SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G11040 | AT | Annotation by Michelle Graham. TAIR10: TRS120 | chr5:3495332-3500610 FORWARD LENGTH=1186 | SoyBase | E_val: 0 | ISS |
| GO:0000910 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytokinesis | SoyBase | N/A | ISS |
| GO:0000919 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell plate assembly | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG1953 | KOG | Targeting complex (TRAPP) subunit | JGI | ISS | |
| PTHR21512 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR21512:SF5 | Panther | gb def: Hypothetical protein T5K6 30 | JGI | ISS | |
| PF08626 | PFAM | Transport protein Trs120 | JGI | ISS | |
| UniRef100_Q9FY61 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein TRS120 n=1 Tax=Arabidopsis thaliana RepID=Q9FY61_ARATH | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233E0BC | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233E0BC related cluster n=1 Tax=unknown RepID=UPI000233E0BC | SoyBase | E_val: 0 | ISS |
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Glyma17g33020 not represented in the dataset |
Glyma17g33020 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma14g13540 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g215700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g33020.1 sequence type=CDS gene model=Glyma17g33020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGCCGGAAGTGAGCATCGAGGGATCGGCGATGATCCAGGTGGCGGTGGTTCCAATCGGAGCGGTGCCGGCGAACGTGCTGCGGGACTACTACTCTATGCTGCTCCCGCTGCACACGATCCCGCTCTCCGCGATCAGCTCCTTCTACACCGAGCACCAGAAGTCCCCCTTCGCCGTCCAGCCCTGGGACTCCGGCTCCCTCCGCTTCAAGTTCGTCCTCGGTGGCGCGCCGCCGAGTCCATGGGAGGACTTCCAGTCGCACCGCAAAACCCTCGCCATCGTCGGCGTCGTCCACTGCCCCTCCTCCCCCGATCTCGAAGCCGTCGTCGACGTCTTCGCCAGTGCCTGCAAGTCCTTCCCTTCCTCCCTCGTCGATCGCTGTTTCGCCTTCTGCCCAAACGATACGCAGCTTGAGGATGGAAGTAAGAAAGGTGGGAATTTGAGGTTGTTTCCTCCTGCGGATCGTCCGACTTTGGAGTTCCACTTGAATACTATGATGCAAGAGATCGCTGCGTCGCTGCTTATGGAGTTTGAGAAATGGGTACTTCAAGCAGAATCTTCTGGAACCATTCTCAAGACGCCTTTAGATTCTCAAGCTAGTCTCAGCTCAGAGGAGGTTATCAAGGCCAAAAAGAGAAGGCTTGGGCGTGCCCAGAAGACCATTGGTGATTACTGTTTGCTGGCTGGGTCCCCCGTTGATGCCAATGCTCATTATTCTACTGCATTGGAACTTTCGAGGTTAACTGGTGATTACTTCTGGTATGCTGGAGCATTGGAGGGTAGTGTTTGTGCCTTGCTGATTGACCGTATGGGCCAGAAAGATTCAGTCCTGGAAGACGAAGTTAGATATCGTTATAATAGTGTCATCTTGAATTACAAGAAGTCACAAGATAATGCTCAGCGAGTTTCTCCCCTAACTTTTGAACTTGAAGCTACTTTGAAATTAGCAAGGTTTCTTTGCAGGAGAGAGCTGGCCAAGGAGGTGGTGGAGTTGTTGACCACTGCTGCAGATGGTGCTAAATCTTTAATCGATGCAAGTGATAAGCTCATATTATATATTGAAATAGCTCGTCTGTATGGAAGTCTTGGATACCAAAGAAAAGCTGCATTCTTCTCAAGGCAGGTTGCACAGTTATATCTGCAGCAAGAAAATAGACTGGCTGCAATTAGTGCTATGCAAGTTTTGGCAATGACCACAAAAGCTTATCATGTTCAAAGTAGATCATCAATCTCTGATCATTCTTTGCACAGTAAGGGAATTGTATCAAATAATGCTGATAGTGGGAAAACATATCACCAATCAGCAGTCTCACTATTTGAGTCTCAATGGAGTACCCTCCAGATGGTTGTGTTAAGAGAAATTCTGCTCTCTGCTGTCCGTGCTGGTGATCCTCTTACTGCATGGAGTGCAGCAGCACGACTTCTTAGGTCCTACTATCCTCTAATAACACCTGCTGGGCAAAATGGCCTTGCTAATGCACTTTCAAATTCAGCTGAGAGGCTGCCACCAGGGACTCGTTGTGCTGATCCTGCTTTACCCTTTGTGAGGCTGCATTCCTTTCCTCTCCACCCAACACAAATGGACATAATAAAGCGTAGTACTGCTAGAGAAGACTGGTGGGCGGGTGCTGCTCCTTCAGGCCCTTTCATTTATACACCATTCAGTAAAGGAGAGCCTAATAATATCAAGAAGCAAGAGCTTATTTGGATTGTTGGAGAGCCTGTTGAGGTCTTGGTGGAATTGGCAAACCCATGTGGCTTTGATTTAAGGGTTGATAGCATCTATCTATCTGTGCATTCTGGAAATTTTGATGCCTTCCCTGTGAGTGTAAGCCTTCTACCAAATTCTTCAAAAGTGATCTCCTTATCTGGCATTCCAACATCAGTGGGGCCAGTTTCAATTCCTGGGTGCATTGCTCATTGTTTTGGTGTTATTACTGAACATCTGTTTAAAGAGGTTGACAATCTGCTTCTTGGGGCCTCACAAGGGCTGGTCCTTTCTGACCCTTTTCGATGCTGTGGATCTCCTAAGCTTAAGAATGTGCCTGTTCCTAGTATTTCTGTAGTACCACCACTTCCATTGTTGATATCACATGTTGTTGGAGGTGATGGTGCCATCATTTTGTATGAAGGCGAAATTCGTGATGTGTGGATACGCCTGGCTAATGCAGGTACTGTTCCAATTGAGCAGGCCCATATTTCCCTGTCAGGGAAAAACCAAGATTCTGTAATTTCATATTCTTCTGAGACTTTAAAATCTTGCCTCCCTTTAAGGCCTGGAGCAGAAGTTACATTCCCTGTGACCTTGAGAGCCTGGCAGGTTGGCTTGGTGGATGCTGATGCTGGTGCAGGGAAGACTGTCTCTGGGAACAATATGAGGCATTCCAAAGATGGAAGCAGCCCATCACTGTTGATCCACTATGCTGGTCCAATGAAAACCTCTGAAGATACTCCAACAAATGGATCTACTGTGCCCCCTGGCAGACGCCTTGTTGTTCCACTGCAGATTTGTGTTTTGCAGGGTTTGTCTTTTGTGAAGGCTCAGCTTCTTTCAATGGAGTTTCCTGCTCATGTCGGTGAAACTCTTCCGAAGTTGGATGACTTAAATAACAAGTCTACTGATGTTGAATCAGAAACAAAAATGGACAGATTGGTGAAAATAGATCCTTTCAGAGGAAGTTGGGGACTGCGATTCCTTGAACTTGAGTTATCTAATCCAACTGATGTCGTGTTTGAAATCAATGTCTCTGTCAAACTGGAGAACTCTAGCAACGAGGACAATCATTTTGCTGATCAGGGTGCTACAGAATATGTCTATCCTAAAACAAGAATTGATAGAGATTGCTCAGCCAGGGTTCTAGTGCCTCTTGAGCATTTTAAATTACCTGTTCTTGATGACTCCTTTTTTATGAAGGACTCACAAGCAGATGGGAATGGCGGAGGAAGAAATGCATCCTTTTCTGAAAAGAACACCAAAGCTGAACTCAATGCTTGTATCAAGAACCTTATATCCAGGATTAAGGTTCAATGGCATTCAGGACGGAATAGCTCTGGAGAGTTAAATATCAAGGAAGCTATCCTGGCAGCTCTCCAAACTTCGGTCATGGATGTTTTACTGCCGGATCCATTGACATTTGGCTTCAGGCTTGTTAGAGATGGTTCTGAATCAGGAAAACCTTATTCTGATAAAGATTCTGAATTAGTTGAATCTCCTGCTTCCAAAGGTTCTGTGATTGCACATGAAATGACACCAATGGAAGTTCTGGTTCGCAATAACACCAAGGATATGATCAAAATGAGTCTTAATATTACATGCAGAGATGTAGCTGGGGAAAATTGTGTAGATGGTACCAAAGCAACTGTTCTATGGACTGGTGTTCTGAGTGATATTACTATGGAAATTCCCCCACTTCAACAAATTAAACACTCTTTCTGCCTACATTTTCTTGTCCCCGGAGAGTATACATTACTTGCTGCAGCAGTGATTGATGATGCAAATGACATTCTTCGAGCTCGTGCAAAGACCACTTCAGCTGCTGAGCCAATTTTCTGTCGTGGACCACCATATCATGTTCGTGTTCTTGGGACTGCCTGA
>Glyma17g33020.1 sequence type=predicted peptide gene model=Glyma17g33020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEPEVSIEGSAMIQVAVVPIGAVPANVLRDYYSMLLPLHTIPLSAISSFYTEHQKSPFAVQPWDSGSLRFKFVLGGAPPSPWEDFQSHRKTLAIVGVVHCPSSPDLEAVVDVFASACKSFPSSLVDRCFAFCPNDTQLEDGSKKGGNLRLFPPADRPTLEFHLNTMMQEIAASLLMEFEKWVLQAESSGTILKTPLDSQASLSSEEVIKAKKRRLGRAQKTIGDYCLLAGSPVDANAHYSTALELSRLTGDYFWYAGALEGSVCALLIDRMGQKDSVLEDEVRYRYNSVILNYKKSQDNAQRVSPLTFELEATLKLARFLCRRELAKEVVELLTTAADGAKSLIDASDKLILYIEIARLYGSLGYQRKAAFFSRQVAQLYLQQENRLAAISAMQVLAMTTKAYHVQSRSSISDHSLHSKGIVSNNADSGKTYHQSAVSLFESQWSTLQMVVLREILLSAVRAGDPLTAWSAAARLLRSYYPLITPAGQNGLANALSNSAERLPPGTRCADPALPFVRLHSFPLHPTQMDIIKRSTAREDWWAGAAPSGPFIYTPFSKGEPNNIKKQELIWIVGEPVEVLVELANPCGFDLRVDSIYLSVHSGNFDAFPVSVSLLPNSSKVISLSGIPTSVGPVSIPGCIAHCFGVITEHLFKEVDNLLLGASQGLVLSDPFRCCGSPKLKNVPVPSISVVPPLPLLISHVVGGDGAIILYEGEIRDVWIRLANAGTVPIEQAHISLSGKNQDSVISYSSETLKSCLPLRPGAEVTFPVTLRAWQVGLVDADAGAGKTVSGNNMRHSKDGSSPSLLIHYAGPMKTSEDTPTNGSTVPPGRRLVVPLQICVLQGLSFVKAQLLSMEFPAHVGETLPKLDDLNNKSTDVESETKMDRLVKIDPFRGSWGLRFLELELSNPTDVVFEINVSVKLENSSNEDNHFADQGATEYVYPKTRIDRDCSARVLVPLEHFKLPVLDDSFFMKDSQADGNGGGRNASFSEKNTKAELNACIKNLISRIKVQWHSGRNSSGELNIKEAILAALQTSVMDVLLPDPLTFGFRLVRDGSESGKPYSDKDSELVESPASKGSVIAHEMTPMEVLVRNNTKDMIKMSLNITCRDVAGENCVDGTKATVLWTGVLSDITMEIPPLQQIKHSFCLHFLVPGEYTLLAAAVIDDANDILRARAKTTSAAEPIFCRGPPYHVRVLGTA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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