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Report for Sequence Feature Glyma17g33360

Feature Type:gene_model
Chromosome:Gm17
Start:37191068
stop:37196666
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G25050AT Annotation by Michelle Graham. TAIR10: Major facilitator superfamily protein | chr5:8632022-8633828 FORWARD LENGTH=499 SoyBaseE_val: 0ISS
GO:0006810GO-bp Annotation by Michelle Graham. GO Biological Process: transport SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0005215GO-mf Annotation by Michelle Graham. GO Molecular Function: transporter activity SoyBaseN/AISS
PTHR24003Panther MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PR JGI ISS
PTHR24003:SF331Panther JGI ISS
PF03092PFAM BT1 family JGI ISS
UniRef100_B9RNU1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Transporter, putative n=1 Tax=Ricinus communis RepID=B9RNU1_RICCO SoyBaseE_val: 0ISS
UniRef100_I1MWZ9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MWZ9_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma14g13070 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g218400 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma17g33360.1   sequence type=CDS   gene model=Glyma17g33360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAAGAGGAGGAAAATCAGGAAGATCCATGTGGCGAATCTATGGAGGAAAATGAACCCAAAAATGGGGTTTGGGACTGTTTCTGCATCCCAATTAATTGGTTTAGGATGCTTTCTAGGGAAATGCATTGGAGCTTTGTATTTGGAGTTGTGGTTGTTTATGGAATAAGCCAAGGACTTGGTGGAGCTCTTGCAGAAGTTGGCACTAAGTATTACATGAAAGATGTTCAGAAGGTGCAGCCATCTGAGGCACAGGTTTACAAAGGAATCACTTCCATTCCTTGGATTGTGAAGCCTCTTTGGGGTCTTCTCACTGATGTTCTCCCATTTTTCGGGTATCGCAGGAGACCTTACTTCATTTTTGCTGGTATCTTAGGAGTGATTGCCATGCTTCTGTTATCTTTGCATGAAAACCTGCATCTTATGTTGGCCCTTTTGGCATTAACAGCTGGGAGTGCTGCGGTGGCAATAGCAGATGTGACCATTGATGCCTGTGTGGCACAGAACAGTATCTCTCAACCCTCACTTGCTGCTGACATGCAAAGTTTATGTGCTTTCAGTTCTTCTGTTGGATCACTATTTGGTTACTTCATTAGTGGTATCTTTGTTCACCTTCTAGGCCCTATGGGGGTGTTTGGTTTGATGACTATCCCAGCTGGACTTATAATTTCGGTTGGTTTTCTGCTTTATGAGCCTCGTATGCACAACACATCTTACACACAGGTGAAACAAAATTTTATTGATGCTGGCAAGGCTATGTGGACTACATTGAGGAGTGAAGATGTATGGGGGCCTTGTTTATACATGTATTTTTCCCTTGCATTGAGTTTGGATATCCGTGAAGGAATGTTTTATTGGTATACAGACTCAAAGGGTGGACCATCTTTCTCTCAGGAGAGTGTTGGTTTTATATTTTCAATTAGTTCAGGGGGGGCACTTTTAGGTGCAATACTATACCAGTATGCTCTAAAGGATTATGCATTCAGGAACTTACTCTTCTGGACTCAGTTGATTTATGGCTTGTCAGGGATGCTTGATCTGATTCTGGTCTTTAGATTGAACCTTAAGTTTGGCATACCAGATTATTTCTTTGTTGTGATTGTTGAAAGCATAGCTCAAATGACTAATAGGCTCAAGTGGATGCCTATGCTTGTGCTTAGCTCAAAGCTTTGTCCCTCAGGTATTGAAGGCACCTTTTTTGCACTCCTAATGTCAATTGATAATGTTGGACTTCTCTCAGCATCATGGGGTGGAGGCTTTGTTCTCCACATTCTGAGGATCACCAGAACAAAGTTTGATAACATTTGGTTGGCGATTTTGATCCGCAACATTTTAAGGATTGCTCCACTTTGGCTGCTGTTTTTGGTGCCTAGAGCTGACCCCAGCTCTTCAATTCTTCCAAGTAAAAACATGAATTCAAAGGTGGCTATTGACACTTCAGACATCAAAAATGTTGAATTGGTGTCCCTTGTACACAGTCTTGAGGTAAATAGTTGA

>Glyma17g33360.1   sequence type=predicted peptide   gene model=Glyma17g33360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQEEENQEDPCGESMEENEPKNGVWDCFCIPINWFRMLSREMHWSFVFGVVVVYGISQGLGGALAEVGTKYYMKDVQKVQPSEAQVYKGITSIPWIVKPLWGLLTDVLPFFGYRRRPYFIFAGILGVIAMLLLSLHENLHLMLALLALTAGSAAVAIADVTIDACVAQNSISQPSLAADMQSLCAFSSSVGSLFGYFISGIFVHLLGPMGVFGLMTIPAGLIISVGFLLYEPRMHNTSYTQVKQNFIDAGKAMWTTLRSEDVWGPCLYMYFSLALSLDIREGMFYWYTDSKGGPSFSQESVGFIFSISSGGALLGAILYQYALKDYAFRNLLFWTQLIYGLSGMLDLILVFRLNLKFGIPDYFFVVIVESIAQMTNRLKWMPMLVLSSKLCPSGIEGTFFALLMSIDNVGLLSASWGGGFVLHILRITRTKFDNIWLAILIRNILRIAPLWLLFLVPRADPSSSILPSKNMNSKVAIDTSDIKNVELVSLVHSLEVNS*







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