Glyma17g31070 - SoyBase

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Report for Sequence Feature Glyma17g31070

Feature Type:	gene_model
Chromosome:	Gm17
Start:	34204483
stop:	34207330
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g31070

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G11330	AT	Annotation by Michelle Graham. TAIR10: FAD/NAD(P)-binding oxidoreductase family protein \| chr5:3617342-3618861 REVERSE LENGTH=408	SoyBase	E_val: 0	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
KOG2614	KOG	Kynurenine 3-monooxygenase and related flavoprotein monooxygenases	JGI		ISS
PTHR13789	Panther	MONOOXYGENASE	JGI		ISS
PTHR13789:SF8	Panther	gb def: putative monooxygenase [streptomyces coelicolor a3(2)]	JGI		ISS
PF01266	PFAM	FAD dependent oxidoreductase	JGI		ISS
PF01494	PFAM	FAD binding domain	JGI		ISS
UniRef100_G7I6C9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 3-hydroxybenzoate 6-hydroxylase n=1 Tax=Medicago truncatula RepID=G7I6C9_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MWN9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MWN9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g31070

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g31070

Paralog	Evidence	Comments
Glyma14g15291	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g31070 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g206700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g31070

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g31070

Limit To All Plant Sequences

>Glyma17g31070.1   sequence type=CDS   gene model=Glyma17g31070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAGATGTGTGTGATAATTTGATGATGCTTGAAGAGAGAGTAGAGAAAGAAAAGAAAAACATGGTTGGTGAAGGAGAAAAGCCGAAGGCAGTGATAATAGGAGGTAGCATAGCAGGGATATCAAGTGCACATGCTCTCACCTTAGCTGGTTGGGATGTACTTGTGCTTGAGAAAACCACCTCACCTCCAACTGGAAGCCCCACTGGTGCAGGTCTTGGACTCAATTCTTTGTCCCAACAAATCATCCACTCTTGGCTTCCACCACACCAAAAACAACTCCTTCACAACACCACTTTAACACTCACCATTGATCAGAACCATGCAACTGATAGTGAGAAGAAGTTTAGCTGGACATTGACAAGAGATGAGAGTTTTAACTTCAGAGCAGCACATTGGGCTGATCTCCATGGCCTTCTGTACAATGCACTGCCACCAAATGTATTTTTGTGGGGTCACCTTTTTCTCTCAGTCCATGTTGCTGATGATAAGGGTTCAGTCATAGTAAAGGCTAAAGTACTAGAAACTGGCAAGATTATAGAGATAGTAGGGGATTTTCTTGTTGCGGCAGATGGTTGTCTCTCTTCCCTCCGCCAGAAATATCTCCCCGATTTTAAACTCAGATATTCTGGCTATTGTGCTTGGAGAGGGGTTCTTGATTTTTCAAAAATTGAGAATTCAGAAACCATCAATGGTATCAGAAAGGCATACCCTGATCTAGGAAAATGCTTGTACTTTGACTTGGCCTCTGGCACACACACTGTGTTGTATGAGCTGCAAAACAAGAAGCTCAATTGGATTTGGTATGTGAATCAGCCTGAGCCTGAAGTTAAGGGAACATCGGTGACAATGAAAGTAAACAATGACATGATCCAGAAAATGCACCAAGAAGCGGAACAAGTTTGGATTCCTGAGTTGGTAAAGGTCATAAAGGAAACAAAGGACCCTTTCTTAAATTTCATATATGATAGTGATCCCTTAGAGAAGATCTTTTGGGACAATGTGGTATTGGTAGGGGATGCAGCTCACCCCACAACTCCTCACTGCCTTAGAAGCACTAACATGTCAATATTGGATGCAGCAGTGTTAGGCAAATGCATAGAGAAGTGGGGACCAGAAAAGCTTGGATCAGCTTTAGAAGAGTATCAGTTCGTTAGGCTACCAGTCACTTCCAAGGAAGTTCTGTACTCAAGGCGTCTTGGCCGATTGAAACAAGGGCTAGTTCTACCTGATAGAGAACCTTTTGACCCAAAGTTAATTAGGCCAGAGGACTGCCAGGAGCTTCTACTGAGGAACACACCATTTTTTAATGATGAGCCGTTGTCACTGCTTTGA

Predicted protein sequences of Glyma17g31070

Limit To All Plant Sequences

>Glyma17g31070.1   sequence type=predicted peptide   gene model=Glyma17g31070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSDVCDNLMMLEERVEKEKKNMVGEGEKPKAVIIGGSIAGISSAHALTLAGWDVLVLEKTTSPPTGSPTGAGLGLNSLSQQIIHSWLPPHQKQLLHNTTLTLTIDQNHATDSEKKFSWTLTRDESFNFRAAHWADLHGLLYNALPPNVFLWGHLFLSVHVADDKGSVIVKAKVLETGKIIEIVGDFLVAADGCLSSLRQKYLPDFKLRYSGYCAWRGVLDFSKIENSETINGIRKAYPDLGKCLYFDLASGTHTVLYELQNKKLNWIWYVNQPEPEVKGTSVTMKVNNDMIQKMHQEAEQVWIPELVKVIKETKDPFLNFIYDSDPLEKIFWDNVVLVGDAAHPTTPHCLRSTNMSILDAAVLGKCIEKWGPEKLGSALEEYQFVRLPVTSKEVLYSRRLGRLKQGLVLPDREPFDPKLIRPEDCQELLLRNTPFFNDEPLSLL*

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