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Report for Sequence Feature Glyma17g31940

Feature Type:gene_model
Chromosome:Gm17
Start:35143570
stop:35147285
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g31940
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G25490AT Annotation by Michelle Graham. TAIR10: EIN3-binding F box protein 1 | chr2:10848018-10850275 REVERSE LENGTH=628 SoyBaseE_val: 0ISS
GO:0006511GO-bp Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process SoyBaseN/AISS
GO:0009723GO-bp Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus SoyBaseN/AISS
GO:0010105GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of ethylene mediated signaling pathway SoyBaseN/AISS
GO:0042752GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of circadian rhythm SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0004842GO-mf Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
KOG1947 KOG Leucine rich repeat proteins, some proteins contain F-box JGI ISS
PTHR23125Panther F-BOX/LEUCINE RICH REPEAT PROTEIN JGI ISS
PTHR23125:SF107Panther EBF2 (EIN3-BINDING F BOX PROTEIN 2) JGI ISS
PF00646PFAM F-box domain JGI ISS
UniRef100_G7I706UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ein3-binding f-box protein n=1 Tax=Medicago truncatula RepID=G7I706_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1MWS3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MWS3_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma17g31940
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g31940
ParalogEvidenceComments
Glyma14g14410 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g31940 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g211000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g31940
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma17g31940
>Glyma17g31940.1   sequence type=CDS   gene model=Glyma17g31940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCAAAGTTCTCGGCTTTTCCGGAGTTGACGATTTTTGCCCGATGGGATCAATATATGCCAACCCCAAGGAAGCAAGTTTCTTCTTGCCTCTTGGCCCTCAAGTTGATGTATACTTTCCTCCTCGGAAGAGATCGCGTGTCAACACTCCATTCGTTTTCGATGGAGAATGGTTTGAGCAAAAGCCGAAAACCTCTGTTGAAGCCTTGCCAGATGAGTGTCTCTTTGAGATCTTTAGGAGGTTGCCTTCTGGGGAAGACAGGAGTGCATGTGCCTGTGTTTCCAAGCGATGGCTTATGCTTCTAAGCAGTATTTGCAAAAATGAAATCTGTGTTAACAAAAATGCCACTGTAGAGACCATTGAAAAGGAGGGTGATGATGTAGAATTTGGAGGTGAGGGATATCTCTCTCGAAGCTTGGAAGGAAAGAAGGCAACAGATGTTAGACTAGCTGCCATAGCTGTTGGGACTTCGTCTCGGGGAGGATTGGGGAAGCTCTCAATCCGTGGAAGCAACATGGTTCGTGGGGTGACTAGTCATGGTCTCAAGGCTGTTGCTCGTGGATGCCCTTCTTTGAAGGCTCTTTCTCTATGGAATGTTGCTACCGTTGGTGATGAGGGCCTAATTGAGATTGCTAATGGATGCCACCAGCTAGAGAAGCTTGACCTTTGCAAGTGCCCTGCAATTACTGATAAGGCTTTGGTTGCAATTGCAAAGAACTGCCAGAATCTGACTGAGTTGTCATTTGAATCTTGCCCTAACATTGGTAATGAAGGTCTACGAGCTATTGGGAAGTTATGCTCCAATCTGAAGTCCATATCCATCAAGGACTGCACTGGTGTTAGTGATCACGGAATTGCTGGATTGCTTTCTTCAACTTCTTTGGTTCTATCAAAGGTGAAGCTCCAGGCATTGACTGTTTCAGATCTCTCTCTAGCTGTTATTGGTCATTATGGCAAGTCAGTTACTGATCTTGTCCTTAATTGCCTCCCAAATGTCAGCGAGAGGGGGTTCTGGGTCATGGGTAATGGTAATGGATTGCAGAAGCTAAAATCACTTACAGTTGCATCTTGCAAAGGAGTAACAGATATTGGGCTTGAAGCTGTAGGAAAGGGTTGTCCAAATCTGAAAATTGCACACCTCCACAAGTGTGCATTTCTGTCAGACAATGGGTTGATGTCATTCGCCAAGGCTGCTTCATCACTTGAAAGCCTACGATTGGAAGAGTGCCACAGAATTACCCAACTTGGGTTTTTTGGTGTCCTTTTTAACTGTGGTGCAAAATTGAAGGCTATCTCTTTGGTGAGCTGCTATGGGATCAAAGATCTGAACTTGGTGTTGCCAACAGTATCTCCATGTGAATCACTTCGGTCGTTGTCTATCAGTAACTGTTCTGGATTTGGCAACGCCTCCCTGTCTGTATTGGGAAAGCTGTGCCCTCAGCTTCAGCATGTTGAATTGAGTGGACTTGAGGGAGTGACAGATGCAGGGCTTCTTCCACTCCTTGAGAGTTCCGAGGCTGGTTTGGTTAAAGTGAACCTTAGTGGTTGCACAAACATTACCGACAAAGTAGTTTCATCCTTGGCCAATCTGCATGGTTGGACTCTTGAGAATCTAAACCTTGATGGTTGCAAAAATATCAGTGATGCTAGCTTGATGGCAATTGCTGAAAACTGTGCATTGCTATGTGATCTTGATGTCTCCAAGTGCACAATCACTGATGCTGGGATTGCAGTCCTGGCACATGCCGAACAGATTAATCTGCAAATTCCTTTCTTTGTCAGGTTGCACTTTGGTCTCAGACAGGAGCTTAACCGCTCTGAGAAAAATTAG
Predicted protein sequences of Glyma17g31940
>Glyma17g31940.1   sequence type=predicted peptide   gene model=Glyma17g31940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSKVLGFSGVDDFCPMGSIYANPKEASFFLPLGPQVDVYFPPRKRSRVNTPFVFDGEWFEQKPKTSVEALPDECLFEIFRRLPSGEDRSACACVSKRWLMLLSSICKNEICVNKNATVETIEKEGDDVEFGGEGYLSRSLEGKKATDVRLAAIAVGTSSRGGLGKLSIRGSNMVRGVTSHGLKAVARGCPSLKALSLWNVATVGDEGLIEIANGCHQLEKLDLCKCPAITDKALVAIAKNCQNLTELSFESCPNIGNEGLRAIGKLCSNLKSISIKDCTGVSDHGIAGLLSSTSLVLSKVKLQALTVSDLSLAVIGHYGKSVTDLVLNCLPNVSERGFWVMGNGNGLQKLKSLTVASCKGVTDIGLEAVGKGCPNLKIAHLHKCAFLSDNGLMSFAKAASSLESLRLEECHRITQLGFFGVLFNCGAKLKAISLVSCYGIKDLNLVLPTVSPCESLRSLSISNCSGFGNASLSVLGKLCPQLQHVELSGLEGVTDAGLLPLLESSEAGLVKVNLSGCTNITDKVVSSLANLHGWTLENLNLDGCKNISDASLMAIAENCALLCDLDVSKCTITDAGIAVLAHAEQINLQIPFFVRLHFGLRQELNRSEKN*






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