SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G25150 | AT | Annotation by Michelle Graham. TAIR10: TBP-associated factor 5 | chr5:8677117-8682058 FORWARD LENGTH=669 | SoyBase | E_val: 0 | ISS |
| GO:0000394 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation | SoyBase | N/A | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0006366 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transcription from RNA polymerase II promoter | SoyBase | N/A | ISS |
| GO:0007062 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion | SoyBase | N/A | ISS |
| GO:0007131 | GO-bp | Annotation by Michelle Graham. GO Biological Process: reciprocal meiotic recombination | SoyBase | N/A | ISS |
| GO:0033044 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of chromosome organization | SoyBase | N/A | ISS |
| GO:0042138 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meiotic DNA double-strand break formation | SoyBase | N/A | ISS |
| GO:0045132 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meiotic chromosome segregation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| KOG0263 | KOG | Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) | JGI | ISS | |
| PTHR19879 | Panther | WD40 REPEAT PROTEIN | JGI | ISS | |
| PF00400 | PFAM | WD domain, G-beta repeat | JGI | ISS | |
| PF04494 | PFAM | WD40 associated region in TFIID subunit | JGI | ISS | |
| UniRef100_G7J9V2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Transcription initiation factor TFIID subunit n=1 Tax=Medicago truncatula RepID=G7J9V2_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MX38 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MX38_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma17g33880 not represented in the dataset |
Glyma17g33880 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma14g11986 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g222200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g33880.4 sequence type=transcript gene model=Glyma17g33880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CGGGAAATAGAGAGAAAATTATTGAAATAGAAGAAAGTGAAAGTCTTCTTCAATCACAAACGAAACGAAGCTTAGAGTGTTATTGTTGTTGTTTCTGTGGTGTGGTTTTGGCCATGGATGAAGATCAAATAGAAGGTTGTGTGAGTGGGTACCTCAAGCAGAAAGGGTTTACGCAAAACGATGACCAACTTCAACTCACCAACACCGATTCATCTCTTCAACCCGACACTCTCAATCGCGCCCAATTGGAGAGAGGTTCTGCTAGATACCATGATGGGTATGGTAGACTAAGATCATGGGCATACAGGTCACTTGACTCATACAAGCATGAGCTGCTGCGTGTGCTTTTTCCACTATTTATCCATTGCTTCATGGATCTTGTGGCAAAAGGGAATCTTCAGGAAGCTTGGAACTTTTTCAATACCTTTCGTGAAGACCATGAAATGATGCATTCGCGAGACCTTCAAAAGTTGGAACTAGTTCTTTCTCCTACTCATTTTAAGGAAATGGAATTCGCTCATTCCCTTAGGCAGAGTAAATTCAACATAAAGATATGTGGGTATTCTTATGAGCTACTGATGCAACATCTACACAGTATGCAATCCACCACAATAATTGGTATTATCAATGAGCACATTAGCTTCCAAGTTACAGCTGGACAACCTAGCTCAACTTCTGATGATCCAGAAGCCGTTTCCCTCATTGGAAACATCAAGGATGAAGCAAACCAGATAAACCAGAAAGAAATACTTTGGGGAATGTTTAAAGACTCTGCAGAAGACTGTGTAGATAAGACTGGGTCCTTGCTTTCAGACACAGAAAAGGGTGAAGGGGAAGGCAAAGAGGGAGAGAATGATGAGATTAAGAAAAGGTCAATTGATGGAGGAAAGCAAGGTAGTTCAATAAAAAAGGCAAAAAAGGACAAGGCTGGCAGTGCAACAGGGAAAAATGCTAAACCAGAAGCTAACACTGTATCTGCAGCACCTCGCATTAAACCAGAGCTACCCTTGCCCACATTTTCAACTGATGTAGAACTTTCCATCCTAGAAGATTTAAGGAATCGTGTACAATTGAGTAGTGTTGCTCTCCCTTCAGTTAACTTCTACACAATTGTAAATACACATAATGGTTTAAGTTGTTCATCAATATCACATGATGGATCATTGATTGCTGGAGGATTTTCTGACTCGTCACTAAAGGTCTGGGATATGGCGAAACTTGAAAAACAACCCACCACTTCTTTTTCACAGGGAGGGAATGACACATCACAAAATGAACAAAATATTGGGCAAAATAGTGGGAAAAGACTGTGCACATTGTTTCAAGGTCATTCAGGGCCAGTTTATGCGGCTACTTTTAGTCCTGCTGGGGATTTTATTCTTTCCTCTTCAGCAGACAAAACAATTCGATTATGGAGTACAAAGCTTAATGCCAATCTTGTTTGTTACAAGGGTCACAATTACCCAATTTGGGATGTTCAGTTTAGTCCTGCAGGGCATTATTTTGCTAGCTGTTCACATGATAGAACAGCTAGGATTTGGTCCATGGACAGAATACAACCTTTGAGAATAATGGCAGGGCATTTGTCAGATGTTGATTGTGTGCAGTGGCATGTCAACTGCAACTACATTGCTACTGGCTCCAGTGACAAAACAGTTCGATTATGGGATGTACAGAGTGGGGAATGTGTTCGGGTTTTCATTGGTCACAGGAGTATGATTTTATCTTTGGCAATGTCTCCGGACGGTCGCTATATGGCATCTGGTGATGAAGACGGCACCATCATGATGTGGGACCTCTCTAGTGGCTGTTGCGTCACGCCTTTAGTCGGCCACACCTCATGTGTCTGGTCACTCGCTTTCAGTTGTGAAGGTTCTCTTCTAGCATCTGGATCCGCAGATTGCACAGTCAAATTTTGGGATGTAACTACGGGTATAAAGGTTCCAAGGAATGAAGAAAAAAGTGGGAATACTAACAGACTCAGATCATTGAAAAGCTTGCCAACCAAATCTGCTTCAGTTTACTCTCTTCAGTTTTGTCGAAGGAATCTTCTATTTGCAGCTGGAGCTATTGCAAAAACTGGCTGATAGCGTGTATTCAAATTTCAAAGTGACACTTCTGACTTGAAAACCAAAACAACTAATGCTGTGTTATACAGTTGTATTTGTAATTTTAGAGTAAATTGAATTGACATATACCATTGGCAAGTTTTGCTAATTCATGCATATTAACCACCCCCCCCCCCCCCATAAATGTGTAATTTATTGTAATATTATTCAGAGATCAGAAGAATTACTTTTTATTCAAGCTTTATTTTCATTTGTTTCTTTAAATTCTCTTTATGTGACCTTGTTTTATATTTTACTAATATAAATTCGCGTTGAAT
>Glyma17g33880.3 sequence type=CDS gene model=Glyma17g33880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATGAAGATCAAATAGAAGGTTGTGTGAGTGGGTACCTCAAGCAGAAAGGGTTTACGCAAAACGATGACCAACTTCAACTCACCAACACCGATTCATCTCTTCAACCCGACACTCTCAATCGCGCCCAATTGGAGAGAGGTTCTGCTAGATACCATGATGGGTATGGTAGACTAAGATCATGGGCATACAGGTCACTTGACTCATACAAGCATGAGCTGCTGCGTGTGCTTTTTCCACTATTTATCCATTGCTTCATGGATCTTGTGGCAAAAGGGAATCTTCAGGAAGCTTGGAACTTTTTCAATACCTTTCGTGAAGACCATGAAATGATGCATTCGCGAGACCTTCAAAAGTTGGAACTAGTTCTTTCTCCTACTCATTTTAAGGAAATGGAATTCGCTCATTCCCTTAGGCAGAGTAAATTCAACATAAAGATATGTGGGTATTCTTATGAGCTACTGATGCAACATCTACACAGTATGCAATCCACCACAATAATTGGTATTATCAATGAGCACATTAGCTTCCAAGTTACAGCTGGACAACCTAGCTCAACTTCTGATGATCCAGAAGCCGTTTCCCTCATTGGAAACATCAAGGATGAAGCAAACCAGATAAACCAGAAAGAAATACTTTGGGGAATGTTTAAAGACTCTGCAGAAGACTGTGTAGATAAGACTGGGTCCTTGCTTTCAGACACAGAAAAGGGTGAAGGGGAAGGCAAAGAGGGAGAGAATGATGAGATTAAGAAAAGGTCAATTGATGGAGGAAAGCAAGGTAGTTCAATAAAAAAGGCAAAAAAGGACAAGGCTGGCAGTGCAACAGGGAAAAATGCTAAACCAGAAGCTAACACTGTATCTGCAGCACCTCGCATTAAACCAGAGCTACCCTTGCCCACATTTTCAACTGATGTAGAACTTTCCATCCTAGAAGATTTAAGGAATCGTGTACAATTGAGTAGTGTTGCTCTCCCTTCAGTTAACTTCTACACAATTGTAAATACACATAATGGTTTAAGTTGTTCATCAATATCACATGATGGATCATTGATTGCTGGAGGATTTTCTGACTCGTCACTAAAGGTCTGGGATATGGCGAAACTTGAAAAACAACCCACCACTTCTTTTTCACAGGGAGGGAATGACACATCACAAAATGAACAAAATATTGGGCAAAATAGTGGGAAAAGACTGTGCACATTGTTTCAAGGTCATTCAGGGCCAGTTTATGCGGCTACTTTTAGTCCTGCTGGGGATTTTATTCTTTCCTCTTCAGCAGACAAAACAATTCGATTATGGAGTACAAAGCTTAATGCCAATCTTGTTTGTTACAAGGGTCACAATTACCCAATTTGGGATGTTCAGTTTAGTCCTGCAGGGCATTATTTTGCTAGCTGTTCACATGATAGAACAGCTAGGATTTGGTCCATGGACAGAATACAACCTTTGAGAATAATGGCAGGGCATTTGTCAGATGTTGATTGTGTGCAGTGGCATGTCAACTGCAACTACATTGCTACTGGCTCCAGTGACAAAACAGTTCGATTATGGGATGTACAGAGTGGGGAATGTGTTCGGGTTTTCATTGGTCACAGGAGTATGATTTTATCTTTGGCAATGTCTCCGGACGGTCGCTATATGGCATCTGGTGATGAAGACGGCACCATCATGATGTGGGACCTCTCTAGTGGCTGTTGCGTCACGCCTTTAGTCGGCCACACCTCATGTGTCTGGTCACTCGCTTTCAGTTGTGAAGGTTCTCTTCTAGCATCTGGATCCGCAGATTGCACAGTCAAATTTTGGGATGTAACTACGGGTATAAAGGTTCCAAGGAATGAAGAAAATAGAAGTGGGAATACTAACAGACTCAGATCATTGAAAAGCTTGCCAACCAAATCTGCTTCAGTTTACTCTCTTCAGTTTTGTCGAAGGAATCTTCTATTTGCAGCTGGAGCTATTGCAAAAACTGGCTGA >Glyma17g33880.4 sequence type=CDS gene model=Glyma17g33880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATGAAGATCAAATAGAAGGTTGTGTGAGTGGGTACCTCAAGCAGAAAGGGTTTACGCAAAACGATGACCAACTTCAACTCACCAACACCGATTCATCTCTTCAACCCGACACTCTCAATCGCGCCCAATTGGAGAGAGGTTCTGCTAGATACCATGATGGGTATGGTAGACTAAGATCATGGGCATACAGGTCACTTGACTCATACAAGCATGAGCTGCTGCGTGTGCTTTTTCCACTATTTATCCATTGCTTCATGGATCTTGTGGCAAAAGGGAATCTTCAGGAAGCTTGGAACTTTTTCAATACCTTTCGTGAAGACCATGAAATGATGCATTCGCGAGACCTTCAAAAGTTGGAACTAGTTCTTTCTCCTACTCATTTTAAGGAAATGGAATTCGCTCATTCCCTTAGGCAGAGTAAATTCAACATAAAGATATGTGGGTATTCTTATGAGCTACTGATGCAACATCTACACAGTATGCAATCCACCACAATAATTGGTATTATCAATGAGCACATTAGCTTCCAAGTTACAGCTGGACAACCTAGCTCAACTTCTGATGATCCAGAAGCCGTTTCCCTCATTGGAAACATCAAGGATGAAGCAAACCAGATAAACCAGAAAGAAATACTTTGGGGAATGTTTAAAGACTCTGCAGAAGACTGTGTAGATAAGACTGGGTCCTTGCTTTCAGACACAGAAAAGGGTGAAGGGGAAGGCAAAGAGGGAGAGAATGATGAGATTAAGAAAAGGTCAATTGATGGAGGAAAGCAAGGTAGTTCAATAAAAAAGGCAAAAAAGGACAAGGCTGGCAGTGCAACAGGGAAAAATGCTAAACCAGAAGCTAACACTGTATCTGCAGCACCTCGCATTAAACCAGAGCTACCCTTGCCCACATTTTCAACTGATGTAGAACTTTCCATCCTAGAAGATTTAAGGAATCGTGTACAATTGAGTAGTGTTGCTCTCCCTTCAGTTAACTTCTACACAATTGTAAATACACATAATGGTTTAAGTTGTTCATCAATATCACATGATGGATCATTGATTGCTGGAGGATTTTCTGACTCGTCACTAAAGGTCTGGGATATGGCGAAACTTGAAAAACAACCCACCACTTCTTTTTCACAGGGAGGGAATGACACATCACAAAATGAACAAAATATTGGGCAAAATAGTGGGAAAAGACTGTGCACATTGTTTCAAGGTCATTCAGGGCCAGTTTATGCGGCTACTTTTAGTCCTGCTGGGGATTTTATTCTTTCCTCTTCAGCAGACAAAACAATTCGATTATGGAGTACAAAGCTTAATGCCAATCTTGTTTGTTACAAGGGTCACAATTACCCAATTTGGGATGTTCAGTTTAGTCCTGCAGGGCATTATTTTGCTAGCTGTTCACATGATAGAACAGCTAGGATTTGGTCCATGGACAGAATACAACCTTTGAGAATAATGGCAGGGCATTTGTCAGATGTTGATTGTGTGCAGTGGCATGTCAACTGCAACTACATTGCTACTGGCTCCAGTGACAAAACAGTTCGATTATGGGATGTACAGAGTGGGGAATGTGTTCGGGTTTTCATTGGTCACAGGAGTATGATTTTATCTTTGGCAATGTCTCCGGACGGTCGCTATATGGCATCTGGTGATGAAGACGGCACCATCATGATGTGGGACCTCTCTAGTGGCTGTTGCGTCACGCCTTTAGTCGGCCACACCTCATGTGTCTGGTCACTCGCTTTCAGTTGTGAAGGTTCTCTTCTAGCATCTGGATCCGCAGATTGCACAGTCAAATTTTGGGATGTAACTACGGGTATAAAGGTTCCAAGGAATGAAGAAAAAAGTGGGAATACTAACAGACTCAGATCATTGAAAAGCTTGCCAACCAAATCTGCTTCAGTTTACTCTCTTCAGTTTTGTCGAAGGAATCTTCTATTTGCAGCTGGAGCTATTGCAAAAACTGGCTGA
>Glyma17g33880.3 sequence type=predicted peptide gene model=Glyma17g33880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDEDQIEGCVSGYLKQKGFTQNDDQLQLTNTDSSLQPDTLNRAQLERGSARYHDGYGRLRSWAYRSLDSYKHELLRVLFPLFIHCFMDLVAKGNLQEAWNFFNTFREDHEMMHSRDLQKLELVLSPTHFKEMEFAHSLRQSKFNIKICGYSYELLMQHLHSMQSTTIIGIINEHISFQVTAGQPSSTSDDPEAVSLIGNIKDEANQINQKEILWGMFKDSAEDCVDKTGSLLSDTEKGEGEGKEGENDEIKKRSIDGGKQGSSIKKAKKDKAGSATGKNAKPEANTVSAAPRIKPELPLPTFSTDVELSILEDLRNRVQLSSVALPSVNFYTIVNTHNGLSCSSISHDGSLIAGGFSDSSLKVWDMAKLEKQPTTSFSQGGNDTSQNEQNIGQNSGKRLCTLFQGHSGPVYAATFSPAGDFILSSSADKTIRLWSTKLNANLVCYKGHNYPIWDVQFSPAGHYFASCSHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHVNCNYIATGSSDKTVRLWDVQSGECVRVFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLSSGCCVTPLVGHTSCVWSLAFSCEGSLLASGSADCTVKFWDVTTGIKVPRNEENRSGNTNRLRSLKSLPTKSASVYSLQFCRRNLLFAAGAIAKTG* >Glyma17g33880.4 sequence type=predicted peptide gene model=Glyma17g33880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDEDQIEGCVSGYLKQKGFTQNDDQLQLTNTDSSLQPDTLNRAQLERGSARYHDGYGRLRSWAYRSLDSYKHELLRVLFPLFIHCFMDLVAKGNLQEAWNFFNTFREDHEMMHSRDLQKLELVLSPTHFKEMEFAHSLRQSKFNIKICGYSYELLMQHLHSMQSTTIIGIINEHISFQVTAGQPSSTSDDPEAVSLIGNIKDEANQINQKEILWGMFKDSAEDCVDKTGSLLSDTEKGEGEGKEGENDEIKKRSIDGGKQGSSIKKAKKDKAGSATGKNAKPEANTVSAAPRIKPELPLPTFSTDVELSILEDLRNRVQLSSVALPSVNFYTIVNTHNGLSCSSISHDGSLIAGGFSDSSLKVWDMAKLEKQPTTSFSQGGNDTSQNEQNIGQNSGKRLCTLFQGHSGPVYAATFSPAGDFILSSSADKTIRLWSTKLNANLVCYKGHNYPIWDVQFSPAGHYFASCSHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHVNCNYIATGSSDKTVRLWDVQSGECVRVFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLSSGCCVTPLVGHTSCVWSLAFSCEGSLLASGSADCTVKFWDVTTGIKVPRNEEKSGNTNRLRSLKSLPTKSASVYSLQFCRRNLLFAAGAIAKTG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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