Glyma17g31920 - SoyBase

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Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma17g31920

Feature Type:	gene_model
Chromosome:	Gm17
Start:	35110417
stop:	35117700
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g31920

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G25360	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32342.1). \| chr5:8799934-8802333 REVERSE LENGTH=169	SoyBase	E_val: 2.00E-52	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1MWS2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MWS2_SOYBN	SoyBase	E_val: 1.00E-97	ISS

Expression Patterns of Glyma17g31920

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g31920

Paralog	Evidence	Comments
Glyma14g14441	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g31920 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g210800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g31920

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g31920

Limit To All Plant Sequences

>Glyma17g31920.4   sequence type=transcript   gene model=Glyma17g31920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCCGGCCCTCCTTTCTTTTCTTTTATTAAAGTCTAAGAAATTCTCTACCTTTTTTAATTTTTTAATACTATTAATCTGCATGCAGCATTGAATTCTCCTCCTTCACGAATTCAGAATTATTTGTGACAATTCACTTCTTCTTTGACTTATGCAAATGCATTTCTGTAGGTACATTCCACCTTTGGTCTTTGGCGTGCATGGGGCGAGTTCTTTGCTCTCTTTGTTGTCTTGTCTTCGTTTGGCAGCTGGAAAAAAAAAAAACTGAATTTTACATTTGAACTTGACTTTTTTTGTCCCACTTATTACTTAATCTGCAAGGAAATGACTTTTCCAATGTATTATTTATAATTGTATAATCTTGTTTCACTAAGTGAGTTTTGAGGTTATGTCTAGCAATGAGTGAAAATGAGTGCAATATGAAAGATCCAAAGTCACTAGTAGTTGTCTTGATTAAGAACATAGGTTGTCTTGGATGCTGCAAAAAAACTCCAGTAATTATTTCAATGGATGAAGCATCTAAAGGACTAAGAACTCAAGGTCAAACAGTGAGTAAAGTGGATGGATCAGAAGATTTCTGGAGCAGCAGCACCTTTGAGTTAGACCATAGTGCTGCTCATTCACAGAGAAGCATCTCGTCAATCGGAATGCCAAATAATCCTTCTGATTCTCAGTGTAGTGGAGGCAGTCAAAGTGGTGCTCCTGAATTTGTCAACCATGGGCTTCTTCTTTGGAACCAGATAAGGCAACAATGGGTTGGAAACAAAAGGTCTGAGAGTATCGCAGAAATTCAAGAACCAAGAATAAGTTCCAATGCCAACTACGACAACCTACTTGGGAACAACAAACCCTATCCCCAACGCATTCCTCTGAGAGAAATGATTGACTTTCTTGTTGATATTTGGGAGCAAGAGGGTCTGTATGACTGATCAAGCAAAATAGTCAATTTATTTTTCCAAAGATTTTGGAGGAGAGGTGATGTCGAATTTGTTTGTTGTCCTACTGGATAGCTGTGAATGGAGTAACTTACAAATCTTCTCTTTCAGTGGTTTCTTTCCTATTTTTAAATACGTTAGATTAAATTGTATAATTCTTCCTGGGTTTTTGGCTGAAGTGATTTACAGACAAATTATCTGAGGCAAAAGGGAAAATTTCAAGCTTAAGCTAGCTTCTAATAGTCTAAATGCTAGTATTTAAGAGCTAATGTTTCTTGTTCTTGTTGAGAAAATTTTATTCTGAGTATTATTACTT

>Glyma17g31920.5   sequence type=transcript   gene model=Glyma17g31920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTGTTAGCACCATTGGTTAGATGCTTTGGGAAGAAACCCCAGTGCCCCTCATTTTTTGTGTTTTGTGGTGCCTGGTTTCGTGTTCTTGTGTTTTCTTCCATGGATAAGTTAAAGCTCAAATGCAAGGGGATTTTCTGTGTAAGAGAGACTTATTTTATGCTACTTTTAATTTCAGGAATTTTGTTGTTACATTAGTTGCAGACATATTTCTTTTTCTCTTTTTTTTCCACTTATTTGAGAAGGCAATAAGGTTTTAATTGTGTACCTGATTGCATAGTTTTGTGCCCTTAAGGATTCACACACCCTTTTTTGCTTCTATCTTGGTGTCAAAGTGTATCTTTTTTTCTTAAACACATCATGCTTAGGCTCCTTTTTTTCCCTATTTGTTTCCCTTGATTTCATGTTAAAAACAGTTGATACATCATCACTAACAGTGCATGATAGCAACTTATTCTAGATTTTCTTTTACTATAGTGCTTGTGTATATCTATAACAGGTTTGTTTCAATTTATTCTTGATGTCACGTTAAAACAGTTGATACATTATCACTAACAGTGTATGATAGCAACTTATTCTAGATTTGCTTTTACTATAGTGCTTGTGTATATCTATAACAGGTTTGTTTCAATTTATTCTTGATGTCATGTTAAAATAGTTGATGCATCACTACCTGTTACTGTTCTAGGCACAGGTTTGTTTCAACTTATTCTTGCTCAAATGTAAATTCAGAACATAGGTTGTCTTGGATGCTGCAAAAAAACTCCAGTAATTATTTCAATGGATGAAGCATCTAAAGGACTAAGAACTCAAGGTCAAACAGTGAGTAAAGTGGATGGATCAGAAGATTTCTGGAGCAGCAGCACCTTTGAGTTAGACCATAGTGCTGCTCATTCACAGAGAAGCATCTCGTCAATCGGAATGCCAAATAATCCTTCTGATTCTCAGTGTAGTGGAGGCAGTCAAAGTGGTGCTCCTGAATTTGTCAACCATGGGCTTCTTCTTTGGAACCAGATAAGGCAACAATGGGTTGGAAACAAAAGGTCTGAGAGTATCGCAGAAATTCAAGAACCAAGAATAAGTTCCAATGCCAACTACGACAACCTACTTGGGAACAACAAACCCTATCCCCAACGCATTCCTCTGAGAGAAATGATTGACTTTCTTGTTGATATTTGGGAGCAAGAGGGTCTGTATGACTGATCAAGCAAAATAGTCAATTTATTTTTCCAAAGATTTTGGAGGAGAGGTGATGTCGAATTTGTTTGTTGTCCTACTGGATAGCTGTGAATGGAGTAACTTACAAATCTTCTCTTTCAGTGGTTTCTTTCCTATTTTTAAATACGTTAGATTAAATTGTATAATTCTTCCTGGGTTTTTGGCTGAAGTGATTTACAGACAAATTATCTGAGGCAAAAGGGAAAATTTCAAGCTTAAGCTAGCTTCTAATAGTCTAAATGCTAGTATTTAAGAGCTAATGTTTCTTGTTCTTGTTGAGAAAATTTTATTCTGAGTATTATTACTT

>Glyma17g31920.6   sequence type=transcript   gene model=Glyma17g31920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GATGTCATGTTAAAATAGTTGATGCATCACTACCTGTTACTGTTCTAGGCACAGAACATAGGTTGTCTTGGATGCTGCAAAAAAACTCCAGTAATTATTTCAATGGATGAAGCATCTAAAGGACTAAGAACTCAAGGTCAAACAGTGAGTAAAGTGGATGGATCAGAAGATTTCTGGAGCAGCAGCACCTTTGAGTTAGACCATAGTGCTGCTCATTCACAGAGAAGCATCTCGTCAATCGGAATGCCAAATAATCCTTCTGATTCTCAGTGTAGTGGAGGCAGTCAAAGTGGTGCTCCTGAATTTGTCAACCATGGGCTTCTTCTTTGGAACCAGATAAGGCAACAATGGGTTGGAAACAAAAGGTCTGAGAGTATCGCAGAAATTCAAGAACCAAGAATAAGTTCCAATGCCAACTACGACAACCTACTTGGGAACAACAAACCCTATCCCCAACGCATTCCTCTGAGAGAAATGATTGACTTTCTTGTTGATATTTGGGAGCAAGAGGGTCTGTATGACTGATCAAGCAAAATAGTCAATTTATTTTTCCAAAGATTTTGGAGGAGAGGTGATGTCGAATTTGTTTGTTGTCCTACTGGATAGCTGTGAATGGAGTAACTTACAAATCTTCTCTTTCAGTGGTTTCTTTCCTATTTTTAAATACGTTAGATTAAATTGTATAATTCTTCCTGGGTTTTTGGCTGAAGTGATTTACAGACAAATTATCTGAGGCAAAAGGGAAAATTTCAAGCTTAAGCTAGCTTCTAATAGTCTAAATGCTAGTATTTAAGAGCTAATGTTTCTTGTTCTTGTTGAGAAAATTTTATTCTGAGTATTATTACTT

>Glyma17g31920.7   sequence type=transcript   gene model=Glyma17g31920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGTTGGTTTTAATCATACTTATGTCTTAACCTGCTTTACAACAGAACATAGGTTGTCTTGGATGCTGCAAAAAAACTCCAGTAATTATTTCAATGGATGAAGCATCTAAAGGACTAAGAACTCAAGGTCAAACAGTGAGTAAAGTGGATGGATCAGAAGATTTCTGGAGCAGCAGCACCTTTGAGTTAGACCATAGTGCTGCTCATTCACAGAGAAGCATCTCGTCAATCGGAATGCCAAATAATCCTTCTGATTCTCAGTGTAGTGGAGGCAGTCAAAGTGGTGCTCCTGAATTTGTCAACCATGGGCTTCTTCTTTGGAACCAGATAAGGCAACAATGGGTTGGAAACAAAAGGTCTGAGAGTATCGCAGAAATTCAAGAACCAAGAATAAGTTCCAATGCCAACTACGACAACCTACTTGGGAACAACAAACCCTATCCCCAACGCATTCCTCTGAGAGAAATGATTGACTTTCTTGTTGATATTTGGGAGCAAGAGGGTCTGTATGACTGATCAAGCAAAATAGTCAATTTATTTTTCCAAAGATTTTGGAGGAGAGGTGATGTCGAATTTGTTTGTTGTCCTACTGGATAGCTGTGAATGGAGTAACTTACAAATCTTCTCTTTCAGTGGTTTCTTTCCTATTTTTAAATACGTTAGATTAAATTGTATAATTCTTCCTGGGTTTTTGGCTGAAGTGATTTACAGACAAATTATCTGAGGCAAAAGGGAAAATTTCAAGCTTAAGCTAGCTTCTAATAGTCTAAATGCTAGTATTTAAGAGCTAATGTTTCTTGTTCTTGTTGAGAAAATTTTATTCTGAGTATTATTACTT

Coding sequences of Glyma17g31920

Limit To All Plant Sequences

>Glyma17g31920.3   sequence type=CDS   gene model=Glyma17g31920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTATTCTAGGGGTTGCTTGTTAGCACCATTGGTTAGATGCTTTGGGAAGAAACCCCAGTGCCCCTCATTTTTTGTGTTTTGTGGTGCCTGGTTTCGTGTTCTTGTGTTTTCTTCCATGGATAAGTTAAAGCTCAAATGCAAGGGGATTTTCTGTAACATAGGTTGTCTTGGATGCTGCAAAAAAACTCCAGTAATTATTTCAATGGATGAAGCATCTAAAGGACTAAGAACTCAAGGTCAAACAGTGAGTAAAGTGGATGGATCAGAAGATTTCTGGAGCAGCAGCACCTTTGAGTTAGACCATAGTGCTGCTCATTCACAGAGAAGCATCTCGTCAATCGGAATGCCAAATAATCCTTCTGATTCTCAGTGTAGTGGAGGCAGTCAAAGTGGTGCTCCTGAATTTGTCAACCATGGGCTTCTTCTTTGGAACCAGATAAGGCAACAATGGGTTGGAAACAAAAGGTCTGAGAGTATCGCAGAAATTCAAGAACCAAGAATAAGTTCCAATGCCAACTACGACAACCTACTTGGGAACAACAAACCCTATCCCCAACGCATTCCTCTGAGAGAAATGATTGACTTTCTTGTTGATATTTGGGAGCAAGAGGGTCTGTATGACTGA

>Glyma17g31920.4   sequence type=CDS   gene model=Glyma17g31920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTGAAAATGAGTGCAATATGAAAGATCCAAAGTCACTAGTAGTTGTCTTGATTAAGAACATAGGTTGTCTTGGATGCTGCAAAAAAACTCCAGTAATTATTTCAATGGATGAAGCATCTAAAGGACTAAGAACTCAAGGTCAAACAGTGAGTAAAGTGGATGGATCAGAAGATTTCTGGAGCAGCAGCACCTTTGAGTTAGACCATAGTGCTGCTCATTCACAGAGAAGCATCTCGTCAATCGGAATGCCAAATAATCCTTCTGATTCTCAGTGTAGTGGAGGCAGTCAAAGTGGTGCTCCTGAATTTGTCAACCATGGGCTTCTTCTTTGGAACCAGATAAGGCAACAATGGGTTGGAAACAAAAGGTCTGAGAGTATCGCAGAAATTCAAGAACCAAGAATAAGTTCCAATGCCAACTACGACAACCTACTTGGGAACAACAAACCCTATCCCCAACGCATTCCTCTGAGAGAAATGATTGACTTTCTTGTTGATATTTGGGAGCAAGAGGGTCTGTATGACTGA

>Glyma17g31920.5   sequence type=CDS   gene model=Glyma17g31920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGAAGCATCTAAAGGACTAAGAACTCAAGGTCAAACAGTGAGTAAAGTGGATGGATCAGAAGATTTCTGGAGCAGCAGCACCTTTGAGTTAGACCATAGTGCTGCTCATTCACAGAGAAGCATCTCGTCAATCGGAATGCCAAATAATCCTTCTGATTCTCAGTGTAGTGGAGGCAGTCAAAGTGGTGCTCCTGAATTTGTCAACCATGGGCTTCTTCTTTGGAACCAGATAAGGCAACAATGGGTTGGAAACAAAAGGTCTGAGAGTATCGCAGAAATTCAAGAACCAAGAATAAGTTCCAATGCCAACTACGACAACCTACTTGGGAACAACAAACCCTATCCCCAACGCATTCCTCTGAGAGAAATGATTGACTTTCTTGTTGATATTTGGGAGCAAGAGGGTCTGTATGACTGA

>Glyma17g31920.6   sequence type=CDS   gene model=Glyma17g31920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGAAGCATCTAAAGGACTAAGAACTCAAGGTCAAACAGTGAGTAAAGTGGATGGATCAGAAGATTTCTGGAGCAGCAGCACCTTTGAGTTAGACCATAGTGCTGCTCATTCACAGAGAAGCATCTCGTCAATCGGAATGCCAAATAATCCTTCTGATTCTCAGTGTAGTGGAGGCAGTCAAAGTGGTGCTCCTGAATTTGTCAACCATGGGCTTCTTCTTTGGAACCAGATAAGGCAACAATGGGTTGGAAACAAAAGGTCTGAGAGTATCGCAGAAATTCAAGAACCAAGAATAAGTTCCAATGCCAACTACGACAACCTACTTGGGAACAACAAACCCTATCCCCAACGCATTCCTCTGAGAGAAATGATTGACTTTCTTGTTGATATTTGGGAGCAAGAGGGTCTGTATGACTGA

>Glyma17g31920.7   sequence type=CDS   gene model=Glyma17g31920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGAAGCATCTAAAGGACTAAGAACTCAAGGTCAAACAGTGAGTAAAGTGGATGGATCAGAAGATTTCTGGAGCAGCAGCACCTTTGAGTTAGACCATAGTGCTGCTCATTCACAGAGAAGCATCTCGTCAATCGGAATGCCAAATAATCCTTCTGATTCTCAGTGTAGTGGAGGCAGTCAAAGTGGTGCTCCTGAATTTGTCAACCATGGGCTTCTTCTTTGGAACCAGATAAGGCAACAATGGGTTGGAAACAAAAGGTCTGAGAGTATCGCAGAAATTCAAGAACCAAGAATAAGTTCCAATGCCAACTACGACAACCTACTTGGGAACAACAAACCCTATCCCCAACGCATTCCTCTGAGAGAAATGATTGACTTTCTTGTTGATATTTGGGAGCAAGAGGGTCTGTATGACTGA

Predicted protein sequences of Glyma17g31920

Limit To All Plant Sequences

>Glyma17g31920.3   sequence type=predicted peptide   gene model=Glyma17g31920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYSRGCLLAPLVRCFGKKPQCPSFFVFCGAWFRVLVFSSMDKLKLKCKGIFCNIGCLGCCKKTPVIISMDEASKGLRTQGQTVSKVDGSEDFWSSSTFELDHSAAHSQRSISSIGMPNNPSDSQCSGGSQSGAPEFVNHGLLLWNQIRQQWVGNKRSESIAEIQEPRISSNANYDNLLGNNKPYPQRIPLREMIDFLVDIWEQEGLYD*

>Glyma17g31920.4   sequence type=predicted peptide   gene model=Glyma17g31920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSENECNMKDPKSLVVVLIKNIGCLGCCKKTPVIISMDEASKGLRTQGQTVSKVDGSEDFWSSSTFELDHSAAHSQRSISSIGMPNNPSDSQCSGGSQSGAPEFVNHGLLLWNQIRQQWVGNKRSESIAEIQEPRISSNANYDNLLGNNKPYPQRIPLREMIDFLVDIWEQEGLYD*

>Glyma17g31920.5   sequence type=predicted peptide   gene model=Glyma17g31920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDEASKGLRTQGQTVSKVDGSEDFWSSSTFELDHSAAHSQRSISSIGMPNNPSDSQCSGGSQSGAPEFVNHGLLLWNQIRQQWVGNKRSESIAEIQEPRISSNANYDNLLGNNKPYPQRIPLREMIDFLVDIWEQEGLYD*

>Glyma17g31920.6   sequence type=predicted peptide   gene model=Glyma17g31920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDEASKGLRTQGQTVSKVDGSEDFWSSSTFELDHSAAHSQRSISSIGMPNNPSDSQCSGGSQSGAPEFVNHGLLLWNQIRQQWVGNKRSESIAEIQEPRISSNANYDNLLGNNKPYPQRIPLREMIDFLVDIWEQEGLYD*

>Glyma17g31920.7   sequence type=predicted peptide   gene model=Glyma17g31920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDEASKGLRTQGQTVSKVDGSEDFWSSSTFELDHSAAHSQRSISSIGMPNNPSDSQCSGGSQSGAPEFVNHGLLLWNQIRQQWVGNKRSESIAEIQEPRISSNANYDNLLGNNKPYPQRIPLREMIDFLVDIWEQEGLYD*

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