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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G11920 | AT | Annotation by Michelle Graham. TAIR10: 6-&1-fructan exohydrolase | chr5:3839490-3842206 FORWARD LENGTH=550 | SoyBase | E_val: 0 | ISS |
| GO:0001666 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to hypoxia | SoyBase | N/A | ISS |
| GO:0005975 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process | SoyBase | N/A | ISS |
| GO:0009862 | GO-bp | Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010310 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of hydrogen peroxide metabolic process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0004553 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds | SoyBase | N/A | ISS |
| GO:0031219 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: levanase activity | SoyBase | N/A | ISS |
| GO:0051670 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: inulinase activity | SoyBase | N/A | ISS |
| KOG0228 | KOG | Beta-fructofuranosidase (invertase) | JGI | ISS | |
| PF00251 | PFAM | Glycosyl hydrolases family 32 N-terminal domain | JGI | ISS | |
| PF08244 | PFAM | Glycosyl hydrolases family 32 C terminal | JGI | ISS | |
| UniRef100_G7I9W3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Beta-fructofuranosidase, insoluble isoenzyme CWINV1 n=1 Tax=Medicago truncatula RepID=G7I9W3_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MXA0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MXA0_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma17g34590 not represented in the dataset |
Glyma17g34590 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g227900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g34590.3 sequence type=transcript gene model=Glyma17g34590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTTGAAAGTCAAGTCATCAATAAATATAATTTCTAGTTGCATTTTTCTCAGAGTGGTAGGTGTATATTTAAATTCTAATAGGTTATCACTTTGTGTGGACCTTATATGTGGCTTTTTCCATCCATAGTGTGCATAATTGCATATATTAGCCCTTATCTTCAAACCAAGACATTAGCCATCTAGCTCTTGTTGACATTCCAATAACTTTGGTGCTATGATCATGGAGATCAATGCATCCCCCGACAACATTAATTCAGTCAAGTACAACGTACATGAAAAACAGCCTTACCGAACTTGGTACCACTTTCAGCCCCCACAAAATTGGATGAATGATCCAAATGGACCAATGTACTACAAAGGAGTTTACCACTTTTTCTACCAACATAACCCTTATGCACCAACCTTTGGTAGGCATATGGTATGGGGTCATTCCGTATCCTATGATCTCATCAATTGGATTCATCTAAACCATATTCTTGAACCAAGTGAGTCCTATGACATTAATGGCTGTTATTCAGGCTCAATCACAACCCTCCCAGTGGAAAAACCTGTTATCATGTATACAGGGAGTGATACTAACAAACATCAAATTCAGAACTTGGCTATGCCAAAGAATCTATCAGACCCCTTCTTAAGGGAATGGGTGAAAGACCCCCAAAACCCTATCATGATTCCACCAAGTGGAATTGATGTGGAGGGTTTCAGAGACCCGACAACTGCATGGCAAGGAGGTGATGGAAAATGGAGAGTGATTATTGGTGCCAAAACGGGTGATGATGGGAAGGCTCTTCTCTACCATAGTGATGATTTTGTTAATTGGAAACTGCATCCCAATCCTTTGTATGCATCAGACAATACTGGAATGTTTGAGTGTCCAGATTTCTTTCCAGTGCACATAAGTGGCTCAAAGAGTGGGGTTGATACATCAATCCAAAACTCCAGTGTCAAGCATGTCTTGAAAATGAGTTATCAAAACAAACAACTAGAATACTATTTTCTTGGTGAATATTTTCCTGATCAGGAAAAGTTTATTCCTGATGCTGATTGGGCAAGAACTGGTTTGGACTTGATATTGGACCATGGAATGTTTTATGCTTCCAAGTCATTTTTTGACAATGCCAAGAAAAGAAGGATATTGTGGGGATGGTCAAAGGAGTGTGACACCACACAAGATGATTATGAGAAAGGATGGGCTGGTCTACAGAGTATTCCAAGGCAAGTTTGGCTTGATAAAAGTGGGAAGTGGTTGATGCAGTGGCCAATTGAAGAGGTAGAAAAACTACGTGACAAACAAGTTAGCATAACGGGAGAGAAACTAATTGGTGGATCAACTATTGAAGTCTCTGGTATTACTGCATCACAAGTCGATGTAGAAGTGTTGTTTGAGCTACCTGAACTAGAGAATGCGGAGTGGCTAGATGAAAGTGAAGTTGATTCTCACTTGCTGTGTAGTGAAGAATATGCATCAAGAAGTGGCATAATAGGGCCATTTGGTTTGTTAGCTTTAGCATCTGAGGACCAAACAGAACACACTGCAATTTTCTTCAGAATATATAGAGCTCCCAATAGATATTTATGCCTCATGTGCAGTGACCAAAGCAGGTCTTCATTGAGGCAGGACCTTGATAAAACCCCATATGGAACAATCTTTGACATTGACCCTAATGTCAAGACGATTTCACTTAGAAGTTTGGTATGTTTATTACTAATAATAAATATCATCCTACATATCTTAGAATCCTACATCTTATGTGAATTCAGACCTAATTTGAATCCACGTGAAAGTTGAATTTTTTTCCAATATCATGCTTGCTAG
>Glyma17g34590.1 sequence type=CDS gene model=Glyma17g34590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATCATGGAGATCAATGCATCCCCCGACAACATTAATTCAGTCAAGTACAACGTACATGAAAAACAGCCTTACCGAACTTGGTACCACTTTCAGCCCCCACAAAATTGGATGAATGATCCAAATGGACCAATGTACTACAAAGGAGTTTACCACTTTTTCTACCAACATAACCCTTATGCACCAACCTTTGGTAGGCATATGGTATGGGGTCATTCCGTATCCTATGATCTCATCAATTGGATTCATCTAAACCATATTCTTGAACCAAGTGAGTCCTATGACATTAATGGCTGTTATTCAGGCTCAATCACAACCCTCCCAGTGGAAAAACCTGTTATCATGTATACAGGGAGTGATACTAACAAACATCAAATTCAGAACTTGGCTATGCCAAAGAATCTATCAGACCCCTTCTTAAGGGAATGGGTGAAAGACCCCCAAAACCCTATCATGATTCCACCAAGTGGAATTGATGTGGAGGGTTTCAGAGACCCGACAACTGCATGGCAAGGAGGTGATGGAAAATGGAGAGTGATTATTGGTGCCAAAACGGGTGATGATGGGAAGGCTCTTCTCTACCATAGTGATGATTTTGTTAATTGGAAACTGCATCCCAATCCTTTGTATGCATCAGACAATACTGGAATGTTTGAGTGTCCAGATTTCTTTCCAGTGCACATAAGTGGCTCAAAGAGTGGGGTTGATACATCAATCCAAAACTCCAGTGTCAAGCATGTCTTGAAAATGAGTTATCAAAACAAACAACTAGAATACTATTTTCTTGGTGAATATTTTCCTGATCAGGAAAAGTTTATTCCTGATGCTGATTGGGCAAGAACTGGTTTGGACTTGATATTGGACCATGGAATGTTTTATGCTTCCAAGTCATTTTTTGACAATGCCAAGAAAAGAAGGATATTGTGGGGATGGTCAAAGGAGTGTGACACCACACAAGATGATTATGAGAAAGGATGGGCTGGTCTACAGAGTATTCCAAGGCAAGTTTGGCTTGATAAAAGTGGGAAGTGGTTGATGCAGTGGCCAATTGAAGAGGTAGAAAAACTACGTGACAAACAAGTTAGCATAACGGGAGAGAAACTAATTGGTGGATCAACTATTGAAGTCTCTGGTATTACTGCATCACAAGTCGATGTAGAAGTGTTGTTTGAGCTACCTGAACTAGAGAATGCGGAGTGGCTAGATGAAAGTGAAGTTGATTCTCACTTGCTGTGTAGTGAAGAATATGCATCAAGAAGTGGCATAATAGGGCCATTTGGTTTGTTAGCTTTAGCATCTGAGGACCAAACAGAACACACTGCAATTTTCTTCAGAATATATAGAGCTCCCAATAGATATTTATGCCTCATGTGCAGTGACCAAAGCAGGTCTTCATTGAGGCAGGACCTTGATAAAACCCCATATGGAACAATCTTTGACATTGACCCTAATGTCAAGACGATTTCACTTAGAAGTTTGATTGACCGCTCCATTATTGAGAGTTTTGGGGAGAAAGGGAGAATTTGTATTACCAGTAGAGTTTATCCCTCGTTGGCTATTGACAAAGATGCACATCTTTATGTTTTCAACAATGGAAGCCAGAGTGTGGTGATCTCTGAACTGAATGCTTGGAGCATGAAGGAAGCAGAATTTAGTTAA >Glyma17g34590.3 sequence type=CDS gene model=Glyma17g34590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATCATGGAGATCAATGCATCCCCCGACAACATTAATTCAGTCAAGTACAACGTACATGAAAAACAGCCTTACCGAACTTGGTACCACTTTCAGCCCCCACAAAATTGGATGAATGATCCAAATGGACCAATGTACTACAAAGGAGTTTACCACTTTTTCTACCAACATAACCCTTATGCACCAACCTTTGGTAGGCATATGGTATGGGGTCATTCCGTATCCTATGATCTCATCAATTGGATTCATCTAAACCATATTCTTGAACCAAGTGAGTCCTATGACATTAATGGCTGTTATTCAGGCTCAATCACAACCCTCCCAGTGGAAAAACCTGTTATCATGTATACAGGGAGTGATACTAACAAACATCAAATTCAGAACTTGGCTATGCCAAAGAATCTATCAGACCCCTTCTTAAGGGAATGGGTGAAAGACCCCCAAAACCCTATCATGATTCCACCAAGTGGAATTGATGTGGAGGGTTTCAGAGACCCGACAACTGCATGGCAAGGAGGTGATGGAAAATGGAGAGTGATTATTGGTGCCAAAACGGGTGATGATGGGAAGGCTCTTCTCTACCATAGTGATGATTTTGTTAATTGGAAACTGCATCCCAATCCTTTGTATGCATCAGACAATACTGGAATGTTTGAGTGTCCAGATTTCTTTCCAGTGCACATAAGTGGCTCAAAGAGTGGGGTTGATACATCAATCCAAAACTCCAGTGTCAAGCATGTCTTGAAAATGAGTTATCAAAACAAACAACTAGAATACTATTTTCTTGGTGAATATTTTCCTGATCAGGAAAAGTTTATTCCTGATGCTGATTGGGCAAGAACTGGTTTGGACTTGATATTGGACCATGGAATGTTTTATGCTTCCAAGTCATTTTTTGACAATGCCAAGAAAAGAAGGATATTGTGGGGATGGTCAAAGGAGTGTGACACCACACAAGATGATTATGAGAAAGGATGGGCTGGTCTACAGAGTATTCCAAGGCAAGTTTGGCTTGATAAAAGTGGGAAGTGGTTGATGCAGTGGCCAATTGAAGAGGTAGAAAAACTACGTGACAAACAAGTTAGCATAACGGGAGAGAAACTAATTGGTGGATCAACTATTGAAGTCTCTGGTATTACTGCATCACAAGTCGATGTAGAAGTGTTGTTTGAGCTACCTGAACTAGAGAATGCGGAGTGGCTAGATGAAAGTGAAGTTGATTCTCACTTGCTGTGTAGTGAAGAATATGCATCAAGAAGTGGCATAATAGGGCCATTTGGTTTGTTAGCTTTAGCATCTGAGGACCAAACAGAACACACTGCAATTTTCTTCAGAATATATAGAGCTCCCAATAGATATTTATGCCTCATGTGCAGTGACCAAAGCAGGTCTTCATTGAGGCAGGACCTTGATAAAACCCCATATGGAACAATCTTTGACATTGACCCTAATGTCAAGACGATTTCACTTAGAAGTTTGGTATGTTTATTACTAATAATAAATATCATCCTACATATCTTAGAATCCTACATCTTATGTGAATTCAGACCTAATTTGAATCCACGTGAAAGTTGA
>Glyma17g34590.1 sequence type=predicted peptide gene model=Glyma17g34590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MIMEINASPDNINSVKYNVHEKQPYRTWYHFQPPQNWMNDPNGPMYYKGVYHFFYQHNPYAPTFGRHMVWGHSVSYDLINWIHLNHILEPSESYDINGCYSGSITTLPVEKPVIMYTGSDTNKHQIQNLAMPKNLSDPFLREWVKDPQNPIMIPPSGIDVEGFRDPTTAWQGGDGKWRVIIGAKTGDDGKALLYHSDDFVNWKLHPNPLYASDNTGMFECPDFFPVHISGSKSGVDTSIQNSSVKHVLKMSYQNKQLEYYFLGEYFPDQEKFIPDADWARTGLDLILDHGMFYASKSFFDNAKKRRILWGWSKECDTTQDDYEKGWAGLQSIPRQVWLDKSGKWLMQWPIEEVEKLRDKQVSITGEKLIGGSTIEVSGITASQVDVEVLFELPELENAEWLDESEVDSHLLCSEEYASRSGIIGPFGLLALASEDQTEHTAIFFRIYRAPNRYLCLMCSDQSRSSLRQDLDKTPYGTIFDIDPNVKTISLRSLIDRSIIESFGEKGRICITSRVYPSLAIDKDAHLYVFNNGSQSVVISELNAWSMKEAEFS* >Glyma17g34590.3 sequence type=predicted peptide gene model=Glyma17g34590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MIMEINASPDNINSVKYNVHEKQPYRTWYHFQPPQNWMNDPNGPMYYKGVYHFFYQHNPYAPTFGRHMVWGHSVSYDLINWIHLNHILEPSESYDINGCYSGSITTLPVEKPVIMYTGSDTNKHQIQNLAMPKNLSDPFLREWVKDPQNPIMIPPSGIDVEGFRDPTTAWQGGDGKWRVIIGAKTGDDGKALLYHSDDFVNWKLHPNPLYASDNTGMFECPDFFPVHISGSKSGVDTSIQNSSVKHVLKMSYQNKQLEYYFLGEYFPDQEKFIPDADWARTGLDLILDHGMFYASKSFFDNAKKRRILWGWSKECDTTQDDYEKGWAGLQSIPRQVWLDKSGKWLMQWPIEEVEKLRDKQVSITGEKLIGGSTIEVSGITASQVDVEVLFELPELENAEWLDESEVDSHLLCSEEYASRSGIIGPFGLLALASEDQTEHTAIFFRIYRAPNRYLCLMCSDQSRSSLRQDLDKTPYGTIFDIDPNVKTISLRSLVCLLLIINIILHILESYILCEFRPNLNPRES*
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