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Report for Sequence Feature Glyma17g34540

Feature Type:gene_model
Chromosome:Gm17
Start:38530068
stop:38533703
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g34540
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G26150AT Annotation by Michelle Graham. TAIR10: heat shock transcription factor A2 | chr2:11135856-11137217 FORWARD LENGTH=345 SoyBaseE_val: 2.00E-124ISS
GO:0001666GO-bp Annotation by Michelle Graham. GO Biological Process: response to hypoxia SoyBaseN/AISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0006457GO-bp Annotation by Michelle Graham. GO Biological Process: protein folding SoyBaseN/AISS
GO:0009407GO-bp Annotation by Michelle Graham. GO Biological Process: toxin catabolic process SoyBaseN/AISS
GO:0009408GO-bp Annotation by Michelle Graham. GO Biological Process: response to heat SoyBaseN/AISS
GO:0009644GO-bp Annotation by Michelle Graham. GO Biological Process: response to high light intensity SoyBaseN/AISS
GO:0010200GO-bp Annotation by Michelle Graham. GO Biological Process: response to chitin SoyBaseN/AISS
GO:0010286GO-bp Annotation by Michelle Graham. GO Biological Process: heat acclimation SoyBaseN/AISS
GO:0034605GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to heat SoyBaseN/AISS
GO:0034620GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to unfolded protein SoyBaseN/AISS
GO:0034976GO-bp Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress SoyBaseN/AISS
GO:0042542GO-bp Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide SoyBaseN/AISS
GO:0045893GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0071456GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to hypoxia SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0043565GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding SoyBaseN/AISS
KOG0627 KOG Heat shock transcription factor JGI ISS
PTHR10015Panther HEAT SHOCK TRANSCRIPTION FACTOR JGI ISS
PTHR10015:SF7Panther HEAT SHOCK TRANSCRIPTION FACTOR JGI ISS
PF00447PFAM HSF-type DNA-binding JGI ISS
UniRef100_E7CQA1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Heat shock transcription factor A-2 n=1 Tax=Arachis hypogaea subsp. hypogaea RepID=E7CQA1_ARAHY SoyBaseE_val: 2.00E-158ISS
UniRef100_I1MX97UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MX97_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma17g34540
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g34540
ParalogEvidenceComments
Glyma14g11030 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g34540 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g227600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g34540
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma17g34540
>Glyma17g34540.3   sequence type=transcript   gene model=Glyma17g34540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAACATTGTTTCACTTAAACACATTCGCACATAAAAAGAAACCATTAACATTTAACCATACTACTAGATTATTAATTACTAGTACTTGTGTTGTTGTGTCACTCAAACTAAACTAAACTCAATTTCCAATTTCCTTAATCTTCTTGTGTTGATGTGCATGGAGAGAATCAGAGTGAAGGAGGAAGAAGCAATGACATGTGGAGGTGGTGGTTCATCATCTTCAAGCTTTATTTCTCCACAGGCACAGCCCATGGAAGGGTTGCACGAGGTGGGTCCCCCTCCGTTTCTGAGCAAGATCTTTGACATGGTGGAAGATCCTTCCACGGATTCCATTGTTTCATGGAGCATGGCTCGCAACAGCTTTGTCGTGTGGGACTCTCACAAGTTTTCTGCTCACATTCTGCCTCGTTACTTCAAGCACGCCAATTTCTCCAGCTTCATTCGCCAGCTCAACACCTATGGGTTTAGGAAAGTTGATCCTGATAAATGGGAATTTGCAAACGAAGGTTTTCTGGCAGGACAAAGGCACTTATTGAAGACCATAAAGAGAAGAAGAAATGTGTCACACAGCAATCAACAAAAAGGAGGAAGTGGAGCTTGTGTTGAAGTGGGGAAGTTTGGACTAGAAGGTGAGTTGGAGAGGTTGAAAAGGGATAGAAACATTTTGATGGCAGAAATTGTGAGATTGAGGCACCAACAACTGAACTCAAGGGACCAATTAAGTGCCATGGAGGCAAGAATGCAAGCCACAGAGAAGAAACAGCAACAAATGATGAGTTTCTTAGCAAAAGCACTAAGCAATCCATCTTTCATGCAGCAATTAGTCCACAAAACCCCCCAAAGCAGAGAAGTGTTGTTGGGTGTTGAAATCAATAGGAAAAGGAGACTACCTGCTTGTCCAAGTGTGGAGAACTTGCAACAAGATAATCAAGATTTGGCAACTATGGAGACTGATATGGACACTTTTTTCGCACCGGCTTATGATAATGAATTCGGTAATGAAATCGATGAGCCTGCATCGATTTTGGTTGAGGATTCAATCTTGGAGGACTTTCTCAACAAAGACTTGATTACTGGGAATCCGGAGGATGAAGTTATAATTGGTGATTGCACCCAAGTCGATGTGCCGATGGAGGATTTGGTAGCAAACCCTGATGATTGGAGTGAGCAATTGCAGGACCTTGTGGATCATATGGACTACCTAGGATCCAAACCATAGAGGGATGAGAATTATACTATTATTGTGTCCTCAGCTTGGTCTCTTTAATTTCATTCACATTGCATCATGATGCAGGGAAGGTGGTAGATACAGAAGAAGCAAACAAATACTGCTCTTGTTTGGATCCTTTATGAAGTTTTATGAATATTACTTGTGCTAATGCTACAGATCATTTTATTAATTATTTGGATGACCTATTTGTTTGCATTTTATGTTATGCAGGAGAGACAAGTGGGGGCACTTCATGGTTGTGATCCAAATAATTGCTGAGAAATTGTAATGGTATCATTCTGCTTCATAGGATATCATTGGCTGGATTTCATTGTTCAGGAGAGGATATAAAAACTATCATCTAGTTCTTCTAGTACGAATAGCCTTTCAGAGGAACCACATTTGTTCCCATTCTTTTTCCTTCAAAA
Coding sequences of Glyma17g34540
>Glyma17g34540.2   sequence type=CDS   gene model=Glyma17g34540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGCATGGAGAGAATCAGAGTGAAGGAGGAAGAAGCAATGACATGTGGAGGTGGTGGTTCATCATCTTCAAGCTTTATTTCTCCACAGGCACAGCCCATGGAAGGGTTGCACGAGGTGGGTCCCCCTCCGTTTCTGAGCAAGATCTTTGACATGGTGGAAGATCCTTCCACGGATTCCATTGTTTCATGGAGCATGGCTCGCAACAGCTTTGTCGTGTGGGACTCTCACAAGTTTTCTGCTCACATTCTGCCTCGTTACTTCAAGCACGCCAATTTCTCCAGCTTCATTCGCCAGCTCAACACCTATGGGTTTAGGAAAGTTGATCCTGATAAATGGGAATTTGCAAACGAAGGTTTTCTGGCAGGACAAAGGCACTTATTGAAGACCATAAAGAGAAGAAGAAATGTGTCACACAGCAATCAACAAAAAGGAGGAAGTGGAGCTTGTGTTGAAGTGGGGAAGTTTGGACTAGAAGGTGAGTTGGAGAGGTTGAAAAGGGATAGAAACATTTTGATGGCAGAAATTGTGAGATTGAGGCACCAACAACTGAACTCAAGGGACCAATTAAGTGCCATGGAGGCAAGAATGCAAGCCACAGAGAAGAAACAGCAACAAATGATGAGTTTCTTAGCAAAAGCACTAAGCAATCCATCTTTCATGCAGCAATTAGTCCACAAAACCCCCCAAAGCAGAGAAGTGTTGTTGGGTGTTGAAATCAATAGGAAAAGGAGACTACCTGCTTGTCCAAGTGTGGAGAACTTGCAACAAGATAATCAAGATTTGGCAACTATGGAGACTGATATGGACACTTTTTTCGCACCGGCTTATGATAATGAATTCGGTAATGAAATCGATGAGCCTGCATCGATTTTGGTTGAGGATTCAATCTTGGAGGACTTTCTCAACAAAGACTTGATTACTGGGAATCCGGAGGATGAAGTTATAATTGGTGATTGCACCCAAGTCGATGTGCCGATGGAGGATTTGGTAGCAAACCCTGATGATTGGAGTGAGCAATTGCAGGACCTTGTGGATCATATGGACTACCTAGGATCCAAACCATAG

>Glyma17g34540.3   sequence type=CDS   gene model=Glyma17g34540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGCATGGAGAGAATCAGAGTGAAGGAGGAAGAAGCAATGACATGTGGAGGTGGTGGTTCATCATCTTCAAGCTTTATTTCTCCACAGGCACAGCCCATGGAAGGGTTGCACGAGGTGGGTCCCCCTCCGTTTCTGAGCAAGATCTTTGACATGGTGGAAGATCCTTCCACGGATTCCATTGTTTCATGGAGCATGGCTCGCAACAGCTTTGTCGTGTGGGACTCTCACAAGTTTTCTGCTCACATTCTGCCTCGTTACTTCAAGCACGCCAATTTCTCCAGCTTCATTCGCCAGCTCAACACCTATGGGTTTAGGAAAGTTGATCCTGATAAATGGGAATTTGCAAACGAAGGTTTTCTGGCAGGACAAAGGCACTTATTGAAGACCATAAAGAGAAGAAGAAATGTGTCACACAGCAATCAACAAAAAGGAGGAAGTGGAGCTTGTGTTGAAGTGGGGAAGTTTGGACTAGAAGGTGAGTTGGAGAGGTTGAAAAGGGATAGAAACATTTTGATGGCAGAAATTGTGAGATTGAGGCACCAACAACTGAACTCAAGGGACCAATTAAGTGCCATGGAGGCAAGAATGCAAGCCACAGAGAAGAAACAGCAACAAATGATGAGTTTCTTAGCAAAAGCACTAAGCAATCCATCTTTCATGCAGCAATTAGTCCACAAAACCCCCCAAAGCAGAGAAGTGTTGTTGGGTGTTGAAATCAATAGGAAAAGGAGACTACCTGCTTGTCCAAGTGTGGAGAACTTGCAACAAGATAATCAAGATTTGGCAACTATGGAGACTGATATGGACACTTTTTTCGCACCGGCTTATGATAATGAATTCGGTAATGAAATCGATGAGCCTGCATCGATTTTGGTTGAGGATTCAATCTTGGAGGACTTTCTCAACAAAGACTTGATTACTGGGAATCCGGAGGATGAAGTTATAATTGGTGATTGCACCCAAGTCGATGTGCCGATGGAGGATTTGGTAGCAAACCCTGATGATTGGAGTGAGCAATTGCAGGACCTTGTGGATCATATGGACTACCTAGGATCCAAACCATAG
Predicted protein sequences of Glyma17g34540
>Glyma17g34540.2   sequence type=predicted peptide   gene model=Glyma17g34540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MCMERIRVKEEEAMTCGGGGSSSSSFISPQAQPMEGLHEVGPPPFLSKIFDMVEDPSTDSIVSWSMARNSFVVWDSHKFSAHILPRYFKHANFSSFIRQLNTYGFRKVDPDKWEFANEGFLAGQRHLLKTIKRRRNVSHSNQQKGGSGACVEVGKFGLEGELERLKRDRNILMAEIVRLRHQQLNSRDQLSAMEARMQATEKKQQQMMSFLAKALSNPSFMQQLVHKTPQSREVLLGVEINRKRRLPACPSVENLQQDNQDLATMETDMDTFFAPAYDNEFGNEIDEPASILVEDSILEDFLNKDLITGNPEDEVIIGDCTQVDVPMEDLVANPDDWSEQLQDLVDHMDYLGSKP*

>Glyma17g34540.3   sequence type=predicted peptide   gene model=Glyma17g34540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MCMERIRVKEEEAMTCGGGGSSSSSFISPQAQPMEGLHEVGPPPFLSKIFDMVEDPSTDSIVSWSMARNSFVVWDSHKFSAHILPRYFKHANFSSFIRQLNTYGFRKVDPDKWEFANEGFLAGQRHLLKTIKRRRNVSHSNQQKGGSGACVEVGKFGLEGELERLKRDRNILMAEIVRLRHQQLNSRDQLSAMEARMQATEKKQQQMMSFLAKALSNPSFMQQLVHKTPQSREVLLGVEINRKRRLPACPSVENLQQDNQDLATMETDMDTFFAPAYDNEFGNEIDEPASILVEDSILEDFLNKDLITGNPEDEVIIGDCTQVDVPMEDLVANPDDWSEQLQDLVDHMDYLGSKP*






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