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Report for Sequence Feature Glyma17g34660
Feature Type: gene_model
Chromosome: Gm17
Start: 38642113
stop: 38645742
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma17g34660
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G10970 AT
Annotation by Michelle Graham. TAIR10: zinc transporter 4 precursor | chr1:3665201-3666933 REVERSE LENGTH=408
SoyBase E_val: 4.00E-147 ISS
GO:0006812 GO-bp
Annotation by Michelle Graham. GO Biological Process: cation transport
SoyBase N/A ISS
GO:0030001 GO-bp
Annotation by Michelle Graham. GO Biological Process: metal ion transport
SoyBase N/A ISS
GO:0055085 GO-bp
Annotation by Michelle Graham. GO Biological Process: transmembrane transport
SoyBase N/A ISS
GO:0071577 GO-bp
Annotation by Michelle Graham. GO Biological Process: zinc ion transmembrane transport
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
GO:0016021 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane
SoyBase N/A ISS
GO:0005375 GO-mf
Annotation by Michelle Graham. GO Molecular Function: copper ion transmembrane transporter activity
SoyBase N/A ISS
GO:0005385 GO-mf
Annotation by Michelle Graham. GO Molecular Function: zinc ion transmembrane transporter activity
SoyBase N/A ISS
GO:0005515 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein binding
SoyBase N/A ISS
GO:0008324 GO-mf
Annotation by Michelle Graham. GO Molecular Function: cation transmembrane transporter activity
SoyBase N/A ISS
GO:0046873 GO-mf
Annotation by Michelle Graham. GO Molecular Function: metal ion transmembrane transporter activity
SoyBase N/A ISS
KOG1558
KOG
Fe2+/Zn2+ regulated transporter
JGI ISS
PTHR11040 Panther
ZINC-IRON TRANSPORTER
JGI ISS
PTHR11040:SF1 Panther
ZINC/IRON TRANSPORTER
JGI ISS
PF02535 PFAM
ZIP Zinc transporter
JGI ISS
UniRef100_I1MXA8 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MXA8_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q6VM17 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Metal transport protein n=1 Tax=Medicago truncatula RepID=Q6VM17_MEDTR
SoyBase E_val: 2.00E-163 ISS
Expression Patterns of Glyma17g34660
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma17g34660
Paralog Evidence Comments
Glyma14g10841 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma17g34660 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.17g228600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma17g34660
Transcripts of Glyma17g34660
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma17g34660.3 sequence type=transcript gene model=Glyma17g34660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
CTTTTCCATTGCAACAAGTTGTAAGTTGTAACCAAAAGTCCACTTTCTGATTTCCGGTTCCGTTCGTTCCCTCCTAACCACTTCCCATTTTATTCTTCATTTCACTGACACCACACTTTATTTACATCTTCGTATTTCCCTTTCCTCGAAACTTAATTAGAACTCAAAATATAGAAAAATAAGACAACATATTAATTCGTCGTGTTCCTCATCATGTTCCTATTTGAGGATCTCTGGTCCCTCCCGCGCCTCTTCTCAGAGTCGCTTAATTTACAGTCTTTACGCGAATCCTTTACGAGCTCGAGCTGTGACAGAACGGAGTCGGAGCAATGCCGCGACGAGTCGGCGGCGATGGTTCTGAAATTCGTGGCGGTGGCGTCGATTCTGGTCGCCGGATTCGGGGGAGTCTCGATTCCGCTGGTCGGGAAGTCGCGGCGGTTTCTTCGACCGGACGGCGACGTTTTCGCGGCGGCGAAGGCGTTCGCGGCGGGGGTGATTTTAGCGACGGGGTTCGTCCACATGCTGAGGGACTCGTGGGACGCGCTTCGGGAGCCGTGCTTGGGGACGCACTCGCGCGCGTGGGCGAAGTTTCCCTTCACCGGTTTCTTCGCCATGGTGTCAGCGCTCTTTACTCTACTGGTTGACTTTTTAGCGACGGAATATTACGAGCGCAGAGAGGCGCGTGGGCGCGTGGAGCGAGGGAAGGTTGTTGATTATGATGAAGGTTGTGACGAGGCGTTGTTGGAAACGGGAATCGTGGAGGTTAAGGATCTTGGGCGAGGGGGAAGACACTCCCACTCTCACGACGGCGATGATGTGGAAAGTAGTGTTCGACACGTCGTCGTTTCACAGGTATTGGAACTTGGGATTGTATCACATTCGATGATAATTGGGTTATCTCTAGGAGTTTCACAAAGTCCCTGTACCATGAAACCCCTAATTGTGGCATTATCCTTCCATCAATTCTTTGAAGGATTTGCACTTGGTGGTTGCATCTCCCAAGCCCAATTCAAGACCTTATCAGCAACAATAATGTCATGTTTTTTTGCACTAACAACGCCACTTGGTGTTGCTATTGGAGCTAGTGTTGCTTCAATTTTTAACCCTTACAGTCCAGTAGCACTCATCACTGAAGGCATCTTGGACGCCTTGTCAGCTGGGATTTTAGTGTATATGGCTTTAGTGGACTTAATAGCTGCAGATTTTCTTAGCAAGAAAATGCGTTGTAACTTTAGGTTTCAGATAATATGTTACTGTCTGCTTTTCCTTGGGGCTGGATTGATGTCTTCACTTGCAATTTGGGCATGATACTTTCCTATGTTGCTGTAAATTATTTTTCAATTAATGTTGATATATAGGTTTATTGTTTTTAACGTTGTGATCATGTTCCTTTCTGTAACCACTAGTAATTAACTCAAGAAAAATATAGAGGATACTCAAGATAGATTGCTAAAAGGGGTGTGCTGTCAATTAAAGCATCTGCTCTCATTATATACTGTGTGAGTTGTTCTAACTTGTAAATTCTCTTGTATCTATTTTTTATTCTTATCAATAAAAAAATAATACAAAGTGAGG
Coding sequences of Glyma17g34660
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma17g34660.2 sequence type=CDS gene model=Glyma17g34660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTTCCTATTTGAGGTTTCTTCTTGCTCTGTCTTTTTTTCCCTTATTCACTGCTTCCAATATCTTCAATTTCAATTCTTTTATTCTTCTTTTAATTTTCAGGATCTCTGGTCCCTCCCGCGCCTCTTCTCAGAGTCGCTTAATTTACAGTCTTTACGCGAATCCTTTACGAGCTCGAGCTGTGACAGAACGGAGTCGGAGCAATGCCGCGACGAGTCGGCGGCGATGGTTCTGAAATTCGTGGCGGTGGCGTCGATTCTGGTCGCCGGATTCGGGGGAGTCTCGATTCCGCTGGTCGGGAAGTCGCGGCGGTTTCTTCGACCGGACGGCGACGTTTTCGCGGCGGCGAAGGCGTTCGCGGCGGGGGTGATTTTAGCGACGGGGTTCGTCCACATGCTGAGGGACTCGTGGGACGCGCTTCGGGAGCCGTGCTTGGGGACGCACTCGCGCGCGTGGGCGAAGTTTCCCTTCACCGGTTTCTTCGCCATGGTGTCAGCGCTCTTTACTCTACTGGTTGACTTTTTAGCGACGGAATATTACGAGCGCAGAGAGGCGCGTGGGCGCGTGGAGCGAGGGAAGGTTGTTGATTATGATGAAGGTTGTGACGAGGCGTTGTTGGAAACGGGAATCGTGGAGGTTAAGGATCTTGGGCGAGGGGGAAGACACTCCCACTCTCACGACGGCGATGATGTGGAAAGTAGTGTTCGACACGTCGTCGTTTCACAGGTATTGGAACTTGGGATTGTATCACATTCGATGATAATTGGGTTATCTCTAGGAGTTTCACAAAGTCCCTGTACCATGAAACCCCTAATTGTGGCATTATCCTTCCATCAATTCTTTGAAGGATTTGCACTTGGTGGTTGCATCTCCCAAGCCCAATTCAAGACCTTATCAGCAACAATAATGTCATGTTTTTTTGCACTAACAACGCCACTTGGTGTTGCTATTGGAGCTAGTGTTGCTTCAATTTTTAACCCTTACAGTCCAGTAGCACTCATCACTGAAGGCATCTTGGACGCCTTGTCAGCTGGGATTTTAGTGTATATGGCTTTAGTGGACTTAATAGCTGCAGATTTTCTTAGCAAGAAAATGCGTTGTAACTTTAGGTTTCAGATAATATGTTACTGTCTGCTTTTCCTTGGGGCTGGATTGATGTCTTCACTTGCAATTTGGGCATGA
>Glyma17g34660.3 sequence type=CDS gene model=Glyma17g34660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTTCCTATTTGAGGATCTCTGGTCCCTCCCGCGCCTCTTCTCAGAGTCGCTTAATTTACAGTCTTTACGCGAATCCTTTACGAGCTCGAGCTGTGACAGAACGGAGTCGGAGCAATGCCGCGACGAGTCGGCGGCGATGGTTCTGAAATTCGTGGCGGTGGCGTCGATTCTGGTCGCCGGATTCGGGGGAGTCTCGATTCCGCTGGTCGGGAAGTCGCGGCGGTTTCTTCGACCGGACGGCGACGTTTTCGCGGCGGCGAAGGCGTTCGCGGCGGGGGTGATTTTAGCGACGGGGTTCGTCCACATGCTGAGGGACTCGTGGGACGCGCTTCGGGAGCCGTGCTTGGGGACGCACTCGCGCGCGTGGGCGAAGTTTCCCTTCACCGGTTTCTTCGCCATGGTGTCAGCGCTCTTTACTCTACTGGTTGACTTTTTAGCGACGGAATATTACGAGCGCAGAGAGGCGCGTGGGCGCGTGGAGCGAGGGAAGGTTGTTGATTATGATGAAGGTTGTGACGAGGCGTTGTTGGAAACGGGAATCGTGGAGGTTAAGGATCTTGGGCGAGGGGGAAGACACTCCCACTCTCACGACGGCGATGATGTGGAAAGTAGTGTTCGACACGTCGTCGTTTCACAGGTATTGGAACTTGGGATTGTATCACATTCGATGATAATTGGGTTATCTCTAGGAGTTTCACAAAGTCCCTGTACCATGAAACCCCTAATTGTGGCATTATCCTTCCATCAATTCTTTGAAGGATTTGCACTTGGTGGTTGCATCTCCCAAGCCCAATTCAAGACCTTATCAGCAACAATAATGTCATGTTTTTTTGCACTAACAACGCCACTTGGTGTTGCTATTGGAGCTAGTGTTGCTTCAATTTTTAACCCTTACAGTCCAGTAGCACTCATCACTGAAGGCATCTTGGACGCCTTGTCAGCTGGGATTTTAGTGTATATGGCTTTAGTGGACTTAATAGCTGCAGATTTTCTTAGCAAGAAAATGCGTTGTAACTTTAGGTTTCAGATAATATGTTACTGTCTGCTTTTCCTTGGGGCTGGATTGATGTCTTCACTTGCAATTTGGGCATGA
Predicted protein sequences of Glyma17g34660
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma17g34660.2 sequence type=predicted peptide gene model=Glyma17g34660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MFLFEVSSCSVFFSLIHCFQYLQFQFFYSSFNFQDLWSLPRLFSESLNLQSLRESFTSSSCDRTESEQCRDESAAMVLKFVAVASILVAGFGGVSIPLVGKSRRFLRPDGDVFAAAKAFAAGVILATGFVHMLRDSWDALREPCLGTHSRAWAKFPFTGFFAMVSALFTLLVDFLATEYYERREARGRVERGKVVDYDEGCDEALLETGIVEVKDLGRGGRHSHSHDGDDVESSVRHVVVSQVLELGIVSHSMIIGLSLGVSQSPCTMKPLIVALSFHQFFEGFALGGCISQAQFKTLSATIMSCFFALTTPLGVAIGASVASIFNPYSPVALITEGILDALSAGILVYMALVDLIAADFLSKKMRCNFRFQIICYCLLFLGAGLMSSLAIWA*
>Glyma17g34660.3 sequence type=predicted peptide gene model=Glyma17g34660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MFLFEDLWSLPRLFSESLNLQSLRESFTSSSCDRTESEQCRDESAAMVLKFVAVASILVAGFGGVSIPLVGKSRRFLRPDGDVFAAAKAFAAGVILATGFVHMLRDSWDALREPCLGTHSRAWAKFPFTGFFAMVSALFTLLVDFLATEYYERREARGRVERGKVVDYDEGCDEALLETGIVEVKDLGRGGRHSHSHDGDDVESSVRHVVVSQVLELGIVSHSMIIGLSLGVSQSPCTMKPLIVALSFHQFFEGFALGGCISQAQFKTLSATIMSCFFALTTPLGVAIGASVASIFNPYSPVALITEGILDALSAGILVYMALVDLIAADFLSKKMRCNFRFQIICYCLLFLGAGLMSSLAIWA*