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Report for Sequence Feature Glyma17g33703

Feature Type:gene_model
Chromosome:Gm17
Start:37669535
stop:37670751
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G10745AT Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G24980.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:3396553-3396795 FORWARD LENGTH=51 SoyBaseE_val: 2.00E-11ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_UPI000233E22AUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233E22A related cluster n=1 Tax=unknown RepID=UPI000233E22A SoyBaseE_val: 2.00E-37ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g33703 not represented in the dataset

Glyma17g33703 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma14g12187 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g221200 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma17g33703.1   sequence type=CDS   gene model=Glyma17g33703   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGAGTTCCGAATCGCAAGAGCATCATCCATGGATCTCGAATGCAGTTCCTTTGTTGGTGGTTCTTCTAATTGCACTTCACGTCTTCGCTTTGGTGTATTGGATTTATAGATTGGCCACTGACAATAAGCCACAACAGCAGCAGCAGCTACAACAACAGCAACAGCAACATCAACAGAGAACAAAGGCTCACTGA

>Glyma17g33703.1   sequence type=predicted peptide   gene model=Glyma17g33703   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSESQEHHPWISNAVPLLVVLLIALHVFALVYWIYRLATDNKPQQQQQLQQQQQQHQQRTKAH*







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