Glyma17g33120 - SoyBase

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Report for Sequence Feature Glyma17g33120

Feature Type:	gene_model
Chromosome:	Gm17
Start:	36800340
stop:	36809694
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g33120

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G31930	AT	Annotation by Michelle Graham. TAIR10: Mitochondrial glycoprotein family protein \| chr4:15449710-15450804 REVERSE LENGTH=234	SoyBase	E_val: 2.00E-80	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005759	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial matrix	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG2536	KOG	MAM33, mitochondrial matrix glycoprotein	JGI		ISS
PTHR10826	Panther	COMPLEMENT COMPONENT 1	JGI		ISS
PTHR10826:SF1	Panther	COMPLEMENT COMPONENT 1, Q SUBCOMPONENT BINDING PROTEIN RELATED	JGI		ISS
PF02330	PFAM	Mitochondrial glycoprotein	JGI		ISS
UniRef100_D7MAT7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Mitochondrial glycoprotein family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7MAT7_ARALL	SoyBase	E_val: 1.00E-78	ISS
UniRef100_I1MWY2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MWY2_SOYBN	SoyBase	E_val: 2.00E-174	ISS

Expression Patterns of Glyma17g33120

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g33120 not represented in the dataset	Glyma17g33120 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g33120

Paralog	Evidence	Comments
Glyma14g13400	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g33120 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g216700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g33120

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g33120

Limit To All Plant Sequences

>Glyma17g33120.2   sequence type=transcript   gene model=Glyma17g33120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTGGAAGGTCTGAGGCCCACTCTTCTGAATAGTAGAACAGAACATAGAATGTGATGATACTGGCTGGGGAGCAACGATAGAGGCGCCACTCTTCAGCCTTCACAATGGCTTCTTCTCTCATTCGAACGCTCCAAAGAGCTTCTACATCGCTCATTCGAACCCCGAGAGTGTCAAGCGCATGCTTTGCCACGTCGCGTGTCGGAGCCAGAACCTACGCAGCAGAACCAGAACCCGCGACCAAATCGCCCTTTGATTCCAACATCATACGAATTCTCCGAAACGAAATCGAGTATCAAGAAGAATACGCTCCTCCACACCAGCCTGAGACTCAATTCAATTCGTTTACGGTTGAAGAGCGACGTGGGGAGCAAGTGGTCACAATTAAGGGAAAATTTGGGGAATTTGAGGATGTTAAAATTGAGGCTACCATGTTTGATTGGTGTGAGCATGTTCCTGCGTGTGGAGATGATAGTTCTGGGGTAAATATGCGTCTTCACCTTAGTTTAATTGTGGACATAGCAAAAGGGGATGGTGACAGTGAGTTAGAGTTTGTGTGCTCGGCGTGGCCGGATTGTTTGAATGTTGAGAAAGTTTACATGTTAAGGCGTGGCCGGATGGCGGCTAGGCCTTACGTTGGACCTGATTTCAGGTTTGGAAAATGGCATTAACTGTTTTGATTATGTTCATTGCTTCACTGGCCAAATGTTTTGTGTTTAGTGTGTTGTGTCCTATGTCGGTTAAAAGGTTTTAAATTGCGGTCATGATTTTGTTGTGATTCTTGATATTATGGACAAATGAGGCCATGATTGACGATGCAATGTGGTCGTGGAAGCCAAGGTTTTATGTTAGCAATCTCAAGCCCAATAGACCCAAGAGATACTCCACGAGGCCCAAATACCTCAGCGACTTCGTGTAATTTCTCCCAGCCAGATAGTGACAAGGAACAGAATCATCCGCTAGCACTACACCAGATTCCTGTCCCTCCTTGCTGCAGCATTTTGCCATTCTGTTATAGCATTAGCGATTCTGTTAGAATATTTAGCCGACAAGTCTGTTAGTGGCAATTGTTGATGATTACAGCTGGCCCTTGCTCTGTAACGGCCTTTATCCCTGTAATTCAGTATAAATAACAATCAACATCAATGA

>Glyma17g33120.3   sequence type=transcript   gene model=Glyma17g33120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTGGAAGGTCTGAGGCCCACTCTTCTGAATAGTAGAACAGAACATAGAATGTGATGATACTGGCTGGGGAGCAACGATAGAGGCGCCACTCTTCAGCCTTCACAATGGCTTCTTCTCTCATTCGAACGCTCCAAAGAGCTTCTACATCGCTCATTCGAACCCCGAGAGTGTCAAGCGCATGCTTTGCCACGTCGCGTGTCGGAGCCAGAACCTACGCAGCAGAACCAGAACCCGCGACCAAATCGCCCTTTGATTCCAACATCATACGAATTCTCCGAAACGAAATCGAGTATCAAGAAGAATACGCTCCTCCACACCAGCCTGAGACTCAATTCAATTCGTTTACGGTTGAAGAGCGACGTGGGGAGCAAGTGGTCACAATTAAGGGAAAATTTGGGGAATTTGAGGATGTTAAAATTGAGGCTACCATGTTTGATTGGTGTGAGCATGTTCCTGCGTGTGGAGATGATAGTTCTGGGGTAAATATGCGTCTTCACCTTAGTTTAATTGTGGACATAGCAAAAGGGGATGGTGACAGTGAGTTAGAGTTTGTGTGCTCGGCGTGGCCGGATTGTTTGAATGTTGAGAAAGTTTACATGTTAAGGCGTGGCCGGATGGCGGCTAGGCCTTACGTTGGACCTGATTTCAGGGATTTGAAGGCTAAAGTTCAGGAGAAGTTTTACGAGTACTTGGATGTGAGGGGAGTGAATAATGAGCTTGCAGTTTTCTTGCATGAATATATGATGAACAAGGATAGAATTGAGCTTCTGCGGTGGATGGATAGTCTCAAGTCTTTTATGGAAAGATAGATTGAGCATTTCAGCGGACACACCTTTTGGCATATTGGTTGGATCCCTTGTTGAGTGTAAAAACAAATGGTGAAACACCAATGGTCAGACTATTTGAACAACCAAACTTCACCATAACTTGTAATTAAGCTGTTGAAGAACCAATTGTCAAGGTTCATCACTCATTGGATTCTTTCTAAATGGAAATAGGAAATTCCTAGCTAAAATTGAGATTTTTCTCACGAACCAGAATTTCAAATGTGTAGCCATTATTTCACTTAAAGACCTGAAAAGCTTTGGATAGGTGTTTGACAAGGCAAAAGAGTTTGGAGCAGAGTGGTTTCGGAGAGTGGTGGTGAGAAAAGACAGCAACTCATTTGACCATGGTTTGAAATTGATGAGATTAGCCATTGTTTTAGCTTTTAATTTTTTGGTATCTTTTTTATCTGTGCTTATTATGTTGGTGGTGTTCTTCAACCCCATTACGGCTCTGTGCTTTCAGAACATAAATACCAGAGCTTCCAGATTCCATTATAAGAAAAAAAAAGTTACATAAGGAAAAGCTTTAGGGAAGGTGAAGCAGTGACCTCATTTCATAAGTAGTCCTTTGTTTCTATATGGTTTTATACCAATGGCTTGTTTATAGTGCTATAGGCCCATAACTAACAATATTTATCATACAAGGAACTAACACGCACAAGAATAATTTATGTCTGTTCAAACAAAGGATGCCATTTCCTATGTGGTGGTTGTAACTTGTTAGAGCCTTGATCTTGGAAAAGATTTCCACTTTTAAATATGTTAAGACAATCACTCCTTGATC

>Glyma17g33120.4   sequence type=transcript   gene model=Glyma17g33120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTGGAAGGTCTGAGGCCCACTCTTCTGAATAGTAGAACAGAACATAGAATGTGATGATACTGGCTGGGGAGCAACGATAGAGGCGCCACTCTTCAGCCTTCACAATGGCTTCTTCTCTCATTCGAACGCTCCAAAGAGCTTCTACATCGCTCATTCGAACCCCGAGAGTGTCAAGCGCATGCTTTGCCACGTCGCGTGTCGGAGCCAGAACCTACGCAGCAGAACCAGAACCCGCGACCAAATCGCCCTTTGATTCCAACATCATACGAATTCTCCGAAACGAAATCGAGTATCAAGAAGAATACGCTCCTCCACACCAGCCTGAGACTCAATTCAATTCGTTTACGGTTGAAGAGCGACGTGGGGAGCAAGTGGTCACAATTAAGGGAAAATTTGGGGAATTTGAGGATGTTAAAATTGAGGCTACCATGTTTGATTGGTGTGAGCATGTTCCTGCGTGTGGAGATGATAGTTCTGGGGTAAATATGCGTCTTCACCTTAGTTTAATTGTGGACATAGCAAAAGGGGATGGTGACAGTGAGTTAGAGTTTGTGTGCTCGGCGTGGCCGGATTGTTTGAATGTTGAGAAAGTTTACATGTTAAGGCGTGGCCGGATGGCGGCTAGGCCTTACGTTGGACCTGATTTCAGGGATTTGAAGGCTAAAGTTCAGGAGAAGTTTTACGAGTACTTGGATGTGAGGGGAGTGAATAATGAGCTTGCAGTTTTCTTGCATGAATATATGATGAACAAGGATAGAATTGAGCTTCTGCGGTGGATGGATAGTCTCAAGTCTTTTATGGAAAGATAGATTGGTTTTGCGCCATTCGTGTCTTTGTGCTCGTGTGAGGCCTAAACTAAGTGATGTTTTTTCTAAGTTTGCTAATTTGTGGAATGAAGGATGCTTTATGGTGGAAGTGGTTGGTAACTTCAGATCGGGCTGTGTCCACCTTGACATTATTTAATTCTTGGTGTCTTCTGCATCTTGTAGCATCCCATTTTGGTAGGACTTGTAATTGCTTGATGTCTTAGCCTTAGGTCATGATTTGTTGGGATATTGTTTAACATGTGTTTCCATAACTCTTCATTTTAGATAGCACTTTCCATATAAAGCACTATTTGAAGGAGAAATCAGATAGTGCTTTCCTATGGATGCATTATGTTAATAAATAAACTAGATAGTGCTTTTTAATCAAGCGTTGTGCCTATTTGTGTAACTTTCTTTTAAATGACAATAATTCAAGCATAGCACTTTCCAAAGAAAGCATATGTAATGCTTAAACTTGGATAATGCCTTTCTAAAGCAGCGCTATCTAAAAGACTAGTGTTTTCTTTTTTTCCAATAACGCTTTCTTCCAGAAGCACTATCTTGATTGTGTTATATGAATGCATTTCTGGTGTAGTGATTTCCCTTTTGTTTTACATCTTGTTTAAGCTTCTGGTTCTGATGGAAAGTTCATCAATTTCACCATCTTCATTTTTAAAATCATCTAGTGATTCTTTAGCTTTTAGGGCAATGGATGAGAGATGTGCTTTGTATGAAGAAATCTCATGAAAGCATACCCCAAGATGTTCTTTCAAGAACATCTACTTCTGAGCTTGAAAAATTTATAATGTTCTTTGT

Coding sequences of Glyma17g33120

Limit To All Plant Sequences

>Glyma17g33120.1   sequence type=CDS   gene model=Glyma17g33120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCTTCTCTCATTCGAACGCTCCAAAGAGCTTCTACATCGCTCATTCGAACCCCGAGAGTGTCAAGCGCATGCTTTGCCACGTCGCGTGTCGGAGCCAGAACCTACGCAGCAGAACCAGAACCCGCGACCAAATCGCCCTTTGATTCCAACATCATACGAATTCTCCGAAACGAAATCGAGTATCAAGAAGAATACGCTCCTCCACACCAGCCTGAGACTCAATTCAATTCGTTTACGGTTGAAGAGCGACGTGGGGAGCAAGTGGTCACAATTAAGGGAAAATTTGGGGAATTTGAGGATGTTAAAATTGAGGCTACCATGTTTGATTGGTGTGAGCATGTTCCTGCGTGTGGAGATGATAGTTCTGGGGTAAATATGCGTCTTCACCTTAGTTTAATTGTGGACATAGCAAAAGGGGATGGTGACAGTGAGTTAGAGTTTGTGTGCTCGGCGTGGCCGGATTGTTTGAATGTTGAGAAAGTTTACATGTTAAGGCGTGGCCGGATGGCGGCTAGGCCTTACGTTGGACCTGATTTCAGGGATTTGAAGGCTAAAGTTCAGGAGAAGTTTTACGAGTACTTGGATGTGAGGGGAGTGAATAATGAGCTTGCAGTTTTCTTGCATGAATATATGATGAACAAGGATAGAATTGAGCTTCTGCGGTGGATGGATAGTCTCAAGTCTTTTATGGAAAGATAG

>Glyma17g33120.2   sequence type=CDS   gene model=Glyma17g33120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCTTCTCTCATTCGAACGCTCCAAAGAGCTTCTACATCGCTCATTCGAACCCCGAGAGTGTCAAGCGCATGCTTTGCCACGTCGCGTGTCGGAGCCAGAACCTACGCAGCAGAACCAGAACCCGCGACCAAATCGCCCTTTGATTCCAACATCATACGAATTCTCCGAAACGAAATCGAGTATCAAGAAGAATACGCTCCTCCACACCAGCCTGAGACTCAATTCAATTCGTTTACGGTTGAAGAGCGACGTGGGGAGCAAGTGGTCACAATTAAGGGAAAATTTGGGGAATTTGAGGATGTTAAAATTGAGGCTACCATGTTTGATTGGTGTGAGCATGTTCCTGCGTGTGGAGATGATAGTTCTGGGGTAAATATGCGTCTTCACCTTAGTTTAATTGTGGACATAGCAAAAGGGGATGGTGACAGTGAGTTAGAGTTTGTGTGCTCGGCGTGGCCGGATTGTTTGAATGTTGAGAAAGTTTACATGTTAAGGCGTGGCCGGATGGCGGCTAGGCCTTACGTTGGACCTGATTTCAGGTTTGGAAAATGGCATTAA

>Glyma17g33120.3   sequence type=CDS   gene model=Glyma17g33120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCTTCTCTCATTCGAACGCTCCAAAGAGCTTCTACATCGCTCATTCGAACCCCGAGAGTGTCAAGCGCATGCTTTGCCACGTCGCGTGTCGGAGCCAGAACCTACGCAGCAGAACCAGAACCCGCGACCAAATCGCCCTTTGATTCCAACATCATACGAATTCTCCGAAACGAAATCGAGTATCAAGAAGAATACGCTCCTCCACACCAGCCTGAGACTCAATTCAATTCGTTTACGGTTGAAGAGCGACGTGGGGAGCAAGTGGTCACAATTAAGGGAAAATTTGGGGAATTTGAGGATGTTAAAATTGAGGCTACCATGTTTGATTGGTGTGAGCATGTTCCTGCGTGTGGAGATGATAGTTCTGGGGTAAATATGCGTCTTCACCTTAGTTTAATTGTGGACATAGCAAAAGGGGATGGTGACAGTGAGTTAGAGTTTGTGTGCTCGGCGTGGCCGGATTGTTTGAATGTTGAGAAAGTTTACATGTTAAGGCGTGGCCGGATGGCGGCTAGGCCTTACGTTGGACCTGATTTCAGGGATTTGAAGGCTAAAGTTCAGGAGAAGTTTTACGAGTACTTGGATGTGAGGGGAGTGAATAATGAGCTTGCAGTTTTCTTGCATGAATATATGATGAACAAGGATAGAATTGAGCTTCTGCGGTGGATGGATAGTCTCAAGTCTTTTATGGAAAGATAG

>Glyma17g33120.4   sequence type=CDS   gene model=Glyma17g33120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCTTCTCTCATTCGAACGCTCCAAAGAGCTTCTACATCGCTCATTCGAACCCCGAGAGTGTCAAGCGCATGCTTTGCCACGTCGCGTGTCGGAGCCAGAACCTACGCAGCAGAACCAGAACCCGCGACCAAATCGCCCTTTGATTCCAACATCATACGAATTCTCCGAAACGAAATCGAGTATCAAGAAGAATACGCTCCTCCACACCAGCCTGAGACTCAATTCAATTCGTTTACGGTTGAAGAGCGACGTGGGGAGCAAGTGGTCACAATTAAGGGAAAATTTGGGGAATTTGAGGATGTTAAAATTGAGGCTACCATGTTTGATTGGTGTGAGCATGTTCCTGCGTGTGGAGATGATAGTTCTGGGGTAAATATGCGTCTTCACCTTAGTTTAATTGTGGACATAGCAAAAGGGGATGGTGACAGTGAGTTAGAGTTTGTGTGCTCGGCGTGGCCGGATTGTTTGAATGTTGAGAAAGTTTACATGTTAAGGCGTGGCCGGATGGCGGCTAGGCCTTACGTTGGACCTGATTTCAGGGATTTGAAGGCTAAAGTTCAGGAGAAGTTTTACGAGTACTTGGATGTGAGGGGAGTGAATAATGAGCTTGCAGTTTTCTTGCATGAATATATGATGAACAAGGATAGAATTGAGCTTCTGCGGTGGATGGATAGTCTCAAGTCTTTTATGGAAAGATAG

Predicted protein sequences of Glyma17g33120

Limit To All Plant Sequences

>Glyma17g33120.1   sequence type=predicted peptide   gene model=Glyma17g33120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSLIRTLQRASTSLIRTPRVSSACFATSRVGARTYAAEPEPATKSPFDSNIIRILRNEIEYQEEYAPPHQPETQFNSFTVEERRGEQVVTIKGKFGEFEDVKIEATMFDWCEHVPACGDDSSGVNMRLHLSLIVDIAKGDGDSELEFVCSAWPDCLNVEKVYMLRRGRMAARPYVGPDFRDLKAKVQEKFYEYLDVRGVNNELAVFLHEYMMNKDRIELLRWMDSLKSFMER*

>Glyma17g33120.2   sequence type=predicted peptide   gene model=Glyma17g33120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSLIRTLQRASTSLIRTPRVSSACFATSRVGARTYAAEPEPATKSPFDSNIIRILRNEIEYQEEYAPPHQPETQFNSFTVEERRGEQVVTIKGKFGEFEDVKIEATMFDWCEHVPACGDDSSGVNMRLHLSLIVDIAKGDGDSELEFVCSAWPDCLNVEKVYMLRRGRMAARPYVGPDFRFGKWH*

>Glyma17g33120.3   sequence type=predicted peptide   gene model=Glyma17g33120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSLIRTLQRASTSLIRTPRVSSACFATSRVGARTYAAEPEPATKSPFDSNIIRILRNEIEYQEEYAPPHQPETQFNSFTVEERRGEQVVTIKGKFGEFEDVKIEATMFDWCEHVPACGDDSSGVNMRLHLSLIVDIAKGDGDSELEFVCSAWPDCLNVEKVYMLRRGRMAARPYVGPDFRDLKAKVQEKFYEYLDVRGVNNELAVFLHEYMMNKDRIELLRWMDSLKSFMER*

>Glyma17g33120.4   sequence type=predicted peptide   gene model=Glyma17g33120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSLIRTLQRASTSLIRTPRVSSACFATSRVGARTYAAEPEPATKSPFDSNIIRILRNEIEYQEEYAPPHQPETQFNSFTVEERRGEQVVTIKGKFGEFEDVKIEATMFDWCEHVPACGDDSSGVNMRLHLSLIVDIAKGDGDSELEFVCSAWPDCLNVEKVYMLRRGRMAARPYVGPDFRDLKAKVQEKFYEYLDVRGVNNELAVFLHEYMMNKDRIELLRWMDSLKSFMER*

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