Report for Sequence Feature Glyma17g32040
Feature Type: gene_model
Chromosome: Gm17
Start: 35254927
stop: 35259696
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma17g32040
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G32270 AT
Annotation by Michelle Graham. TAIR10: Ubiquitin-like superfamily protein | chr4:15575015-15576360 REVERSE LENGTH=239
SoyBase E_val: 1.00E-50 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PTHR14942 Panther
FAMILY NOT NAMED
JGI ISS
UniRef100_G7I716 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: U11/U12 small nuclear ribonucleoprotein 25 kDa protein n=1 Tax=Medicago truncatula RepID=G7I716_MEDTR
SoyBase E_val: 3.00E-96 ISS
UniRef100_I1MWT0 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MWT0_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma17g32040
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma17g32040
Paralog Evidence Comments
Glyma14g14350 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma17g32040 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.17g211600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma17g32040
Coding sequences of Glyma17g32040
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma17g32040.1 sequence type=CDS gene model=Glyma17g32040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCCACCGAGCACGAAAAGCAGTTAATTGTGGCCAAACCGAACCCTAACACCAAAAGCCCTCGCCGATCCTCCACCTCTTCCTCGCTCGCCATCATCGACGGCATTTTCGCGAGAAAAAGCTTCTTCTACGACAGGCTTCCCTCCCAACCACTCAGACTCACCGTTCTCAAACTCGACGGTTCCTGCTTCCATATTCAAGTTTCGAAGACCGCCACCGTTGCGGAACTGAAGGACGCAGTGGAGGCCGTGTTCAGTCACGTGCCTCACAAGGGGCCTGCCAAAATTTCATGGGCACATGTCTGGGGGCAGTTTTGCTTATGCTATGATGGACAGAAGCTAGTTACAGAAAAGGATAATCTTCGAAATTATGGTATCAAGGATGGTGACCAGCTTCGTTTCATCCGCCATGTTACAAACAATTGCTGTGTTCAAAGAAAGCGGTTGAAGAAAAGAGTTGTCTATTTGAAACAACACAGGAGGTCATCGCAAGTGGATGGCTATCAACCCAAAGGAAATTGTGATGATGATGAGATTGGTTCTGATGATGAAGCCACAGATAATGGGAAGATCAAGCACCATATTGAAGAAGAGGAAGAAGAAGAAAGAGAAGAAGAGTGTGTTGGAAAGAACAAATTAGCTGGCTTTTTGGGAGAGCTGTTTTCATACACTCCACTGGCAGTTGTGAGAAGAACTAGAACTAAAAGCAAGATTTGGCCAACAACTATGCCCAAATGTATACTTGGTAGTTTTAGAAAGATTAGAAGTATTGTATGCTTTGGCAGGAAGAGGCACTATTCTCGGAGACTTCCATGGAGACCGCATTAA
Predicted protein sequences of Glyma17g32040
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma17g32040.1 sequence type=predicted peptide gene model=Glyma17g32040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MATEHEKQLIVAKPNPNTKSPRRSSTSSSLAIIDGIFARKSFFYDRLPSQPLRLTVLKLDGSCFHIQVSKTATVAELKDAVEAVFSHVPHKGPAKISWAHVWGQFCLCYDGQKLVTEKDNLRNYGIKDGDQLRFIRHVTNNCCVQRKRLKKRVVYLKQHRRSSQVDGYQPKGNCDDDEIGSDDEATDNGKIKHHIEEEEEEEREEECVGKNKLAGFLGELFSYTPLAVVRRTRTKSKIWPTTMPKCILGSFRKIRSIVCFGRKRHYSRRLPWRPH*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
