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Report for Sequence Feature Glyma17g31900

Feature Type:gene_model
Chromosome:Gm17
Start:35078089
stop:35079829
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g31900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G25390AT Annotation by Michelle Graham. TAIR10: Integrase-type DNA-binding superfamily protein | chr5:8820637-8821741 FORWARD LENGTH=189 SoyBaseE_val: 2.00E-68ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
PF00847PFAM AP2 domain JGI ISS
UniRef100_G7I702UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ethylene-responsive transcription factor SHINE n=1 Tax=Medicago truncatula RepID=G7I702_MEDTR SoyBaseE_val: 2.00E-73ISS
UniRef100_I1MWS0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MWS0_SOYBN SoyBaseE_val: 2.00E-146ISS

Expression Patterns of Glyma17g31900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g31900 not represented in the dataset
Glyma17g31900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g31900 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g210500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g31900
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma17g31900
>Glyma17g31900.1   sequence type=CDS   gene model=Glyma17g31900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTACAAGCAAAGAAGTTCAGGGGAGTAAGACAGCGCCAATGGGGCTCATGGGTCTCAGAAATTCGTCACCCCTTGCTGAAGAGAAGGGTGTGGCTAGGTACATTTGAGACAGCAGAGGCTGCAGCAAGGGCATATGACCAAGCAGCAATTTTGATGAGTGGTCAAAATGCCAAGACCAATTTCCCTACACAAATGAATCAGCCTCAAGGTGCTACTACTACTACTCCGTGTGTAGACCCTTTCTCATCTCCAAATGTTCTTTCTGAGCATCTGAGTAGGAAGCTCAAGAGATGCTGCAAAGACCCTTCTCCATCCCTCACATGTCTAAGGCTAGATGCTGACAATTCCCACATTGGAGTGTGGCAAAAGGGTGCAGGACCACATTCAGACTCTAACTGGATTGTAAGGGTTGAGATTGGAAAGAAATTACATGCAGAGGGTGAGTCATCAAGTGTATCATCATCAGCAGCAGGAGGGTCACCACCAAAACCTAGTGTTGGTCATGGTGATGGTTATGGTGACGAAGAGGATAGAATTGCCATGCAGATGATTGATGAGCTTCTTAATTGGAATCATCCCTGTGGTTCGAGTAATTAA
Predicted protein sequences of Glyma17g31900
>Glyma17g31900.1   sequence type=predicted peptide   gene model=Glyma17g31900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVQAKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAILMSGQNAKTNFPTQMNQPQGATTTTPCVDPFSSPNVLSEHLSRKLKRCCKDPSPSLTCLRLDADNSHIGVWQKGAGPHSDSNWIVRVEIGKKLHAEGESSSVSSSAAGGSPPKPSVGHGDGYGDEEDRIAMQMIDELLNWNHPCGSSN*






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