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Report for Sequence Feature Glyma17g34210

Feature Type:gene_model
Chromosome:Gm17
Start:38082944
stop:38084665
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g34210
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G26170AT Annotation by Michelle Graham. TAIR10: WRKY DNA-binding protein 50 | chr5:9147176-9148128 REVERSE LENGTH=173 SoyBaseE_val: 2.00E-40ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0009867GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway SoyBaseN/AISS
GO:0050832GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to fungus SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0043565GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding SoyBaseN/AISS
PF03106PFAM WRKY DNA -binding domain JGI ISS
UniRef100_G7J8C4UniRef Annotation by Michelle Graham. Most informative UniRef hit: WRKY transcription factor n=1 Tax=Medicago truncatula RepID=G7J8C4_MEDTR SoyBaseE_val: 4.00E-63ISS
UniRef100_I1MX70UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MX70_SOYBN SoyBaseE_val: 5.00E-96ISS

Proteins Associated with Glyma17g34210
LocusGene SymbolProtein Name
WRKY165 WRKY Transcription Factor

Expression Patterns of Glyma17g34210
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g34210
ParalogEvidenceComments
Glyma14g11440 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g34210 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g224800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g34210
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma17g34210
>Glyma17g34210.3   sequence type=transcript   gene model=Glyma17g34210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCTTACCAAAAACTATGACTGTGGTGTGCGTTTATATATTGTTTGCGCCGTGATAATTTCTTTTCTAATAATTCAGTTTGTACCAAAATGACAGACAAAATACCAAAACCACCACCACCAGATACACCTGACAGTGATGATTTCACCAACCAGTGGCCTTTTGAGCTCTCTGAGTACTTGAAATTCGATGATAATCAGTGGATGCATGATGGTCTTGAGTCATTTGCTTCTGAGAATGTCTCAAACCAGGTTCATCAAGTCAGTAATGCAGAAGATACTAGCAGTGGACGTGAGAATAGGGAAGTTAGAGAGAGAGTTGCATTCAAAATAATGTCAGAGATTGAAGTTCTTGATGATGGCTACAGATGGAGGAAGTACGGAAAGAAAATGGTGAAAAACAGTCCCAATCCAAGGAATTACTATAGGTGTTCAGTGGATGGATGCAACGTGAAAAAGAGAGTGGAGAGAGACAAGGATGACCCAAGGTATGTAATAACAACCTACGAAGGCAACCACACTCATCCAAGTTCTTCCTAGGTCGAATATGAAGAGAAGTTTTGGCAGTGTATATATTATGTTTTGTTGGCCACATCTATTAGTACTTTCTTATTAAATACTGCAAGTGCTTTTGCCATGTTTTTTTTAAGCCATCATCAATGATAATAACTAATAATAACTGCTCTTGTAGAATAGATCTTTAAGGAAATATAGGAAATTAAAGTATGCTTTTGTTATCTTTACGACAAAAGTTTCTGACAGTTACCATGCTATCTCATCAAGATTAATTCAGGTCGATACGAC
Coding sequences of Glyma17g34210
>Glyma17g34210.2   sequence type=CDS   gene model=Glyma17g34210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACAGACAAAATACCAAAACCACCACCACCAGATACACCTGACAGTGATGATTTCACCAACCAGTGGCCTTTTGAGCTCTCTGAGTACTTGAAATTCGATGATAATCAGTGGATGCATGATGGTCTTGAGTCATTTGCTTCTGAGAATGTCTCAAACCAGGTTCATCAAGTCAGTAATGCAGGTGAGTTTGGAGGAGGAAGCAGCCACTTTGAAGGGTCTTCTAGCAAAGATACTAGCAGTGGACGTGAGAATAGGGAAGTTAGAGAGAGAGTTGCATTCAAAATAATGTCAGAGATTGAAGTTCTTGATGATGGCTACAGATGGAGGAAGTACGGAAAGAAAATGGTGAAAAACAGTCCCAATCCAAGGAATTACTATAGGTGTTCAGTGGATGGATGCAACGTGAAAAAGAGAGTGGAGAGAGACAAGGATGACCCAAGGTATGTAATAACAACCTACGAAGGCAACCACACTCATCCAAGTTCTTCCTAG

>Glyma17g34210.3   sequence type=CDS   gene model=Glyma17g34210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACAGACAAAATACCAAAACCACCACCACCAGATACACCTGACAGTGATGATTTCACCAACCAGTGGCCTTTTGAGCTCTCTGAGTACTTGAAATTCGATGATAATCAGTGGATGCATGATGGTCTTGAGTCATTTGCTTCTGAGAATGTCTCAAACCAGGTTCATCAAGTCAGTAATGCAGAAGATACTAGCAGTGGACGTGAGAATAGGGAAGTTAGAGAGAGAGTTGCATTCAAAATAATGTCAGAGATTGAAGTTCTTGATGATGGCTACAGATGGAGGAAGTACGGAAAGAAAATGGTGAAAAACAGTCCCAATCCAAGGAATTACTATAGGTGTTCAGTGGATGGATGCAACGTGAAAAAGAGAGTGGAGAGAGACAAGGATGACCCAAGGTATGTAATAACAACCTACGAAGGCAACCACACTCATCCAAGTTCTTCCTAG
Predicted protein sequences of Glyma17g34210
>Glyma17g34210.2   sequence type=predicted peptide   gene model=Glyma17g34210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTDKIPKPPPPDTPDSDDFTNQWPFELSEYLKFDDNQWMHDGLESFASENVSNQVHQVSNAGEFGGGSSHFEGSSSKDTSSGRENREVRERVAFKIMSEIEVLDDGYRWRKYGKKMVKNSPNPRNYYRCSVDGCNVKKRVERDKDDPRYVITTYEGNHTHPSSS*

>Glyma17g34210.3   sequence type=predicted peptide   gene model=Glyma17g34210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTDKIPKPPPPDTPDSDDFTNQWPFELSEYLKFDDNQWMHDGLESFASENVSNQVHQVSNAEDTSSGRENREVRERVAFKIMSEIEVLDDGYRWRKYGKKMVKNSPNPRNYYRCSVDGCNVKKRVERDKDDPRYVITTYEGNHTHPSSS*






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