAGCTACCTAATGGATCCCAAAATGAAGTTGAGTCAGCCAGAGAACAGGGAAATGAAGGCGACATCAAGACGGGGATGGAAGAGGGAAGGAAACAGAAAAGTGGAAAGAAGCCCAAAGTAACTACTAGTAGTTTTTCCAGTTATAAGGGTGAGGCTGAGAATGGAAAAGATCTAGAACAACGAAAAGAGATGGAAAAAACATTATGCAACAGCTTGGAGGGTGAAAATGGAGTGCTTGGTAGTTCCCAGTATTTACAAATCAAGAAGAAAAAGAAATACAAGAAAGGAAGCGAGACTAAATTATATGCTGAAGAGGTAAAGTTGGAGCAAAGTAAGAATAGGAGAAGTGATGATGCAGAAGGGAGACCAGAAGATCCAACTGGGGATTTGTCCAAGAAGAAAAGGAAAAAGACACACAACGGTGATATTTAA

>Glyma17g34710.3   sequence type=CDS   gene model=Glyma17g34710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGACAATCTCTGGACATTGTGTTTCGGTAAAAGACATATCAGTTTCAAAAGCAGCTAAAATTCTCACAAAGTTTGTCTCTGCTGACAATGGTGCTTCTCATGTCATCAATGCATATCTCCACCGAGCTTCTGCATCTTTCAATGAGCTCAAGCAGCTCCACAAGGAGCTTGGGTCATCTCACTCTCATAAGAAACACAAAAGGCACAGAACAGAGAATGGCAATGGCAGTGGGAAGGTAGTGGAAAATTCTGTTCAGAGTGTTGATATTAACAAGGAGCTCAGCATTGGGCATGTGAAATCTGATCTGTTCAAAAGGCAACAAACTGGCAGTGGGAATGCTGATCAAGATGATGAAAATTTTAGTCAAGAACTTGATGGTTTTATTGGGTATCAAACTGAAAATGTGGATGGGGGTGAGATGCATAAGAAGAAGAAAAAGAAGAAGCAGGAAGTTGAGTCCTTGCACGACATAGATAGCACCGTTAAATTTGGAGTGAGGGAAGCTGATGGAAAGCTACCTAATGGATCCCAAAATGAAGTTGAGTCAGCCAGAGAACAGGGAAATGAAGGCGACATCAAGACGGGGATGGAAGAGGGAAGGAAACAGAAAAGTGGAAAGAAGCCCAAAGTAACTACTAGTAGTTTTTCCAGTTATAAGGGTGAGGCTGAGAATGGAAAAGATCTAGAACAACGAAAAGAGATGGAAAAAACATTATGCAACAGCTTGGAGGGTGAAAATGGAGTGCTTGGTAGTTCCCAGTATTTACAAATCAAGAAGAAAAAGAAATACAAGAAAGGAAGCGAGACTAAATTATATGCTGAAGAGGTAAAGTTGGAGCAAAGTAAGAATAGGAGAAGTGATGATGCAGAAGGGAGACCAGAAGATCCAACTGGGGATTTGTCCAAGAAGAAAAGGAAAAAGACACACAACGGTGATATTTAA

Predicted protein sequences of Glyma17g34710

Limit To All Plant Sequences

>Glyma17g34710.1   sequence type=predicted peptide   gene model=Glyma17g34710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKTISGHCVSVKDISVSKAAKILTKFVSADNGASHVINAYLHRASASFNELKQLHKELGSSHSHKKHKRHRTENGNGSGKVVENSVQSVDINKELSIGHVKSDLFKRQQTGSGNADQDDENFSQELDGFIGYQTENVDGGEMHKKKKKKKQEVESLHDIDSTVKFGVREADGKLPNGSQNEVESAREQGNEGDIKTGMEEGRKQKSGKKPKVTTSSFSSYKGEAENGKDLEQRKEMEKTLCNSLEGENGVLGSSQYLQIKKKKKYKKGSETKLYAEEVKLEQSKNRRSDDAEGRPEDPTGDLSKKKRKKTHNGDI*

>Glyma17g34710.2   sequence type=predicted peptide   gene model=Glyma17g34710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKTISGHCVSVKDISVSKAAKILTKFVSADNGASHVINAYLHRASASFNELKQLHKELGSSHSHKKHKRHRTENGNGSGKVVENSVQSVDINKELSIGHVKSDLFKRQQTGSGNADQDDENFSQELDGFIGYQTENVDGGEMHKKKKKKKQEVESLHDIDSTVKFGVREADGKLPNGSQNEVESAREQGNEGDIKTGMEEGRKQKSGKKPKVTTSSFSSYKGEAENGKDLEQRKEMEKTLCNSLEGENGVLGSSQYLQIKKKKKYKKGSETKLYAEEVKLEQSKNRRSDDAEGRPEDPTGDLSKKKRKKTHNGDI*

>Glyma17g34710.3   sequence type=predicted peptide   gene model=Glyma17g34710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKTISGHCVSVKDISVSKAAKILTKFVSADNGASHVINAYLHRASASFNELKQLHKELGSSHSHKKHKRHRTENGNGSGKVVENSVQSVDINKELSIGHVKSDLFKRQQTGSGNADQDDENFSQELDGFIGYQTENVDGGEMHKKKKKKKQEVESLHDIDSTVKFGVREADGKLPNGSQNEVESAREQGNEGDIKTGMEEGRKQKSGKKPKVTTSSFSSYKGEAENGKDLEQRKEMEKTLCNSLEGENGVLGSSQYLQIKKKKKYKKGSETKLYAEEVKLEQSKNRRSDDAEGRPEDPTGDLSKKKRKKTHNGDI*

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